Clone Sequence Records
BO13526.3prime Sequence
924 bp (875 high quality bases) assembled on 2006-05-08
> BO13526.3prime
ATGGTCTAGAAAGCTTGCATGCACATTGATGATGGACTCACGGCCCTTTC
CAACGCCCACCCAGCGCACGGGCACACTCAGCTCGCTCTCCAGAAACCGG
ACGTAGCTCTGGGCATTCTCCGGCAGCTCCTTGAAGTTGCGCACCTCCTC
AGTGGATGTCTGCCAGCCAGGCAGCACGGCGTACTCCACCTCGATGTTTC
CGAGCTCGGCAATGGTGCCGGGGAAGTGGTCAAGCTTCTCGCCATTGGGC
TTCTTGTAGGCCACGGCCACCTTGATCTCCGGCAGCGTGTCGAGAATATC
CAGCTTGGTCAGACAGATGCACGTGTAGCCGTTGACCAGCGAGGTGTACT
TCAGCAGCGGTATGTCCAGCCAGCCGCAGCGGCGCTTCCGCTTGGTAGTG
ACACCGACTTCAAAGCCGCGCGTCTGCAGCAAGTCGCCAATATCATTTAG
CTGCTCGGTGGGGAATGGACCGTCGCCCACTCGCGTCGTATAGGCCTTGA
CCACGCCAATCACCTCGCCAATCGTCTGCGGGGGCAGACCCAGGCCCGTG
AGAACACCGCCAATGCTGCAGTTGCTGCTCGTCACATACGGATACGTGCC
GAAGTCGATGTCCAGCATGGCCGCGTTGGCGCCTTCGACCAAGATCGTCT
TGCCGTTGCGCAGGGCAGTGTGCAGGAAGCAAATGGTGTCCTTGACATAG
GGACGAACCTTATCCGCGTAGTCCTTGTAGCGGGCCAGCTCGGCCTCTAC
GTCGACGTTAATCGATGGGAACAGGCGCACGTGCGTGGCCACAATCGACT
TGAACTTTTCGCTGAATAGATTGAAGTCGCCGAGCAGCTCGCCCACTCGG
ATGCCATTGCGGGTAGCCTTGCTGGAGTAAGCCGGACCGATGCCCTTCTT
GGTGTTGCCGAGCGACTTGCCGCC
BO13526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17273-PA | 1344 | CG17273-RA | 436..1341 | 924..19 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdSS-RA | 1951 | CG17273-RA | 570..1475 | 924..19 | 4515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20825143..20825568 | 19..444 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 20825632..20825993 | 444..805 | 1810 | 100 | Plus |
3R | 32079331 | 3R | 20826062..20826182 | 804..924 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:10:17 has no hits.
BO13526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:45 Download gff for
BO13526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-PA | 436..1344 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:23 Download gff for
BO13526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-PA | 436..1344 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:27 Download gff for
BO13526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 570..1478 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:22 Download gff for
BO13526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdSS-RA | 570..1478 | 15..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:22 Download gff for
BO13526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20825140..20825568 | 15..444 | 99 | <- | Plus |
3R | 20825633..20825993 | 445..805 | 100 | <- | Plus |
3R | 20826064..20826182 | 806..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:27 Download gff for
BO13526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16650862..16651290 | 15..444 | 99 | <- | Plus |
arm_3R | 16651355..16651715 | 445..805 | 100 | <- | Plus |
arm_3R | 16651786..16651904 | 806..924 | 99 | | Plus |
BO13526.5prime Sequence
849 bp (847 high quality bases) assembled on 2006-05-08
> BO13526.5prime
GAAGTTATCAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACG
AGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTC
GTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACAT
GCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACG
CTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTG
CCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGGCGT
CGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAGCCA
AGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCAC
CTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGAGAA
GGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTTACT
CCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGAC
TTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCG
CCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCTACA
AGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTC
CTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAAGCGCCAA
CGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGAGCA
GCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCGCA
BO13526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17273-PA | 1344 | CG17273-RA | 1..833 | 17..849 | 4140 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdSS-RA | 1951 | CG17273-RA | 135..967 | 17..849 | 4150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20826062..20826344 | 572..290 | 1415 | 100 | Minus |
3R | 32079331 | 3R | 20825715..20825993 | 849..571 | 1380 | 99.6 | Minus |
3R | 32079331 | 3R | 20830275..20830446 | 188..17 | 860 | 100 | Minus |
3R | 32079331 | 3R | 20827979..20828085 | 291..185 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:04:18 has no hits.
