Clone BO13521 Report

Search the DGRC for BO13521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG7239-RA
Protein status:BO13521.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO13521.3prime Sequence

923 bp (838 high quality bases) assembled on 2006-05-08

> BO13521.3prime
ATGGTCTAGAAAGCTTGCCTGCGGCCGCTGGGCCGTAGGATGCTGATGCT
GCTTCTGCAGCTGAAGGACGTGGCTCAGAATCTGCGCCTGCTGCTCAAGA
CACTTGGGGAAGAAGGTCTGCATGAGGTCGACCTTGCGTTCCTCCAGCTC
CAGTCGCTGCCGACATATCTTGGTTTGTTCGTAGAGCAGCTGGTTCTTTC
GCCGAACTTCCTCCATGTAGAGCGCCTCCAGCGAGTCTGCGTGTGGGGGA
TTCACAGATCCGAATGGACGACCGCGCTTCCGTGGCACAGGGACGGGGGA
GGCGCCAACGACGGCGTTGTTGGTGGTCGAAACTGGAGCTGCAGCCGGAA
CCGATGCCGATACCTGTGCGGGCACCGGCGCTGGCATGCCTCCGTTTGCG
TTTGTGGCCACGCTGATGGTGTTATTGCTGCTATTGATATAGGCTACCGC
CGTTATGGGCTGATGGTTGACGGTCGATGTGGCCGCAGTGCTAATAACGC
TGTTGTTATTGAATTGAGCCGGCTGCTGCTGAAATTGCGACTCATAGTTT
GTTTGGAACTGCTGCTGTTGTTGCTGCTGCTGCTGCAGTTGTTGCTGCTG
CTGTGGCGTCTGCAGCTCGAGCAGCTGAGCCGGCTCGGCTGGGGAATACT
GTTGCAACTGCTCCTGAAAGGGAATGGAGCGGTACTCATCGTCCTCGTAC
TCCTGCTTGACCACCTCGTCATACTGGTCCGTAAACAGCTCCGTGTTGAA
GCTAACTCCGCCGCTGGTGTTGTTGTTGTGGCTGCTGCCGTGATTGCTAT
TGCTGCTGCTATTGTAATAGGTGGCAGTGCTTGGCTCACTGGCCAGTCCC
AAGCTTGCTGCTGCTGCTGCTGAACGGATTGCTGCTGTGGCTGCTGCTGC
AACTGCTCTGCGGACGCATCATC

BO13521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 1380 CG7239-RA 542..1377 854..19 4180 100 Minus
CG7239-PA 1380 CG7239-RA 472..541 923..854 350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1752 CG7239-RA 657..1562 923..19 4505 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802935..5803840 923..19 4480 99.9 Minus
Blast to na_te.dros performed 2015-02-11 16:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2656 907..560 326 58.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..7220 909..425 255 54.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6956 826..582 252 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7196 899..412 252 55.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6692..7089 893..486 243 55.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2847 909..412 236 56.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2874 814..313 182 52.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2832 832..760 176 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2687 809..413 174 54.6 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3345 896..760 166 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2837..2989 915..768 124 56.8 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 806..751 119 73.2 Minus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 806..751 119 73.2 Minus
invader2 5124 invader2 INVADER2 5124bp 656..725 805..737 113 64.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1602 814..765 112 72 Minus
roo 9092 roo DM_ROO 9092bp 1029..1105 96..19 108 61.5 Minus

BO13521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:37 Download gff for BO13521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-PA 472..1380 16..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:10 Download gff for BO13521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-PA 472..1380 16..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:39:35 Download gff for BO13521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 657..1571 8..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:04 Download gff for BO13521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 657..1571 8..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:04 Download gff for BO13521.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5802935..5803844 15..923 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:39:35 Download gff for BO13521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802935..5803844 15..923 99 <- Minus

