Clone BO13523 Report

Search the DGRC for BO13523

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptmab-21-RA
Protein status:BO13523.pep: validated full length
Sequenced Size:1129

Clone Sequence Records

BO13523.3prime Sequence

856 bp (754 high quality bases) assembled on 2006-05-08

> BO13523.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCTCCAGGCAACGGACATTGGTCAGCA
TGATCCGGGTGAGCCGCCAAACCTGCTTGGCGGCATTCTCCAGGGCACCC
GGCGACTTGCCCTTGAACAGATCCATATTGGGCAGGAAGTAGTGCGGACA
GCGGCGGCACTGCAGGCAGGATATCAGCTGCAGGAATATCCCATTGATCC
GGTCCGCGATGCAGTTCTCCTCCCATTCCATCTCGCGCGGATGCTTCTCG
CATTCGTAGAGCAGCAGGGTCTTCAGGTGGTACGACGTCACCGGATTGCC
GGGCAGGTCCAGGTGCCGATCACGCAGGGTCTTCAGAATGCTCAGGCAGC
GTCGTCGACTCGCTCCTTGCAGCAGCCGGTTTTCGGCGTCGGTGAAGCTG
AGCACCCAGGCGTCGCCCTCCATGGCGGAGTTCTTGCCCTGCAGTGCGAT
GCACTCCTTGGATAGCATGTCGAATCCCTCGGTCTTCACCTCGGCGACGA
TGTTGGGATGCGGCCATGGGATGCCCGGCAGCGGCCAGTGGGAGGCGGAT
CTCGGCCAAAGGCCGGCGCACTTAAAGGCGGGCGTAATCTGGACAATGAT
GCGCTCCCGGATGCGCAGCTTTACCTCCGTGGTGTCGGCGATCATCTTGA
CAATGTCGCGGTAGGCGCACTTGTCGCAGGCCTGGGCCACCAGGGTCTGG
AACCTGGAGCGGATCTTTCGGGCGGACAGATACCCACTGGCCGTGATGAA
CTCCACCCACAGGGACATGGATCTCTTCCTTCCATCGCTCAGCTTCAGGA
CGGCACATCCCGGCAAGGTGCCATCGTCCACAAAGTTGAGCACGCCCATC
TGAATC

BO13523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4746-PA 1098 mab-2-RA 261..1095 853..19 4175 100 Minus
CG4766-PA 1107 CG4766-RA 283..404 831..710 385 92.6 Minus
CG4766-PA 1107 CG4766-RA 909..989 214..134 230 91.3 Minus
CG4766-PA 1107 CG4766-RA 699..758 424..365 175 91.6 Minus
CG4766-PA 1107 CG4766-RA 844..887 279..236 170 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2082 CG4746-RA 620..1454 853..19 4175 100 Minus
CG4766-RA 2673 CG4766-RA 862..1659 853..65 1740 81.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6012074..6012562 365..853 2445 100 Plus
X 23542271 X 6008811..6009159 19..367 1745 100 Plus
X 23542271 X 5998946..5999443 365..853 1075 81.5 Plus
X 23542271 X 5998522..5998816 65..359 650 81.4 Plus
Blast to na_te.dros performed on 2015-02-10 18:33:34 has no hits.

BO13523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:39 Download gff for BO13523.3prime
Subject Subject Range Query Range Percent Splice Strand
mab-2-PA 258..1098 18..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:13 Download gff for BO13523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4746-PA 258..1098 18..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:45 Download gff for BO13523.3prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 617..1461 12..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:13 Download gff for BO13523.3prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 617..1461 12..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:13 Download gff for BO13523.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6008804..6009157 12..365 99 <- Plus
X 6012075..6012565 366..856 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:45 Download gff for BO13523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5902837..5903190 12..365 99 <- Plus
arm_X 5906108..5906598 366..856 99   Plus

BO13523.5prime Sequence

904 bp (829 high quality bases) assembled on 2006-05-08

> BO13523.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
CGGAGGTAAAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCC
GCCTTTAAGTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCT
GCCGGGCATCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCG
AGGGATTCGACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAAC
TCCGCCATGGAGGGCGACGCCTGNGTGCTCAGCTTCACCGACGCCGAAAA
CCGGCTGCTGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGA
CCCTGCGTGATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAC
CACCTGAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAAAT
GAAT

