Clone BO13526 Report

Search the DGRC for BO13526

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG17273-RA
Protein status:BO13526.pep: validated full length
Sequenced Size:1375

Clone Sequence Records

BO13526.3prime Sequence

924 bp (875 high quality bases) assembled on 2006-05-08

> BO13526.3prime
ATGGTCTAGAAAGCTTGCATGCACATTGATGATGGACTCACGGCCCTTTC
CAACGCCCACCCAGCGCACGGGCACACTCAGCTCGCTCTCCAGAAACCGG
ACGTAGCTCTGGGCATTCTCCGGCAGCTCCTTGAAGTTGCGCACCTCCTC
AGTGGATGTCTGCCAGCCAGGCAGCACGGCGTACTCCACCTCGATGTTTC
CGAGCTCGGCAATGGTGCCGGGGAAGTGGTCAAGCTTCTCGCCATTGGGC
TTCTTGTAGGCCACGGCCACCTTGATCTCCGGCAGCGTGTCGAGAATATC
CAGCTTGGTCAGACAGATGCACGTGTAGCCGTTGACCAGCGAGGTGTACT
TCAGCAGCGGTATGTCCAGCCAGCCGCAGCGGCGCTTCCGCTTGGTAGTG
ACACCGACTTCAAAGCCGCGCGTCTGCAGCAAGTCGCCAATATCATTTAG
CTGCTCGGTGGGGAATGGACCGTCGCCCACTCGCGTCGTATAGGCCTTGA
CCACGCCAATCACCTCGCCAATCGTCTGCGGGGGCAGACCCAGGCCCGTG
AGAACACCGCCAATGCTGCAGTTGCTGCTCGTCACATACGGATACGTGCC
GAAGTCGATGTCCAGCATGGCCGCGTTGGCGCCTTCGACCAAGATCGTCT
TGCCGTTGCGCAGGGCAGTGTGCAGGAAGCAAATGGTGTCCTTGACATAG
GGACGAACCTTATCCGCGTAGTCCTTGTAGCGGGCCAGCTCGGCCTCTAC
GTCGACGTTAATCGATGGGAACAGGCGCACGTGCGTGGCCACAATCGACT
TGAACTTTTCGCTGAATAGATTGAAGTCGCCGAGCAGCTCGCCCACTCGG
ATGCCATTGCGGGTAGCCTTGCTGGAGTAAGCCGGACCGATGCCCTTCTT
GGTGTTGCCGAGCGACTTGCCGCC

BO13526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17273-PA 1344 CG17273-RA 436..1341 924..19 4505 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 570..1475 924..19 4515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20825143..20825568 19..444 2130 100 Plus
3R 32079331 3R 20825632..20825993 444..805 1810 100 Plus
3R 32079331 3R 20826062..20826182 804..924 590 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 10:10:17 has no hits.

BO13526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:45 Download gff for BO13526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-PA 436..1344 15..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:23 Download gff for BO13526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-PA 436..1344 15..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:27 Download gff for BO13526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 570..1478 15..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:22 Download gff for BO13526.3prime
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 570..1478 15..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:22 Download gff for BO13526.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20825140..20825568 15..444 99 <- Plus
3R 20825633..20825993 445..805 100 <- Plus
3R 20826064..20826182 806..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:27 Download gff for BO13526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16650862..16651290 15..444 99 <- Plus
arm_3R 16651355..16651715 445..805 100 <- Plus
arm_3R 16651786..16651904 806..924 99   Plus

BO13526.5prime Sequence

849 bp (847 high quality bases) assembled on 2006-05-08

> BO13526.5prime
GAAGTTATCAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACG
AGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTC
GTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACAT
GCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACG
CTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTG
CCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGGCGT
CGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAGCCA
AGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCAC
CTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGAGAA
GGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTTACT
CCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGAC
TTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCG
CCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCTACA
AGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTC
CTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAAGCGCCAA
CGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGAGCA
GCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCGCA

BO13526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17273-PA 1344 CG17273-RA 1..833 17..849 4140 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 135..967 17..849 4150 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20826062..20826344 572..290 1415 100 Minus
3R 32079331 3R 20825715..20825993 849..571 1380 99.6 Minus
3R 32079331 3R 20830275..20830446 188..17 860 100 Minus
3R 32079331 3R 20827979..20828085 291..185 535 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:04:18 has no hits.

