Clone Sequence Records
BO13520.3prime Sequence
834 bp (807 high quality bases) assembled on 2006-05-08
> BO13520.3prime
ATGGTCTAGAAAGCTTGCGACACTGATCGTGCGAAAGATATTAAAGCCAC
TGTGGGCTGTAGAAAGTAGAACGCCCGGCAGTTGAGGGTGCCAGTGTAGC
TCTTTAATCTCCTTTTGTCCCTGGTGAATAAAAAGCAATTGCGGTGGCAA
CTTGTTTAGGACATCTTCGTTTTGCGCCGGGTCCACCGCCTGATCGATGT
CCTTCTCTACAGCCAAATCCCACAAAGCAATTTGGTCATCGTCACCGCCT
GACGCCAGTACGGTAGCCTCTGCGGGACTCCATTCGACAGTAGTGATGTG
GTCCGTGTGGTGCTTAAAAGTGGCAATCGGCTTTTTGCTCTGAAACTGAC
GTAGGTCCCAGATGTGGAGGTAGCCGTCGTCGCCGCCACTGGCGATAAAA
GGCTCGTTGCGATTCCACGAAATCACGTTTACGTCGCTCTGGTGTGCGTC
CTCGCATGTCAGCATACATGCTTTCTGAGGCGAGGCGCGGCAGTCCCAAA
TTCGGATGGTTTTGTCCACCGAACAGGACGCGAGAACGCTACGTTCGTTT
GGACTCCATTGCAGATCTTCAACTGACTGTGAGTGGCCCGCTAGGGGACG
TTGATCAACTTTCCATGTGCCGTCTTCTACCGGAGTCCACACGTGTATGT
CTCGCCGGCAGTCCCCTGTCGCCAGTACACCATCTGCACTGGGACTCCAG
TCGATGGCGAAGCCCTCCTGCTGATGGCCACCAAAAGTAAACACTGGACG
CGCTTCGCTTTGCTCGTACTGCTTGGCCAACTGAGCGTTCTCCACGGCCT
GCAATGGCTGAGTTAGGTCCCAAATGTTCACACG
BO13520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12792-PA | 1371 | l(2)09851-RA | 553..1368 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 652..1467 | 834..19 | 4080 | 100 | Minus |
| l(2)09851-RA | 1536 | CG12792-RA | 652..1467 | 834..19 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5755168..5755983 | 834..19 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:37:28 has no hits.
BO13520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:35 Download gff for
BO13520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12792-PA | 553..1371 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:06 Download gff for
BO13520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12792-PA | 553..1371 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:37 Download gff for
BO13520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 652..1473 | 12..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:49 Download gff for
BO13520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 652..1473 | 12..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:49 Download gff for
BO13520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5755168..5755989 | 12..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:37 Download gff for
BO13520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642673..1643494 | 12..834 | 99 | | Minus |
BO13520.5prime Sequence
883 bp (790 high quality bases) assembled on 2006-05-08
> BO13520.5prime
GAAGTTATCAGTCGACATGGATGATGGAAATGAAAACATTAGTATGGAAG
TGGTGGAGCCCGAAGACGCCGAGAGCGACATGAGCTCTGACAGTGGTAGT
GACGCAGAAGACGATACCGCTGAGCCCAAAGCCCCCAAAGAGGTCTACTT
GCCCGGAACCAAACTCGCAGACGATGAGGAGCTGGTCTGCGATGAGAGTG
CGTACGTGATGCTGCACCAAGCTTCTACGGGAGCTCCCTGCCTGAGCTTT
GATGTCATTCCCGACGAGTTGGGCAGCGGACGGCAGTCGTTCCCGATGAC
GGCTTATATTGTGGCCGGCACGCAAGCTTCCCGCGCCCATGTCAACAACC
TTATTGTGATGAAAATGAGCAACCTGCACAAGACGCAGGACAATGACGGC
GACGAAGACGAGGAGCTAGAAGACGACCAAGACGACGTGACTGACAGGGA
GGAGCTCAAAAAGCCGCAGATGACATGCGCCCTTGTCAAGCACCAAGGGT
GCGTTAATCGCGTCCGTGCCCGCCGATTGGGCAATTCGGTCTACGCTGCC
TCCTGGAGCGAACTTGGTCGTGTGAACATTTGGGACCTAACTCAGCCATT
GCAGGCCGTGGAGAACGCTCAGTTGGCCAAGCAGTACGAGCAAAGCGAAG
CGCGTCCAGTGTTTACTTTTGGTGGCCATCAGCAGGAGGGCTTCGCCATC
GACTGGAGTCCCAGTGCAGATGGTGTACTGGCGACAGGGGACTGCCGGCG
AGACATACACGTGTGGACTCCGGTAGAAGACGGCACATGGAAAGTTGATC
AACGTCCCCTAGCGGGCCACTCACAGTCAGTTGAAGATCTGCAATGGAGT
CCAAACGAACGTAGCGTTCTCGCGTCCTGGTCG
BO13520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12792-PA | 1371 | l(2)09851-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 100..966 | 17..883 | 4320 | 99.9 | Plus |
| l(2)09851-RA | 1536 | CG12792-RA | 100..966 | 17..883 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5754616..5755482 | 17..883 | 4320 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:42:29 has no hits.
