Clone Sequence Records
BO13527.3prime Sequence
868 bp (763 high quality bases) assembled on 2006-05-08
> BO13527.3prime
ATGGTCTAGAAAGCTTGCCACGGAACATGCGATGTTGTGGTAGTTGGTCT
GTGTGCATCCCTGGTTGCGCTCGTCGAAGTAGTAGCCCGTTGGGCACTGG
CCCAGGCTGACGGTCACTCCGCCGGAGCAACGTCCATAGCTCTGGCAATC
GCCGGCGACGTTTACGTAGGTGATGTTGGTGCCCACACACCTGTCCAGCT
GGCAGCGTACGTTAAGTCTGTCGCGGCACGAGAGCTTCTCGAAGTCGAAG
TACTGGCCAAGTGGACAGCTCAGGTGCTTGGGCTCCGTGTCGTGCTTGCC
GGCGACGGGGCTGCCACAGATATAGTAGTGGGAGCAGGACTCGTCGTCGG
CAAAGTAGCCAACGCGAGCGGATCCGGTGGCACTGTCCAGGCAGAAGGTG
TTTTCCGGTTCCGGCAGGGCGGCACTCTCGTAGCAGGACACCTCAGCCAC
ATCCACGCAGTAGCCGAGATTAGCATCGTAGGCACTGGCCACTGGACAGG
CTCGGCTGTGCAAGACCTCGCTGACGCACTCGTAGTACTGGTCACAGTGG
ACGGGATCGGCCAGACGGGTGTTGTTCGGCAGGGATCGGCAGGCGGGACT
GGTCTTCTTCGTCTGGCTGATGGGGCAACGGTACTGCTTTTCGTACACGC
AAGACCTCGATACGGGATGGAAGATCAGCTCGTTGGGACAGTTGGCCTTG
ATCTGCTTGTGCGACTTGCACAAGATGTAGCCGCGACAATCGCTGCTGCT
GGGATCCACGATGAAAGCGCCTTCCGTTTCGTTGGCGCACAGGTTCCTGG
CCTTGTCCGCAATGCTGTCGGCATAGGGACACACCGCGGCGCTGGAAGAT
GCCAGGATGCAGCGGCCT
BO13527.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-PA | 1080 | CG7017-RA | 228..1077 | 868..19 | 4175 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-RB | 1560 | CG7017-RB | 317..1166 | 868..19 | 4205 | 99.6 | Minus |
| CG7017-RA | 1414 | CG7017-RA | 317..1166 | 868..19 | 4205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20210686..20211535 | 19..868 | 4205 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:18:25 has no hits.
BO13527.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:47 Download gff for
BO13527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-PA | 228..1080 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:26 Download gff for
BO13527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-PA | 228..1080 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:12 Download gff for
BO13527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 357..1215 | 9..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:00 Download gff for
BO13527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 317..1175 | 9..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:00 Download gff for
BO13527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20210677..20211535 | 9..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:12 Download gff for
BO13527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20203777..20204635 | 9..868 | 99 | | Plus |
BO13527.5prime Sequence
854 bp (790 high quality bases) assembled on 2006-05-08
> BO13527.5prime
GAAGTTATCAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGT
TTGTGGCCAGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCG
GTGGCCGAGATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACC
GAATACCTGCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGG
AGCAGGGCGGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGC
TGCATCCTGGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCAT
TGCGGACAAGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCA
TCGTGGATCCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCG
CACAAGCAGATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGT
ATCGAGGTCTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGA
CGAAGAAGACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTG
GCCGATCCCGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTT
GCACAGCCGAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCT
ACTGCGTGGATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCG
GAACCGGAAAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCGCGT
TGGCTACTTTGCCGACGACGAGTCCTGCTCCCACTACTATATCTGTGGCA
GCCCCGTCGCCGGCAAGCACGACACGGAGCCCAAGCACCTGAGCTGTCCA
CTTG
BO13527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-PA | 1080 | CG7017-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-RB | 1560 | CG7017-RB | 88..927 | 15..854 | 4200 | 100 | Plus |
| CG7017-RA | 1414 | CG7017-RA | 88..927 | 15..854 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20210925..20211754 | 854..25 | 4150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:23:27 has no hits.