BO13521.5prime Sequence

918 bp (856 high quality bases) assembled on 2006-05-08

> BO13521.5prime
GAAGTTATCAGTCGACATGGACTACGAGAAGCTGGCGTTGAACGCGGGCG
GAAGCGGCAGCGGTGCCGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAG
CTGCTCGATGGCAGGGGCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAG
CGAGGAGGAGCGCCTGTACGAGATCTGGGGACGCGACAACTGGCGCCTGA
CGCGCACCGGCAAGAACACCATCTTCTTTGGCCGGTGGGCCGAGGAACTG
CGCGACCGGTTCGCCGTGGACGTGAAGCCCGAGGAGATCCAGATGAAGGT
CAACCAGACCAGGGCCAAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGG
ATCCTTCGAGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGC
ATCCTGAAGAACCTGCACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGA
GGCGCTGCTCAACAACCGCGACATGACACCGCCCCGGGATGATGCGTCCG
CAGAGCAGTTGCAGCAGCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAG
CAGCAAGGCTTGGGACTGGCCAGTGAGCCAAGCACTGCCACCTATTACAA
TAGCAGCAGCAATAGCAATCACGGCAGCAGCCACAACAACAACACCAGCG
GCGGAGTTAGCTTCAACACGGAGCTGTTTACGGACCAGTATGACGAGGTG
GTCAAGCAGGAGTACGAGGACGATGAGTACCGCTCCATTCCCTTTCAGGA
GCAGTTGCAACAGTATTCCCCAGCCGAGCCGGCTCAGCTGCTCGAGCTGC
AGACGCCACAGCAGCAGCAACAACTGCAGCAGCAGCAGCAACAACAGCAG
CAGTTCCAAACAAACTATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATT
CAATAACAACAGCGTTAT

BO13521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 1380 CG7239-RA 1..902 17..918 4510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1752 CG7239-RA 186..1087 17..918 4510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802770..5803365 323..918 2980 100 Plus
2L 23513712 2L 5802405..5802713 17..325 1545 100 Plus
Blast to na_te.dros performed 2015-02-09 08:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2656 504..852 310 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2666 502..841 258 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6956 586..830 252 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6857 512..649 243 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..7118 502..884 242 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..7035 597..852 231 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6692..7076 518..913 225 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2522 460..669 218 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2679 598..911 179 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2832 580..652 176 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2552 603..855 171 56.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3345 515..652 159 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2745..2989 392..644 140 56.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 606..661 119 73.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 606..661 119 73.2 Plus
invader2 5124 invader2 INVADER2 5124bp 656..725 607..675 113 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1602 598..647 112 72 Plus

BO13521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:38 Download gff for BO13521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:11 Download gff for BO13521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:41 Download gff for BO13521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 176..1087 3..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:43 Download gff for BO13521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 176..1087 3..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:43 Download gff for BO13521.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5802395..5802712 3..324 98 -> Plus
2L 5802772..5803365 325..918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:41 Download gff for BO13521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802395..5802712 3..324 98 -> Plus
arm_2L 5802772..5803365 325..918 100   Plus