BO13523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4746-PA 1098 mab-2-RA 1..881 17..897 4386 99.8 Plus
CG4766-PA 1107 CG4766-RA 283..404 299..420 385 92.6 Plus
CG4766-PA 1107 CG4766-RA 844..887 851..894 170 95.4 Plus
CG4766-PA 1107 CG4766-RA 699..758 706..765 156 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2082 CG4746-RA 360..1244 17..901 4399 99.8 Plus
CG4766-RA 2673 CG4766-RA 728..1488 143..894 1544 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6012074..6012822 765..17 3734 99.9 Minus
X 23542271 X 5998946..5999499 765..221 1134 80.7 Minus
X 23542271 X 6009021..6009159 901..763 680 99.3 Minus
X 23542271 X 5998693..5998816 894..771 290 82.3 Minus
Blast to na_te.dros performed on 2015-02-10 20:38:45 has no hits.

BO13523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:40 Download gff for BO13523.5prime
Subject Subject Range Query Range Percent Splice Strand
mab-2-PA 1..889 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:14 Download gff for BO13523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4746-PA 1..889 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:30 Download gff for BO13523.5prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 358..1248 14..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:10 Download gff for BO13523.5prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 358..1248 14..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:10 Download gff for BO13523.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6009017..6009157 765..904 98 <- Minus
X 6012075..6012824 14..764 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:30 Download gff for BO13523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5903050..5903190 765..904 98 <- Minus
arm_X 5906108..5906857 14..764 99   Minus

BO13523.complete Sequence

1129 bp assembled on 2007-10-17

GenBank Submission: FJ632808

> BO13523.complete
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
CGGAGGTAAAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCC
GCCTTTAAGTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCT
GCCGGGCATCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCG
AGGGATTCGACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAAC
TCCGCCATGGAGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAA
CCGGCTGCTGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGA
CCCTGCGTGATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAC
CACCTGAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGAT
GGAATGGGAGGAGAACTGCATCGCGGACCGGATCAATGGGATATTCCTGC
AGCTGATATCCTGCCTGCAGTGCCGCCGCTGTCCGCACTACTTCCTGCCC
AATATGGATCTGTTCAAGGGCAAGTCGCCGGGTGCCCTGGAGAATGCCGC
CAAGCAGGTTTGGCGGCTCACCCGGATCATGCTGACCAATGTCCGTTGCC
TGGAGGAGCTGGCAAGCTTTCTAGACCAT

BO13523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 1098 CG4746-PA 1..1095 17..1111 5475 100 Plus
CG4766-RA 1107 CG4766-PA 127..1058 143..1065 1865 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2082 CG4746-RA 360..1454 17..1111 5475 100 Plus
CG4766-RA 2673 CG4766-RA 728..1659 143..1065 1865 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6012074..6012822 765..17 3745 100 Minus
X 23542271 X 6008811..6009159 1111..763 1745 100 Minus
X 23542271 X 5998946..5999499 765..221 1145 80.9 Minus
X 23542271 X 5998522..5998816 1065..771 650 81.4 Minus
Blast to na_te.dros performed on 2014-11-27 19:42:07 has no hits.

BO13523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:59 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 17..1112 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:01 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 355..1458 14..1118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:17 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 360..1454 17..1113 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:32 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 357..1451 17..1113 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:41 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 360..1454 17..1113 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:41 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
X 6008809..6009157 765..1113 99 <- Minus
X 6012075..6012822 17..764 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:17 Download gff for BO13523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5902842..5903190 765..1113 99 <- Minus
arm_X 5906108..5906855 17..764 100   Minus

BO13523.pep Sequence

Translation from 16 to 1129

> BO13523.pep
MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE
VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA
YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW
PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG
ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN
CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR
LTRIMLTNVRCLEELASFLDH

BO13523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-PA 365 CG4746-PA 1..365 1..365 1922 100 Plus
CG4766-PA 368 CG4766-PA 1..368 1..365 1567 77.7 Plus