Clone BO13528 Report

Search the DGRC for BO13528

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCpr65Eb-RA
Protein status:BO13528.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO13528.3prime Sequence

569 bp (568 high quality bases) assembled on 2006-05-08

> BO13528.3prime
ATGGTCTAGAAAGCTTGCTAGCTTCCTGTCGTAGGGCAGGACCTGACCCA
CAGACAACACTGGCGATGACGCAGGTGCGAGCAGAGCACCGGCTGGCTGC
AGATACTGCTTGCCCTGCTCCTGACCATGGCTCTGGTGATGCTCATGGTG
GTCATGGTGATGGTCGTGGTGCTCGTACTCCCCATCCTCCTCCGGGTGGT
TGCGATTGTACTCCAGCGACTTCAGGATTGCCTCGGGAATGGGATGGGGC
GTGGGCAGGTGCTCGCCCTGCGGCTGGAATCCGTTCTCATCTGCCGTGTA
GGTCAACTGGATGAGCTGGCCCTCGGGTGTGTAGTACTGTGATGAGCCGC
TAGCGTAGTAACCACCCACTCCCTGCTCCTGCTGCGCAATCCCGTTGGAC
GTCTCGAACTGGTAATTGTAGATGCCATCCTCCTGCTTCAGTTCGTTGAC
AAAGCTCCGGATCTCGGCATGGGCATCCGGGGAATCGGAAGGCCGAGCCT
GGACACCGAGCAGCACGGACATGGCCACAAGTACAACGACGTTGATCTTC
GACATGTCGACTGATAACT

BO13528.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8638-PA 540 CG8638-RA 1..537 555..19 2685 100 Minus
CG12330-PA 720 CG12330-RA 547..581 285..251 150 97.1 Minus
CG8634-PA 384 CG8634-RA 214..245 327..296 135 96.8 Minus
CG30045-PA 993 CG30045-RA 751..782 279..248 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1004 CG8638-RA 79..615 555..19 2685 100 Minus
Cpr65Ec-RA 566 CG8634-RA 187..424 434..197 290 75.8 Minus
Cpr65Az-RA 720 CG12330-RA 527..597 305..235 205 87.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7088102..7088626 19..543 2625 100 Plus
3L 28110227 3L 7093462..7093699 434..197 275 74.4 Minus
3L 28110227 3L 6161396..6161466 305..235 205 85.9 Minus
Blast to na_te.dros performed on 2015-02-12 12:28:56 has no hits.

BO13528.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:49 Download gff for BO13528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8638-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:29 Download gff for BO13528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8638-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:31 Download gff for BO13528.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 12..563 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:19:36 Download gff for BO13528.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 12..563 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:19:36 Download gff for BO13528.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7088095..7088626 12..543 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:31 Download gff for BO13528.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7081195..7081726 12..543 99 <- Plus

BO13528.5prime Sequence

569 bp (568 high quality bases) assembled on 2006-05-08

> BO13528.5prime
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTAGCAAGCTTTCTAGACC

BO13528.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8638-PA 540 CG8638-RA 1..537 17..553 2685 100 Plus
CG12330-PA 720 CG12330-RA 547..581 287..321 150 97.1 Plus
CG8634-PA 384 CG8634-RA 214..245 245..276 135 96.8 Plus
CG30045-PA 993 CG30045-RA 751..782 293..324 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1004 CG8638-RA 79..615 17..553 2685 100 Plus
Cpr65Ec-RA 566 CG8634-RA 187..424 138..375 290 75.8 Plus
Cpr65Az-RA 720 CG12330-RA 527..597 267..337 205 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7088102..7088626 553..29 2625 100 Minus
3L 28110227 3L 7093462..7093699 138..375 275 74.4 Plus
3L 28110227 3L 6161396..6161466 267..337 205 85.9 Plus
Blast to na_te.dros performed on 2015-02-12 06:28:27 has no hits.

BO13528.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:50 Download gff for BO13528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8638-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:30 Download gff for BO13528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8638-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:20 Download gff for BO13528.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 9..560 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:44 Download gff for BO13528.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 9..560 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:44 Download gff for BO13528.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7088095..7088626 29..560 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:20 Download gff for BO13528.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7081195..7081726 29..560 99 <- Minus

BO13528.complete Sequence

571 bp assembled on 2006-10-11

GenBank Submission: FJ632813

> BO13528.complete
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTAGCAAGCTTTCTAGACCAT

BO13528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 540 CG8638-PA 1..537 17..553 2685 100 Plus
Cpr65Ec-RA 384 CG8634-PA 107..344 138..375 275 74.4 Plus
Cpr65Az-RA 720 CG12330-PA 527..597 267..337 205 85.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1004 CG8638-RA 79..615 17..553 2685 100 Plus
Cpr65Ec-RA 566 CG8634-RA 187..424 138..375 275 74.4 Plus
Cpr65Az-RA 720 CG12330-RA 527..597 267..337 205 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7088102..7088626 553..29 2625 100 Minus
3L 28110227 3L 7093462..7093699 138..375 275 74.4 Plus
3L 28110227 3L 6161396..6161466 267..337 205 85.9 Plus
Blast to na_te.dros performed on 2014-11-27 15:23:56 has no hits.

BO13528.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:12 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:32 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 68..620 9..560 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:17 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 79..615 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:12 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 68..620 9..560 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:45 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 79..615 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:45 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7088100..7088626 29..555 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:17 Download gff for BO13528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7081200..7081726 29..555 99 <- Minus

BO13528.pep Sequence

Translation from 16 to 571

> BO13528.pep
MSKINVVVLVAMSVLLGVQARPSDSPDAHAEIRSFVNELKQEDGIYNYQF
ETSNGIAQQEQGVGGYYASGSSQYYTPEGQLIQLTYTADENGFQPQGEHL
PTPHPIPEAILKSLEYNRNHPEEDGEYEHHDHHHDHHEHHQSHGQEQGKQ
YLQPAGALLAPASSPVLSVGQVLPYDRKLASFLDH

BO13528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-PA 179 CG8638-PA 1..179 1..179 959 100 Plus
Cpr65Ec-PA 127 CG8634-PA 1..119 1..124 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 5..118 8..122 313 53 Plus
Cpr67Fa1-PA 134 CG7941-PA 5..118 8..122 312 52.2 Plus
Cpr67Fb-PA 122 CG18348-PA 2..114 4..121 271 45.8 Plus