BO13527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:48 Download gff for
BO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:27 Download gff for
BO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:49 Download gff for
BO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 128..967 | 15..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:46 Download gff for
BO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 88..927 | 15..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:46 Download gff for
BO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20210925..20211754 | 25..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:49 Download gff for
BO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20204025..20204854 | 25..854 | 100 | | Minus |
BO13527.complete Sequence
1111 bp assembled on 2006-10-11
GenBank Submission: FJ632812
> BO13527.complete
GAAGTTATCAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGT
TTGTGGCCAGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCG
GTGGCCGAGATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACC
GAATACCTGCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGG
AGCAGGGCGGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGC
TGCATCCTGGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCAT
TGCGGACAAGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCA
TCGTGGATCCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCG
CACAAGCAGATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGT
ATCGAGGTCTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGA
CGAAGAAGACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTG
GCCGATCCCGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTT
GCACAGCCGAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCT
ACTGCGTGGATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCG
GAACCGGAAAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCGCGT
TGGCTACTTTGCCGACGACGAGTCCTGCTCCCACTACTATATCTGTGGCA
GCCCCGTCGCCGGCAAGCACGACACGGAGCCCAAGCACCTGAGCTGTCCA
CTTGGCCAGTACTTCGACTTCGAGAAGCTCTCGTGCCGCGACAGACTTAA
CGTACGCTGCCAGCTGGACAGGTGTGTGGGCACCAACATCACCTACGTAA
ACGTCGCCGGCGATTGCCAGAGCTATGGACGTTGCTCCGGCGGAGTGACC
GTCAGCCTGGGCCAGTGCCCAACGGGCTACTACTTCGACGAGCGCAACCA
GGGATGCACACAGACCAACTACCACAACATCGCATGTTCCGTGGCAAGCT
TTCTAGACCAT
BO13527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-RB | 1080 | CG7017-PB | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| CG7017-RA | 1080 | CG7017-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-RB | 1560 | CG7017-RB | 88..1166 | 15..1093 | 5395 | 100 | Plus |
| CG7017-RA | 1414 | CG7017-RA | 88..1166 | 15..1093 | 5395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20210686..20211754 | 1093..25 | 5345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:17 has no hits.
BO13527.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:11 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 1..1080 | 17..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:31 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 84..1171 | 15..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:26 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 130..1206 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:11 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 84..1171 | 15..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:46 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 90..1166 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:46 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20210684..20211754 | 25..1095 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:26 Download gff for
BO13527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20203784..20204854 | 25..1095 | 99 | | Minus |
BO13527.pep Sequence
Translation from 16 to 1111
> BO13527.pep
MNRASGVLSLLFVASALGGVIEDFEYLSVAEMCDLLPQETSFLRPNTCDN
WVRCASNYSVLEQGGCAAGLNYNKELGRCILASSSAAVCPYADSIADKAT
NLCANETEGAFIVDPSSSDCRGYILCKSHKQIKANCPNELIFHPVSRSCV
YEKQYRCPISQTKKTSPACRSLPNNTRLADPVHCDQYYECVSEVLHSRAC
PVASAYDANLGYCVDVAEVSCYESAALPEPENTFCLDSATGSARVGYFAD
DESCSHYYICGSPVAGKHDTEPKHLSCPLGQYFDFEKLSCRDRLNVRCQL
DRCVGTNITYVNVAGDCQSYGRCSGGVTVSLGQCPTGYYFDERNQGCTQT
NYHNIACSVASFLDH
BO13527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-PB | 359 | CG7017-PB | 1..359 | 1..359 | 1963 | 100 | Plus |
| CG7017-PA | 359 | CG7017-PA | 1..359 | 1..359 | 1963 | 100 | Plus |
| CG6996-PC | 364 | CG6996-PC | 28..334 | 32..360 | 324 | 27.2 | Plus |
| CG6996-PB | 364 | CG6996-PB | 28..334 | 32..360 | 324 | 27.2 | Plus |
| CG7290-PB | 419 | CG7290-PB | 26..330 | 27..347 | 315 | 26.1 | Plus |
