Clone Sequence Records
BO13523.3prime Sequence
856 bp (754 high quality bases) assembled on 2006-05-08
> BO13523.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCTCCAGGCAACGGACATTGGTCAGCA
TGATCCGGGTGAGCCGCCAAACCTGCTTGGCGGCATTCTCCAGGGCACCC
GGCGACTTGCCCTTGAACAGATCCATATTGGGCAGGAAGTAGTGCGGACA
GCGGCGGCACTGCAGGCAGGATATCAGCTGCAGGAATATCCCATTGATCC
GGTCCGCGATGCAGTTCTCCTCCCATTCCATCTCGCGCGGATGCTTCTCG
CATTCGTAGAGCAGCAGGGTCTTCAGGTGGTACGACGTCACCGGATTGCC
GGGCAGGTCCAGGTGCCGATCACGCAGGGTCTTCAGAATGCTCAGGCAGC
GTCGTCGACTCGCTCCTTGCAGCAGCCGGTTTTCGGCGTCGGTGAAGCTG
AGCACCCAGGCGTCGCCCTCCATGGCGGAGTTCTTGCCCTGCAGTGCGAT
GCACTCCTTGGATAGCATGTCGAATCCCTCGGTCTTCACCTCGGCGACGA
TGTTGGGATGCGGCCATGGGATGCCCGGCAGCGGCCAGTGGGAGGCGGAT
CTCGGCCAAAGGCCGGCGCACTTAAAGGCGGGCGTAATCTGGACAATGAT
GCGCTCCCGGATGCGCAGCTTTACCTCCGTGGTGTCGGCGATCATCTTGA
CAATGTCGCGGTAGGCGCACTTGTCGCAGGCCTGGGCCACCAGGGTCTGG
AACCTGGAGCGGATCTTTCGGGCGGACAGATACCCACTGGCCGTGATGAA
CTCCACCCACAGGGACATGGATCTCTTCCTTCCATCGCTCAGCTTCAGGA
CGGCACATCCCGGCAAGGTGCCATCGTCCACAAAGTTGAGCACGCCCATC
TGAATC
BO13523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4746-PA | 1098 | mab-2-RA | 261..1095 | 853..19 | 4175 | 100 | Minus |
CG4766-PA | 1107 | CG4766-RA | 283..404 | 831..710 | 385 | 92.6 | Minus |
CG4766-PA | 1107 | CG4766-RA | 909..989 | 214..134 | 230 | 91.3 | Minus |
CG4766-PA | 1107 | CG4766-RA | 699..758 | 424..365 | 175 | 91.6 | Minus |
CG4766-PA | 1107 | CG4766-RA | 844..887 | 279..236 | 170 | 95.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 2082 | CG4746-RA | 620..1454 | 853..19 | 4175 | 100 | Minus |
CG4766-RA | 2673 | CG4766-RA | 862..1659 | 853..65 | 1740 | 81.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6012074..6012562 | 365..853 | 2445 | 100 | Plus |
X | 23542271 | X | 6008811..6009159 | 19..367 | 1745 | 100 | Plus |
X | 23542271 | X | 5998946..5999443 | 365..853 | 1075 | 81.5 | Plus |
X | 23542271 | X | 5998522..5998816 | 65..359 | 650 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:33:34 has no hits.