BO13526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:46 Download gff for BO13526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:24 Download gff for BO13526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:07 Download gff for BO13526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 132..966 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:38 Download gff for BO13526.5prime
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 132..966 14..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:38 Download gff for BO13526.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20825716..20825993 571..848 99 <- Minus
3R 20826064..20826343 291..570 100 <- Minus
3R 20827980..20828082 188..290 100 <- Minus
3R 20830276..20830449 14..187 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:07 Download gff for BO13526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16651438..16651715 571..848 99 <- Minus
arm_3R 16651786..16652065 291..570 100 <- Minus
arm_3R 16653702..16653804 188..290 100 <- Minus
arm_3R 16655998..16656171 14..187 99   Minus

BO13526.complete Sequence

1375 bp assembled on 2007-10-17

GenBank Submission: FJ632811

> BO13526.complete
GAAGTTATCAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACG
AGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTC
GTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACAT
GCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACG
CTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTG
CCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGGCGT
CGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAGCCA
AGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCAC
CTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGAGAA
GGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTTACT
CCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGAC
TTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCG
CCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCTACA
AGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTC
CTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAGGCGCCAA
CGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGAGCA
GCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCGCAG
ACGATTGGCGAGGTGATTGGCGTGGTCAAGGCCTATACGACGCGAGTGGG
CGACGGTCCATTCCCCACCGAGCAGCTAAATGATATTGGCGACTTGCTGC
AGACGCGCGGCTTTGAAGTCGGTGTCACTACCAAGCGGAAGCGCCGCTGC
GGCTGGCTGGACATACCGCTGCTGAAGTACACCTCGCTGGTCAACGGCTA
CACGTGCATCTGTCTGACCAAGCTGGATATTCTCGACACGCTGCCGGAGA
TCAAGGTGGCCGTGGCCTACAAGAAGCCCAATGGCGAGAAGCTTGACCAC
TTCCCCGGCACCATTGCCGAGCTCGGAAACATCGAGGTGGAGTACGCCGT
GCTGCCTGGCTGGCAGACATCCACTGAGGAGGTGCGCAACTTCAAGGAGC
TGCCGGAGAATGCCCAGAGCTACGTCCGGTTTCTGGAGAGCGAGCTGAGT
GTGCCCGTGCGCTGGGTGGGCGTTGGAAAGGGCCGTGAGTCCATCATCAA
TGTGCATGCAAGCTTTCTAGACCAT

BO13526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1344 CG17273-PA 1..1341 17..1357 6705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 135..1475 17..1357 6705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20825143..20825568 1357..932 2130 100 Minus
3R 32079331 3R 20825632..20825993 932..571 1810 100 Minus
3R 32079331 3R 20826062..20826344 572..290 1415 100 Minus
3R 32079331 3R 20830275..20830446 188..17 860 100 Minus
3R 32079331 3R 20827979..20828085 291..185 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:16:57 has no hits.

BO13526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:00 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1344 17..1361 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:02 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 167..1513 14..1361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:39 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 135..1475 17..1359 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:44 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 170..1510 17..1359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:42 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 135..1475 17..1359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:42 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20826064..20826343 291..570 100 <- Minus
3R 20827980..20828082 188..290 100 <- Minus
3R 20830276..20830446 17..187 100   Minus
3R 20825141..20825568 932..1359 99 <- Minus
3R 20825633..20825993 571..931 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:39 Download gff for BO13526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16650863..16651290 932..1359 99 <- Minus
arm_3R 16651355..16651715 571..931 100 <- Minus
arm_3R 16651786..16652065 291..570 100 <- Minus
arm_3R 16653702..16653804 188..290 100 <- Minus
arm_3R 16655998..16656168 17..187 100   Minus

BO13526.pep Sequence

Translation from 16 to 1375

> BO13526.pep
MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV
DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP
SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL
GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI
NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD
IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP
TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL
TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ
TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVHASF
LDH

BO13526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-PA 447 CG17273-PA 1..447 1..447 2339 100 Plus