Clone Sequence Records
BO13518.5prime Sequence
632 bp (631 high quality bases) assembled on 2006-05-08
> BO13518.5prime
GAAGTTATCAGTCGACATGGGAAAACACAAGAAAACGCAGAAGGTTAAGA
AACAACGTAATGCACAGCTTAAACGCATCATAAAACCCACAGACGCGCGG
CTTAAGGATCAGATTCGAGTGAAAAGAAAGAAGGCCGAGGATCCGCACCA
GATCAAGGTGCACGAGGCCACCCAGCAGAGCTCCGCTCTGTTCTTCCAGT
ACAACACCCAGCTGGGACCGCCGTACCACATCGTTCTGGACACGAACTTC
ATTAACTTTAGCATTAAGAACAAACTGGATATTGTGCAAGGTATGATGGA
CTGTCTGTATGCCAAGTGCATACCCTATATCTCCGACTGCGTGCGTGCCG
AGCTGGAGAAGCTGGGCAACAAGTACAAGCTGGCCCTGCGCATCATCTCC
GATCCCAGATTCGAGCGACTGCCGTGCCTGCACAAGGGCACCTATGCGGA
CGATTGCCTCGTGGAGCGGGTGCGCCAGCACAAATGCTACATTGTGGCCA
CCAACGACAAGGACCTTAAGAATCGCATCCGGAAGATTCCCGGCGTGCCC
ATCATGTACGTGGCTGCGCATAAGTACGCGATTGAGCGTATGCCAGAAGC
GTATGGAGTCAAGGCGGCAAGCTTTCTAGACC
BO13518.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4539-PA | 603 | Bka-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bka-RA | 758 | CG4539-RA | 92..691 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9895440..9896037 | 19..616 | 2990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:53:00 has no hits.
BO13518.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:32 Download gff for
BO13518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:01 Download gff for
BO13518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4539-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:00 Download gff for
BO13518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 83..700 | 9..625 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:58 Download gff for
BO13518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 83..700 | 9..625 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:58 Download gff for
BO13518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9895431..9896046 | 8..625 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:00 Download gff for
BO13518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9895431..9896046 | 8..625 | 98 | | Plus |
BO13518.3prime Sequence
632 bp (631 high quality bases) assembled on 2006-05-08
> BO13518.3prime
ATGGTCTAGAAAGCTTGCCGCCTTGACTCCATACGCTTCTGGCATACGCT
CAATCGCGTACTTATGCGCAGCCACGTACATGATGGGCACGCCGGGAATC
TTCCGGATGCGATTCTTAAGGTCCTTGTCGTTGGTGGCCACAATGTAGCA
TTTGTGCTGGCGCACCCGCTCCACGAGGCAATCGTCCGCATAGGTGCCCT
TGTGCAGGCACGGCAGTCGCTCGAATCTGGGATCGGAGATGATGCGCAGG
GCCAGCTTGTACTTGTTGCCCAGCTTCTCCAGCTCGGCACGCACGCAGTC
GGAGATATAGGGTATGCACTTGGCATACAGACAGTCCATCATACCTTGCA
CAATATCCAGTTTGTTCTTAATGCTAAAGTTAATGAAGTTCGTGTCCAGA
ACGATGTGGTACGGCGGTCCCAGCTGGGTGTTGTACTGGAAGAACAGAGC
GGAGCTCTGCTGGGTGGCCTCGTGCACCTTGATCTGGTGCGGATCCTCGG
CCTTCTTTCTTTTCACTCGAATCTGATCCTTAAGCCGCGCGTCTGTGGGT
TTTATGATGCGTTTAAGCTGTGCATTACGTTGTTTCTTAACCTTCTGCGT
TTTCTTGTGTTTTCCCATGTCGACTGATAACT
BO13518.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4539-PA | 603 | Bka-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bka-RA | 758 | CG4539-RA | 92..691 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9895440..9896037 | 616..19 | 2990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:46 has no hits.
BO13518.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:31 Download gff for
BO13518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:00 Download gff for
BO13518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4539-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:30 Download gff for
BO13518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 83..700 | 10..626 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:52 Download gff for
BO13518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 83..700 | 10..626 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:52 Download gff for
BO13518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9895431..9896046 | 10..627 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:30 Download gff for
BO13518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9895431..9896046 | 10..627 | 98 | | Minus |
BO13518.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ632805
> BO13518.complete
GAAGTTATCAGTCGACATGGGAAAACACAAGAAAACGCAGAAGGTTAAGA
AACAACGTAATGCACAGCTTAAACGCATCATAAAACCCACAGACGCGCGG
CTTAAGGATCAGATTCGAGTGAAAAGAAAGAAGGCCGAGGATCCGCACCA
GATCAAGGTGCACGAGGCCACCCAGCAGAGCTCCGCTCTGTTCTTCCAGT
ACAACACCCAGCTGGGACCGCCGTACCACATCGTTCTGGACACGAACTTC
ATTAACTTTAGCATTAAGAACAAACTGGATATTGTGCAAGGTATGATGGA
CTGTCTGTATGCCAAGTGCATACCCTATATCTCCGACTGCGTGCGTGCCG
AGCTGGAGAAGCTGGGCAACAAGTACAAGCTGGCCCTGCGCATCATCTCC
GATCCCAGATTCGAGCGACTGCCGTGCCTGCACAAGGGCACCTATGCGGA
CGATTGCCTCGTGGAGCGGGTGCGCCAGCACAAATGCTACATTGTGGCCA
CCAACGACAAGGACCTTAAGAATCGCATCCGGAAGATTCCCGGCGTGCCC
ATCATGTACGTGGCTGCGCATAAGTACGCGATTGAGCGTATGCCAGAAGC
GTATGGAGTCAAGGCGGCAAGCTTTCTAGACCAT
BO13518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bka-RA | 603 | CG4539-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bka-RA | 758 | CG4539-RA | 92..691 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9895440..9896037 | 19..616 | 2990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:53:01 has no hits.
BO13518.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:55 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:14 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 81..698 | 9..625 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:14 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 92..691 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:55 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 81..698 | 9..625 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:04 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bka-RA | 92..691 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:04 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9895439..9896037 | 17..618 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:14 Download gff for
BO13518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9895439..9896037 | 17..618 | 99 | | Plus |
BO13518.pep Sequence
Translation from 16 to 634
> BO13518.pep
MGKHKKTQKVKKQRNAQLKRIIKPTDARLKDQIRVKRKKAEDPHQIKVHE
ATQQSSALFFQYNTQLGPPYHIVLDTNFINFSIKNKLDIVQGMMDCLYAK
CIPYISDCVRAELEKLGNKYKLALRIISDPRFERLPCLHKGTYADDCLVE
RVRQHKCYIVATNDKDLKNRIRKIPGVPIMYVAAHKYAIERMPEAYGVKA
ASFLDH
BO13518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bka-PA | 200 | CG4539-PA | 1..200 | 1..200 | 1053 | 100 | Plus |
