Clone Sequence Records
BO13525.3prime Sequence
464 bp (463 high quality bases) assembled on 2006-05-08
> BO13525.3prime
ATGGTCTAGAAAGCTTGCACCGGAGCAGCCGCGACAACCGCAGTGGACAC
ACTCAACGATCCGACCCTCTTCCAGTTTGCATTTGGGCACCCGGCATATG
CAGTTCGTGCCGAAATTGGTGTCCCTCGTTTGAATGCAGCGCAGGCAGCA
TAGGTTCTCGTATCCAGACTTCTTCCACTTGGCAATCAGATTGCCATCGG
CAATCTTCTCCTTCAGACAGTAGTCGTACAATTCCCGGCTGATGGCTTTC
CGGCGATAGAATAGATCGTAGATGTATCGTGTCTTCTGGTGGTGGATCTT
GAAAATGGGCCAAAGGGATTCCGTAATGCGTTTGCCCTCGTGCGGTTCCG
TTTCGGCTTCGCGCATTTTTTGCTCCAGTTCCTCGAGAGTTGGTTCGATC
AGCTCCCAACCGTCTGGCGGTGGTTTGCGACTGCGGCGAACCTTGGGCAT
GTCGACTGATAACT
BO13525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1639-PA | 435 | l(1)10Bb-RA | 1..432 | 450..19 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)10Bb-RA | 934 | CG1639-RA | 124..555 | 450..19 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11324673..11325012 | 19..358 | 1700 | 100 | Plus |
| X | 23542271 | X | 11325092..11325185 | 357..450 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:12:22 has no hits.
BO13525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:43 Download gff for
BO13525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1639-PA | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:20 Download gff for
BO13525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1639-PA | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:45 Download gff for
BO13525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 116..561 | 11..458 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:03 Download gff for
BO13525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 116..561 | 11..458 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:03 Download gff for
BO13525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11324667..11325010 | 11..356 | 98 | <- | Plus |
| X | 11325092..11325193 | 357..458 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:45 Download gff for
BO13525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11218700..11219043 | 11..356 | 98 | <- | Plus |
| arm_X | 11219125..11219226 | 357..458 | 96 | | Plus |
BO13525.5prime Sequence
464 bp (463 high quality bases) assembled on 2006-05-08
> BO13525.5prime
GAAGTTATCAGTCGACATGCCCAAGGTTCGCCGCAGTCGCAAACCACCGC
CAGACGGTTGGGAGCTGATCGAACCAACTCTCGAGGAACTGGAGCAAAAA
ATGCGCGAAGCCGAAACGGAACCGCACGAGGGCAAACGCATTACGGAATC
CCTTTGGCCCATTTTCAAGATCCACCACCAGAAGACACGATACATCTACG
ATCTATTCTATCGCCGGAAAGCCATCAGCCGGGAATTGTACGACTACTGT
CTGAAGGAGAAGATTGCCGATGGCAATCTGATTGCCAAGTGGAAGAAGTC
TGGATACGAGAACCTATGCTGCCTGCGCTGCATTCAAACGAGGGACACCA
ATTTCGGCACGAACTGCATATGCCGGGTGCCCAAATGCAAACTGGAAGAG
GGTCGGATCGTTGAGTGTGTCCACTGCGGTTGTCGCGGCTGCTCCGGTGC
AAGCTTTCTAGACC
BO13525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1639-PA | 435 | l(1)10Bb-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)10Bb-RA | 934 | CG1639-RA | 124..555 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11324673..11325012 | 448..109 | 1700 | 100 | Minus |
| X | 23542271 | X | 11325092..11325185 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:51:50 has no hits.
BO13525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:44 Download gff for
BO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1639-PA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:21 Download gff for
BO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1639-PA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:21 Download gff for
BO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 116..561 | 9..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:14 Download gff for
BO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 116..561 | 9..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:14 Download gff for
BO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11324667..11325010 | 111..456 | 98 | <- | Minus |
| X | 11325092..11325193 | 9..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:21 Download gff for
BO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11219125..11219226 | 9..110 | 96 | | Minus |
| arm_X | 11218700..11219043 | 111..456 | 98 | <- | Minus |
BO13525.complete Sequence
466 bp assembled on 2006-10-11
GenBank Submission: FJ632810
> BO13525.complete
GAAGTTATCAGTCGACATGCCCAAGGTTCGCCGCAGTCGCAAACCACCGC
CAGACGGTTGGGAGCTGATCGAACCAACTCTCGAGGAACTGGAGCAAAAA
ATGCGCGAAGCCGAAACGGAACCGCACGAGGGCAAACGCATTACGGAATC
CCTTTGGCCCATTTTCAAGATCCACCACCAGAAGACACGATACATCTACG
ATCTATTCTATCGCCGGAAAGCCATCAGCCGGGAATTGTACGACTACTGT
CTGAAGGAGAAGATTGCCGATGGCAATCTGATTGCCAAGTGGAAGAAGTC
TGGATACGAGAACCTATGCTGCCTGCGCTGCATTCAAACGAGGGACACCA
ATTTCGGCACGAACTGCATATGCCGGGTGCCCAAATGCAAACTGGAAGAG
GGTCGGATCGTTGAGTGTGTCCACTGCGGTTGTCGCGGCTGCTCCGGTGC
AAGCTTTCTAGACCAT
BO13525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)10Bb-RA | 435 | CG1639-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)10Bb-RA | 934 | CG1639-RA | 124..555 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11324673..11325012 | 448..109 | 1700 | 100 | Minus |
| X | 23542271 | X | 11325092..11325185 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:24:23 has no hits.
BO13525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:10 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:29 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 107..552 | 9..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:57 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 124..555 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:10 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 107..552 | 9..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:01 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)10Bb-RA | 124..555 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:01 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11324671..11325010 | 111..450 | 99 | <- | Minus |
| X | 11325092..11325185 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:57 Download gff for
BO13525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11218704..11219043 | 111..450 | 99 | <- | Minus |
| arm_X | 11219125..11219218 | 17..110 | 100 | | Minus |
BO13525.pep Sequence
Translation from 16 to 466
> BO13525.pep
MPKVRRSRKPPPDGWELIEPTLEELEQKMREAETEPHEGKRITESLWPIF
KIHHQKTRYIYDLFYRRKAISRELYDYCLKEKIADGNLIAKWKKSGYENL
CCLRCIQTRDTNFGTNCICRVPKCKLEEGRIVECVHCGCRGCSGASFLDH
BO13525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)10Bb-PA | 144 | CG1639-PA | 1..144 | 1..144 | 808 | 100 | Plus |