BO13520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:36 Download gff for
BO13520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12792-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:08 Download gff for
BO13520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12792-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:13 Download gff for
BO13520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 96..966 | 10..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:45 Download gff for
BO13520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 96..966 | 10..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:45 Download gff for
BO13520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5754612..5755482 | 10..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:13 Download gff for
BO13520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642117..1642987 | 10..883 | 99 | | Plus |
BO13520.complete Sequence
1402 bp assembled on 2006-10-11
GenBank Submission: FJ632806
> BO13520.complete
GAAGTTATCAGTCGACATGGATGATGGAAATGAAAACATTAGTATGGAAG
TGGTGGAGCCCGAAGACGCCGAGAGCGACATGAGCTCTGACAGTGGTAGT
GACGCAGAAGACGATACCGCTGAGCCCAAAGCCCCCAAAGAGGTCTACTT
GCCCGGAACCAAACTCGCAGACGATGAGGAGCTGGTCTGCGATGAGAGTG
CGTACGTGATGCTGCACCAAGCTTCTACGGGAGCTCCCTGCCTGAGCTTT
GATGTCATTCCCGACGAGTTGGGCAGCGGACGGCAGTCGTTCCCGATGAC
GGCTTATATTGTGGCCGGCACGCAAGCTTCCCGCGCCCATGTCAACAACC
TTATTGTGATGAAAATGAGCAACCTGCACAAGACGCAGGACAATGACGGC
GACGAAGACGAGGAGCTAGAAGACGACCAAGACGACGTGACTGACAGGGA
GGAGCTCAAAAAGCCGCAGATGACATGCGCCCTTGTCAAGCACCAAGGGT
GCGTTAATCGCGTCCGTGCCCGCCGATTGGGCAATTCGGTCTACGCTGCC
TCCTGGAGCGAACTTGGTCGTGTGAACATTTGGGACCTAACTCAGCCATT
GCAGGCCGTGGAGAACGCTCAGTTGGCCAAGCAGTACGAGCAAAGCGAAG
CGCGTCCAGTGTTTACTTTTGGTGGCCATCAGCAGGAGGGCTTCGCCATC
GACTGGAGTCCCAGTGCAGATGGTGTACTGGCGACAGGGGACTGCCGGCG
AGACATACACGTGTGGACTCCGGTAGAAGACGGCACATGGAAAGTTGATC
AACGTCCCCTAGCGGGCCACTCACAGTCAGTTGAAGATCTGCAATGGAGT
CCAAACGAACGTAGCGTTCTCGCGTCCTGTTCGGTGGACAAAACCATCCG
AATTTGGGACTGCCGCGCCTCGCCTCAGAAAGCATGTATGCTGACATGCG
AGGACGCACACCAGAGCGACGTAAACGTGATTTCGTGGAATCGCAACGAG
CCTTTTATCGCCAGTGGCGGCGACGACGGCTACCTCCACATCTGGGACCT
ACGTCAGTTTCAGAGCAAAAAGCCGATTGCCACTTTTAAGCACCACACGG
ACCACATCACTACTGTCGAATGGAGTCCCGCAGAGGCTACCGTACTGGCG
TCAGGCGGTGACGATGACCAAATTGCTTTGTGGGATTTGGCTGTAGAGAA
GGACATCGATCAGGCGGTGGACCCGGCGCAAAACGAAGATGTCCTAAACA
AGTTGCCACCGCAATTGCTTTTTATTCACCAGGGACAAAAGGAGATTAAA
GAGCTACACTGGCACCCTCAACTGCCGGGCGTTCTACTTTCTACAGCCCA
CAGTGGCTTTAATATCTTTCGCACGATCAGTGTCGCAAGCTTTCTAGACC
AT
BO13520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1371 | CG12792-PB | 1..1368 | 17..1384 | 6840 | 100 | Plus |
| l(2)09851-RA | 1371 | CG12792-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 100..1467 | 17..1384 | 6840 | 100 | Plus |
| l(2)09851-RA | 1536 | CG12792-RA | 100..1467 | 17..1384 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5754616..5755983 | 17..1384 | 6840 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:26 has no hits.
BO13520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:09 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 1..1371 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:28 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 85..1462 | 10..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:47 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 100..1467 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:09 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 85..1462 | 10..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:42 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 100..1467 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:42 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5754616..5755983 | 17..1386 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:47 Download gff for
BO13520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642121..1643488 | 17..1386 | 99 | | Plus |
BO13520.pep Sequence
Translation from 16 to 1402
> BO13520.pep
MDDGNENISMEVVEPEDAESDMSSDSGSDAEDDTAEPKAPKEVYLPGTKL
ADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPMTAYIVA
GTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQDDVTDREELKKP
QMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVEN
AQLAKQYEQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW
TPVEDGTWKVDQRPLAGHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCR
ASPQKACMLTCEDAHQSDVNVISWNRNEPFIASGGDDGYLHIWDLRQFQS
KKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQA
VDPAQNEDVLNKLPPQLLFIHQGQKEIKELHWHPQLPGVLLSTAHSGFNI
FRTISVASFLDH
BO13520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-PB | 456 | CG12792-PB | 1..456 | 1..456 | 2434 | 100 | Plus |
| l(2)09851-PA | 456 | CG12792-PA | 1..456 | 1..456 | 2434 | 100 | Plus |
| Caf1-PA | 430 | CG4236-PA | 5..398 | 24..444 | 337 | 27.6 | Plus |
| Caf1-PB | 429 | CG4236-PB | 124..397 | 157..444 | 336 | 31.2 | Plus |
| CG1109-PB | 807 | CG1109-PB | 213..394 | 206..397 | 199 | 26.8 | Plus |
