Clone BO13524 Report

Search the DGRC for BO13524

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG7330-RA
Protein status:BO13524.pep: validated full length
Sequenced Size:613

Clone Sequence Records

BO13524.3prime Sequence

611 bp (610 high quality bases) assembled on 2006-05-08

> BO13524.3prime
ATGGTCTAGAAAGCTTGCTCGTGGTTGGGGCGCCGGCAGAGGTCCGACTC
CTGGACACGGCATCCTTTTGGCCAGGTGCTTGCACAGCGGCACATCCCGC
ACAGCATCGCCGATGAACAGGGATAGAAGGTACCATTGCTTCATCCCACT
GACGCCCGATTGCACTTTGTAGTTCCGCAACACTTCCGACCAGGCAGCAT
GTGGCTTTGCTTTTCCATCAGGAAAGCGGCCATCAGAACTGCCTGAGTAT
CTAGAGGCATGGACACGGCACGGCTCCTCCAGGATGCAGGCTTGGGGTCC
GAACTCACCCAGTATCTGTTTCTGGGCCAGTTCAGCATCAAGAGCCAGAG
GATGAGCCGTATCCCTTCTGGTGCGAGATCTATATGTACTGGGACTGAGG
GAGTAGGCCAACTTCTTGGCGAACTGGGACAGGCGGACGGATAGCACGAT
TACGGGGAAGCCGACCAGCTGGACGGGAAGCTCGAAAAGGGGATCGGAAT
TCTGGGCCAGGCCCTCCTCCACGAATTCCAGCAGAAGCACCAGCAGCACG
CAGAGCGTTGGCACGAGAGCCACAGTGCAGATATACCGCAGATTCATGTC
GACTGATAACT

BO13524.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-PA 582 CG7330-RA 1..579 597..19 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 1166 CG7330-RB 123..702 598..19 2900 100 Minus
CG7330-RA 986 CG7330-RA 123..702 598..19 2900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18150677..18150891 389..175 1075 100 Minus
3L 28110227 3L 18149045..18149256 598..387 1060 100 Minus
3L 28110227 3L 18153186..18153343 176..19 790 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:33:19 has no hits.

BO13524.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:41 Download gff for BO13524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-PA 1..582 16..597 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:16 Download gff for BO13524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-PA 1..582 16..597 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:42 Download gff for BO13524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..707 14..598 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:36 Download gff for BO13524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..707 14..598 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:36 Download gff for BO13524.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18149045..18149253 390..598 100 -> Minus
3L 18150677..18150890 176..389 100 -> Minus
3L 18153187..18153348 14..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:42 Download gff for BO13524.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18142145..18142353 390..598 100 -> Minus
arm_3L 18143777..18143990 176..389 100 -> Minus
arm_3L 18146287..18146448 14..175 98   Minus

BO13524.5prime Sequence

611 bp (610 high quality bases) assembled on 2006-05-08

> BO13524.5prime
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGAGCAAG
CTTTCTAGACC

BO13524.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-PA 582 CG7330-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 1166 CG7330-RB 123..702 16..595 2900 100 Plus
CG7330-RA 986 CG7330-RA 123..702 16..595 2900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18150677..18150891 225..439 1075 100 Plus
3L 28110227 3L 18149045..18149256 16..227 1060 100 Plus
3L 28110227 3L 18153186..18153343 438..595 790 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:20:05 has no hits.

BO13524.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:42 Download gff for BO13524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-PA 1..582 17..598 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:18 Download gff for BO13524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-PA 1..582 17..598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:39 Download gff for BO13524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..707 16..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:46 Download gff for BO13524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..707 16..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:46 Download gff for BO13524.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18149045..18149253 16..224 100 -> Plus
3L 18150677..18150890 225..438 100 -> Plus
3L 18153187..18153348 439..600 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:39 Download gff for BO13524.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18142145..18142353 16..224 100 -> Plus
arm_3L 18143777..18143990 225..438 100 -> Plus
arm_3L 18146287..18146448 439..600 98   Plus

BO13524.complete Sequence

613 bp assembled on 2006-10-11

GenBank Submission: FJ632809

> BO13524.complete
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGAGCAAG
CTTTCTAGACCAT

BO13524.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 582 CG7330-PB 1..579 17..595 2895 100 Plus
CG7330-RA 582 CG7330-PA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 1166 CG7330-RB 123..702 16..595 2900 100 Plus
CG7330-RA 986 CG7330-RA 123..702 16..595 2900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18150677..18150891 225..439 1075 100 Plus
3L 28110227 3L 18149045..18149256 16..227 1060 100 Plus
3L 28110227 3L 18153186..18153343 438..595 790 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:56:56 has no hits.

BO13524.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:52 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 1..582 17..598 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:54 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 121..705 16..600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:49:41 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 124..702 17..597 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:52 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 121..705 16..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:53 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 124..702 17..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:53 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18153187..18153343 439..597 98   Plus
3L 18149046..18149253 17..224 100 -> Plus
3L 18150677..18150890 225..438 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:49:41 Download gff for BO13524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18142146..18142353 17..224 100 -> Plus
arm_3L 18143777..18143990 225..438 100 -> Plus
arm_3L 18146287..18146443 439..597 98   Plus

BO13524.pep Sequence

Translation from 16 to 613

> BO13524.pep
MNLRYICTVALVPTLCVLLVLLLEFVEEGLAQNSDPLFELPVQLVGFPVI
VLSVRLSQFAKKLAYSLSPSTYRSRTRRDTAHPLALDAELAQKQILGEFG
PQACILEEPCRVHASRYSGSSDGRFPDGKAKPHAAWSEVLRNYKVQSGVS
GMKQWYLLSLFIGDAVRDVPLCKHLAKRMPCPGVGPLPAPQPRASFLDH

BO13524.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-PB 193 CG7330-PB 1..193 1..193 1007 100 Plus
CG7330-PA 193 CG7330-PA 1..193 1..193 1007 100 Plus