Clone Sequence Records
BO13524.3prime Sequence
611 bp (610 high quality bases) assembled on 2006-05-08
> BO13524.3prime
ATGGTCTAGAAAGCTTGCTCGTGGTTGGGGCGCCGGCAGAGGTCCGACTC
CTGGACACGGCATCCTTTTGGCCAGGTGCTTGCACAGCGGCACATCCCGC
ACAGCATCGCCGATGAACAGGGATAGAAGGTACCATTGCTTCATCCCACT
GACGCCCGATTGCACTTTGTAGTTCCGCAACACTTCCGACCAGGCAGCAT
GTGGCTTTGCTTTTCCATCAGGAAAGCGGCCATCAGAACTGCCTGAGTAT
CTAGAGGCATGGACACGGCACGGCTCCTCCAGGATGCAGGCTTGGGGTCC
GAACTCACCCAGTATCTGTTTCTGGGCCAGTTCAGCATCAAGAGCCAGAG
GATGAGCCGTATCCCTTCTGGTGCGAGATCTATATGTACTGGGACTGAGG
GAGTAGGCCAACTTCTTGGCGAACTGGGACAGGCGGACGGATAGCACGAT
TACGGGGAAGCCGACCAGCTGGACGGGAAGCTCGAAAAGGGGATCGGAAT
TCTGGGCCAGGCCCTCCTCCACGAATTCCAGCAGAAGCACCAGCAGCACG
CAGAGCGTTGGCACGAGAGCCACAGTGCAGATATACCGCAGATTCATGTC
GACTGATAACT
BO13524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-PA | 582 | CG7330-RA | 1..579 | 597..19 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 1166 | CG7330-RB | 123..702 | 598..19 | 2900 | 100 | Minus |
CG7330-RA | 986 | CG7330-RA | 123..702 | 598..19 | 2900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18150677..18150891 | 389..175 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 18149045..18149256 | 598..387 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 18153186..18153343 | 176..19 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:33:19 has no hits.
BO13524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:41 Download gff for
BO13524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-PA | 1..582 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:16 Download gff for
BO13524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-PA | 1..582 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:42 Download gff for
BO13524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..707 | 14..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:36 Download gff for
BO13524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..707 | 14..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:36 Download gff for
BO13524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18149045..18149253 | 390..598 | 100 | -> | Minus |
3L | 18150677..18150890 | 176..389 | 100 | -> | Minus |
3L | 18153187..18153348 | 14..175 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:42 Download gff for
BO13524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18142145..18142353 | 390..598 | 100 | -> | Minus |
arm_3L | 18143777..18143990 | 176..389 | 100 | -> | Minus |
arm_3L | 18146287..18146448 | 14..175 | 98 | | Minus |
BO13524.5prime Sequence
611 bp (610 high quality bases) assembled on 2006-05-08
> BO13524.5prime
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGAGCAAG
CTTTCTAGACC
BO13524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-PA | 582 | CG7330-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 1166 | CG7330-RB | 123..702 | 16..595 | 2900 | 100 | Plus |
CG7330-RA | 986 | CG7330-RA | 123..702 | 16..595 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18150677..18150891 | 225..439 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 18149045..18149256 | 16..227 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 18153186..18153343 | 438..595 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:20:05 has no hits.
BO13524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:42 Download gff for
BO13524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:18 Download gff for
BO13524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:39 Download gff for
BO13524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..707 | 16..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:46 Download gff for
BO13524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..707 | 16..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:46 Download gff for
BO13524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18149045..18149253 | 16..224 | 100 | -> | Plus |
3L | 18150677..18150890 | 225..438 | 100 | -> | Plus |
3L | 18153187..18153348 | 439..600 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:39 Download gff for
BO13524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18142145..18142353 | 16..224 | 100 | -> | Plus |
arm_3L | 18143777..18143990 | 225..438 | 100 | -> | Plus |
arm_3L | 18146287..18146448 | 439..600 | 98 | | Plus |
BO13524.complete Sequence
613 bp assembled on 2006-10-11
GenBank Submission: FJ632809
> BO13524.complete
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGAGCAAG
CTTTCTAGACCAT
BO13524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 582 | CG7330-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
CG7330-RA | 582 | CG7330-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 1166 | CG7330-RB | 123..702 | 16..595 | 2900 | 100 | Plus |
CG7330-RA | 986 | CG7330-RA | 123..702 | 16..595 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18150677..18150891 | 225..439 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 18149045..18149256 | 16..227 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 18153186..18153343 | 438..595 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:56:56 has no hits.
BO13524.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:52 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:54 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 121..705 | 16..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:49:41 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 124..702 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:52 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 121..705 | 16..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:53 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 124..702 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:53 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18153187..18153343 | 439..597 | 98 | | Plus |
3L | 18149046..18149253 | 17..224 | 100 | -> | Plus |
3L | 18150677..18150890 | 225..438 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:49:41 Download gff for
BO13524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18142146..18142353 | 17..224 | 100 | -> | Plus |
arm_3L | 18143777..18143990 | 225..438 | 100 | -> | Plus |
arm_3L | 18146287..18146443 | 439..597 | 98 | | Plus |
BO13524.pep Sequence
Translation from 16 to 613
> BO13524.pep
MNLRYICTVALVPTLCVLLVLLLEFVEEGLAQNSDPLFELPVQLVGFPVI
VLSVRLSQFAKKLAYSLSPSTYRSRTRRDTAHPLALDAELAQKQILGEFG
PQACILEEPCRVHASRYSGSSDGRFPDGKAKPHAAWSEVLRNYKVQSGVS
GMKQWYLLSLFIGDAVRDVPLCKHLAKRMPCPGVGPLPAPQPRASFLDH
BO13524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-PB | 193 | CG7330-PB | 1..193 | 1..193 | 1007 | 100 | Plus |
CG7330-PA | 193 | CG7330-PA | 1..193 | 1..193 | 1007 | 100 | Plus |