BO13521.complete Sequence

1411 bp assembled on 2007-10-17

GenBank Submission: FJ632807

> BO13521.complete
GAAGTTATCAGTCGACATGGACTACGAGAAGCTGGCGTTGAACGCGGGCG
GAAGCGGCAGCGGTGCCGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAG
CTGCTCGATGGCAGGGGCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAG
CGAGGAGGAGCGCCTGTACGAGATCTGGGGACGCGACAACTGGCGCCTGA
CGCGCACCGGCAAGAACACCATCTTCTTTGGCCGGTGGGCCGAGGAACTG
CGCGACCGGTTCGCCGTGGACGTGAAGCCCGAGGAGATCCAGATGAAGGT
CAACCAGACCAGGGCCAAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGG
ATCCTTCGAGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGC
ATCCTGAAGAACCTGCACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGA
GGCGCTGCTCAACAACCGCGACATGACACCGCCCCGGGATGATGCGTCCG
CAGAGCAGTTGCAGCAGCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAG
CAGCAAGGCTTGGGACTGGCCAGTGAGCCAAGCACTGCCACCTATTACAA
TAGCAGCAGCAATAGCAATCACGGCAGCAGCCACAACAACAACACCAGCG
GCGGAGTTAGCTTCAACACGGAGCTGTTTACGGACCAGTATGACGAGGTG
GTCAAGCAGGAGTACGAGGACGATGAGTACCGCTCCATTCCCTTTCAGGA
GCAGTTGCAACAGTATTCCCCAGCCGAGCCGGCTCAGCTGCTCGAGCTGC
AGACGCCACAGCAGCAGCAACAACTGCAGCAGCAGCAGCAACAACAGCAG
CAGTTCCAAACAAACTATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATT
CAATAACAACAGCGTTATTAGCACTGCGGCCACATCGACCGTCAACCATC
AGCCCATAACGGCGGTAGCCTATATCAATAGCAGCAATAACACCATCAGC
GTGGCCACAAACGCAAACGGAGGCATGCCAGCGCCGGTGCCCGCACAGGT
ATCGGCATCGGTTCCGGCTGCAGCTCCAGTTTCGACCACCAACAACGCCG
TCGTTGGCGCCTCCCCCGTCCCTGTGCCACGGAAGCGCGGTCGTCCATTC
GGATCTGTGAATCCCCCACACGCAGACTCGCTGGAGGCGCTCTACATGGA
GGAAGTTCGGCGAAAGAACCAGCTGCTCTACGAACAAACCAAGATATGTC
GGCAGCGACTGGAGCTGGAGGAACGCAAGGTCGACCTCATGCAGACCTTC
TTCCCCAAGTGTCTTGAGCAGCAGGCGCAGATTCTGAGCCACGTCCTTCA
GCTGCAGAAGCAGCATCAGCATCCTACGGCCCAGCGGCCGCAGGCAAGCT
TTCTAGACCAT

BO13521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1380 CG7239-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1752 CG7239-RA 186..1562 17..1393 6885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802770..5803840 323..1393 5355 100 Plus
2L 23513712 2L 5802405..5802713 17..325 1545 100 Plus
Blast to na_te.dros performed 2014-11-28 00:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2656 504..852 310 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2910 502..1099 263 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7196 512..1000 255 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6956 586..830 252 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..7220 502..987 249 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2847 460..1000 237 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6692..7089 518..926 236 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2874 598..1099 182 52.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2832 580..652 176 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2687 603..999 174 54.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3345 515..652 159 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2745..2989 392..644 140 56.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 606..661 119 73.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 606..661 119 73.2 Plus
invader2 5124 invader2 INVADER2 5124bp 656..725 607..675 113 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1602 598..647 112 72 Plus

BO13521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:58 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 1..1380 17..1396 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:59 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 141..1536 3..1404 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:36 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 186..1562 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:04 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 151..1527 17..1395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:05 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 186..1562 17..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:05 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5802405..5802712 17..324 100 -> Plus
2L 5802772..5803840 325..1395 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:36 Download gff for BO13521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802405..5802712 17..324 100 -> Plus
arm_2L 5802772..5803840 325..1395 99   Plus

BO13521.pep Sequence

Translation from 16 to 1411

> BO13521.pep
MDYEKLALNAGGSGSGAEQDLGMCGGQELLDGRGKEKARRYWTPSEEERL
YEIWGRDNWRLTRTGKNTIFFGRWAEELRDRFAVDVKPEEIQMKVNQTRA
KFRQVKKQLQADPSSYATRWKKYDIINRILKNLHRPKNADPLPPEALLNN
RDMTPPRDDASAEQLQQQPQQQSVQQQQQQGLGLASEPSTATYYNSSSNS
NHGSSHNNNTSGGVSFNTELFTDQYDEVVKQEYEDDEYRSIPFQEQLQQY
SPAEPAQLLELQTPQQQQQLQQQQQQQQQFQTNYESQFQQQPAQFNNNSV
ISTAATSTVNHQPITAVAYINSSNNTISVATNANGGMPAPVPAQVSASVP
AAAPVSTTNNAVVGASPVPVPRKRGRPFGSVNPPHADSLEALYMEEVRRK
NQLLYEQTKICRQRLELEERKVDLMQTFFPKCLEQQAQILSHVLQLQKQH
QHPTAQRPQASFLDH

BO13521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 459 CG7239-PA 1..459 1..459 2396 100 Plus
CG15740-PB 975 CG15740-PB 423..631 163..366 168 32.8 Plus
CG32532-PD 688 CG32532-PD 107..293 160..356 166 32 Plus
Smr-PG 3607 CG4013-PG 111..316 143..374 159 29.3 Plus