BO13526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:46 Download gff for
BO13526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:24 Download gff for
BO13526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:07 Download gff for
BO13526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 132..966 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:38 Download gff for
BO13526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdSS-RA | 132..966 | 14..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:38 Download gff for
BO13526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20825716..20825993 | 571..848 | 99 | <- | Minus |
3R | 20826064..20826343 | 291..570 | 100 | <- | Minus |
3R | 20827980..20828082 | 188..290 | 100 | <- | Minus |
3R | 20830276..20830449 | 14..187 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:07 Download gff for
BO13526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16651438..16651715 | 571..848 | 99 | <- | Minus |
arm_3R | 16651786..16652065 | 291..570 | 100 | <- | Minus |
arm_3R | 16653702..16653804 | 188..290 | 100 | <- | Minus |
arm_3R | 16655998..16656171 | 14..187 | 99 | | Minus |
BO13526.complete Sequence
1375 bp assembled on 2007-10-17
GenBank Submission: FJ632811
> BO13526.complete
GAAGTTATCAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACG
AGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTC
GTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACAT
GCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACG
CTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTG
CCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGGCGT
CGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAGCCA
AGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCAC
CTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGAGAA
GGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTTACT
CCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGAC
TTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCG
CCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCTACA
AGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTC
CTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAGGCGCCAA
CGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGAGCA
GCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCGCAG
ACGATTGGCGAGGTGATTGGCGTGGTCAAGGCCTATACGACGCGAGTGGG
CGACGGTCCATTCCCCACCGAGCAGCTAAATGATATTGGCGACTTGCTGC
AGACGCGCGGCTTTGAAGTCGGTGTCACTACCAAGCGGAAGCGCCGCTGC
GGCTGGCTGGACATACCGCTGCTGAAGTACACCTCGCTGGTCAACGGCTA
CACGTGCATCTGTCTGACCAAGCTGGATATTCTCGACACGCTGCCGGAGA
TCAAGGTGGCCGTGGCCTACAAGAAGCCCAATGGCGAGAAGCTTGACCAC
TTCCCCGGCACCATTGCCGAGCTCGGAAACATCGAGGTGGAGTACGCCGT
GCTGCCTGGCTGGCAGACATCCACTGAGGAGGTGCGCAACTTCAAGGAGC
TGCCGGAGAATGCCCAGAGCTACGTCCGGTTTCTGGAGAGCGAGCTGAGT
GTGCCCGTGCGCTGGGTGGGCGTTGGAAAGGGCCGTGAGTCCATCATCAA
TGTGCATGCAAGCTTTCTAGACCAT
BO13526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdSS-RA | 1344 | CG17273-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdSS-RA | 1951 | CG17273-RA | 135..1475 | 17..1357 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20825143..20825568 | 1357..932 | 2130 | 100 | Minus |
3R | 32079331 | 3R | 20825632..20825993 | 932..571 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 20826062..20826344 | 572..290 | 1415 | 100 | Minus |
3R | 32079331 | 3R | 20830275..20830446 | 188..17 | 860 | 100 | Minus |
3R | 32079331 | 3R | 20827979..20828085 | 291..185 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:57 has no hits.
BO13526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:00 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 1..1344 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:02 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 167..1513 | 14..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:39 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 135..1475 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:44 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 170..1510 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:42 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdSS-RA | 135..1475 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:42 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20826064..20826343 | 291..570 | 100 | <- | Minus |
3R | 20827980..20828082 | 188..290 | 100 | <- | Minus |
3R | 20830276..20830446 | 17..187 | 100 | | Minus |
3R | 20825141..20825568 | 932..1359 | 99 | <- | Minus |
3R | 20825633..20825993 | 571..931 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:39 Download gff for
BO13526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16650863..16651290 | 932..1359 | 99 | <- | Minus |
arm_3R | 16651355..16651715 | 571..931 | 100 | <- | Minus |
arm_3R | 16651786..16652065 | 291..570 | 100 | <- | Minus |
arm_3R | 16653702..16653804 | 188..290 | 100 | <- | Minus |
arm_3R | 16655998..16656168 | 17..187 | 100 | | Minus |
BO13526.pep Sequence
Translation from 16 to 1375
> BO13526.pep
MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV
DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP
SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL
GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI
NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD
IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP
TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL
TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ
TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVHASF
LDH
BO13526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdSS-PA | 447 | CG17273-PA | 1..447 | 1..447 | 2339 | 100 | Plus |