BO13523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:39 Download gff for
BO13523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-2-PA | 258..1098 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:13 Download gff for
BO13523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4746-PA | 258..1098 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:45 Download gff for
BO13523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 617..1461 | 12..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:13 Download gff for
BO13523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 617..1461 | 12..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:13 Download gff for
BO13523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6008804..6009157 | 12..365 | 99 | <- | Plus |
X | 6012075..6012565 | 366..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:45 Download gff for
BO13523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5902837..5903190 | 12..365 | 99 | <- | Plus |
arm_X | 5906108..5906598 | 366..856 | 99 | | Plus |
BO13523.5prime Sequence
904 bp (829 high quality bases) assembled on 2006-05-08
> BO13523.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
CGGAGGTAAAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCC
GCCTTTAAGTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCT
GCCGGGCATCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCG
AGGGATTCGACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAAC
TCCGCCATGGAGGGCGACGCCTGNGTGCTCAGCTTCACCGACGCCGAAAA
CCGGCTGCTGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGA
CCCTGCGTGATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAC
CACCTGAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAAAT
GAAT
BO13523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4746-PA | 1098 | mab-2-RA | 1..881 | 17..897 | 4386 | 99.8 | Plus |
CG4766-PA | 1107 | CG4766-RA | 283..404 | 299..420 | 385 | 92.6 | Plus |
CG4766-PA | 1107 | CG4766-RA | 844..887 | 851..894 | 170 | 95.4 | Plus |
CG4766-PA | 1107 | CG4766-RA | 699..758 | 706..765 | 156 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 2082 | CG4746-RA | 360..1244 | 17..901 | 4399 | 99.8 | Plus |
CG4766-RA | 2673 | CG4766-RA | 728..1488 | 143..894 | 1544 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6012074..6012822 | 765..17 | 3734 | 99.9 | Minus |
X | 23542271 | X | 5998946..5999499 | 765..221 | 1134 | 80.7 | Minus |
X | 23542271 | X | 6009021..6009159 | 901..763 | 680 | 99.3 | Minus |
X | 23542271 | X | 5998693..5998816 | 894..771 | 290 | 82.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:38:45 has no hits.
BO13523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:40 Download gff for
BO13523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-2-PA | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:14 Download gff for
BO13523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4746-PA | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:30 Download gff for
BO13523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 358..1248 | 14..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:10 Download gff for
BO13523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 358..1248 | 14..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:10 Download gff for
BO13523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6009017..6009157 | 765..904 | 98 | <- | Minus |
X | 6012075..6012824 | 14..764 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:30 Download gff for
BO13523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5903050..5903190 | 765..904 | 98 | <- | Minus |
arm_X | 5906108..5906857 | 14..764 | 99 | | Minus |
BO13523.complete Sequence
1129 bp assembled on 2007-10-17
GenBank Submission: FJ632808
> BO13523.complete
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
CGGAGGTAAAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCC
GCCTTTAAGTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCT
GCCGGGCATCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCG
AGGGATTCGACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAAC
TCCGCCATGGAGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAA
CCGGCTGCTGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGA
CCCTGCGTGATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAC
CACCTGAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGAT
GGAATGGGAGGAGAACTGCATCGCGGACCGGATCAATGGGATATTCCTGC
AGCTGATATCCTGCCTGCAGTGCCGCCGCTGTCCGCACTACTTCCTGCCC
AATATGGATCTGTTCAAGGGCAAGTCGCCGGGTGCCCTGGAGAATGCCGC
CAAGCAGGTTTGGCGGCTCACCCGGATCATGCTGACCAATGTCCGTTGCC
TGGAGGAGCTGGCAAGCTTTCTAGACCAT
BO13523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 1098 | CG4746-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
CG4766-RA | 1107 | CG4766-PA | 127..1058 | 143..1065 | 1865 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 2082 | CG4746-RA | 360..1454 | 17..1111 | 5475 | 100 | Plus |
CG4766-RA | 2673 | CG4766-RA | 728..1659 | 143..1065 | 1865 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6012074..6012822 | 765..17 | 3745 | 100 | Minus |
X | 23542271 | X | 6008811..6009159 | 1111..763 | 1745 | 100 | Minus |
X | 23542271 | X | 5998946..5999499 | 765..221 | 1145 | 80.9 | Minus |
X | 23542271 | X | 5998522..5998816 | 1065..771 | 650 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:42:07 has no hits.
BO13523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:59 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 1..1098 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:01 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 355..1458 | 14..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:17 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 360..1454 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:32 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 357..1451 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:41 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 360..1454 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:41 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6008809..6009157 | 765..1113 | 99 | <- | Minus |
X | 6012075..6012822 | 17..764 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:17 Download gff for
BO13523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5902842..5903190 | 765..1113 | 99 | <- | Minus |
arm_X | 5906108..5906855 | 17..764 | 100 | | Minus |
BO13523.pep Sequence
Translation from 16 to 1129
> BO13523.pep
MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE
VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA
YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW
PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG
ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN
CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR
LTRIMLTNVRCLEELASFLDH
BO13523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-PA | 365 | CG4746-PA | 1..365 | 1..365 | 1922 | 100 | Plus |
CG4766-PA | 368 | CG4766-PA | 1..368 | 1..365 | 1567 | 77.7 | Plus |