Clone Sequence Records
BO13528.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-05-08
> BO13528.3prime
ATGGTCTAGAAAGCTTGCTAGCTTCCTGTCGTAGGGCAGGACCTGACCCA
CAGACAACACTGGCGATGACGCAGGTGCGAGCAGAGCACCGGCTGGCTGC
AGATACTGCTTGCCCTGCTCCTGACCATGGCTCTGGTGATGCTCATGGTG
GTCATGGTGATGGTCGTGGTGCTCGTACTCCCCATCCTCCTCCGGGTGGT
TGCGATTGTACTCCAGCGACTTCAGGATTGCCTCGGGAATGGGATGGGGC
GTGGGCAGGTGCTCGCCCTGCGGCTGGAATCCGTTCTCATCTGCCGTGTA
GGTCAACTGGATGAGCTGGCCCTCGGGTGTGTAGTACTGTGATGAGCCGC
TAGCGTAGTAACCACCCACTCCCTGCTCCTGCTGCGCAATCCCGTTGGAC
GTCTCGAACTGGTAATTGTAGATGCCATCCTCCTGCTTCAGTTCGTTGAC
AAAGCTCCGGATCTCGGCATGGGCATCCGGGGAATCGGAAGGCCGAGCCT
GGACACCGAGCAGCACGGACATGGCCACAAGTACAACGACGTTGATCTTC
GACATGTCGACTGATAACT
BO13528.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8638-PA | 540 | CG8638-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
CG12330-PA | 720 | CG12330-RA | 547..581 | 285..251 | 150 | 97.1 | Minus |
CG8634-PA | 384 | CG8634-RA | 214..245 | 327..296 | 135 | 96.8 | Minus |
CG30045-PA | 993 | CG30045-RA | 751..782 | 279..248 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 1004 | CG8638-RA | 79..615 | 555..19 | 2685 | 100 | Minus |
Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 434..197 | 290 | 75.8 | Minus |
Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 305..235 | 205 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7088102..7088626 | 19..543 | 2625 | 100 | Plus |
3L | 28110227 | 3L | 7093462..7093699 | 434..197 | 275 | 74.4 | Minus |
3L | 28110227 | 3L | 6161396..6161466 | 305..235 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:28:56 has no hits.
BO13528.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:49 Download gff for
BO13528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8638-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:29 Download gff for
BO13528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8638-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:31 Download gff for
BO13528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 12..563 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:19:36 Download gff for
BO13528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 12..563 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:19:36 Download gff for
BO13528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7088095..7088626 | 12..543 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:31 Download gff for
BO13528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7081195..7081726 | 12..543 | 99 | <- | Plus |
BO13528.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-05-08
> BO13528.5prime
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTAGCAAGCTTTCTAGACC
BO13528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8638-PA | 540 | CG8638-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
CG12330-PA | 720 | CG12330-RA | 547..581 | 287..321 | 150 | 97.1 | Plus |
CG8634-PA | 384 | CG8634-RA | 214..245 | 245..276 | 135 | 96.8 | Plus |
CG30045-PA | 993 | CG30045-RA | 751..782 | 293..324 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 1004 | CG8638-RA | 79..615 | 17..553 | 2685 | 100 | Plus |
Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 138..375 | 290 | 75.8 | Plus |
Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 267..337 | 205 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7088102..7088626 | 553..29 | 2625 | 100 | Minus |
3L | 28110227 | 3L | 7093462..7093699 | 138..375 | 275 | 74.4 | Plus |
3L | 28110227 | 3L | 6161396..6161466 | 267..337 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:28:27 has no hits.
BO13528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:50 Download gff for
BO13528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8638-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:30 Download gff for
BO13528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8638-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:20 Download gff for
BO13528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:44 Download gff for
BO13528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 9..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:44 Download gff for
BO13528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7088095..7088626 | 29..560 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:20 Download gff for
BO13528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7081195..7081726 | 29..560 | 99 | <- | Minus |
BO13528.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ632813
> BO13528.complete
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTAGCAAGCTTTCTAGACCAT
BO13528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 540 | CG8638-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Cpr65Ec-RA | 384 | CG8634-PA | 107..344 | 138..375 | 275 | 74.4 | Plus |
Cpr65Az-RA | 720 | CG12330-PA | 527..597 | 267..337 | 205 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 1004 | CG8638-RA | 79..615 | 17..553 | 2685 | 100 | Plus |
Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 138..375 | 275 | 74.4 | Plus |
Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 267..337 | 205 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7088102..7088626 | 553..29 | 2625 | 100 | Minus |
3L | 28110227 | 3L | 7093462..7093699 | 138..375 | 275 | 74.4 | Plus |
3L | 28110227 | 3L | 6161396..6161466 | 267..337 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:23:56 has no hits.
BO13528.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:12 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:32 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 68..620 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:17 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 79..615 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:12 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 68..620 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:45 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 79..615 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:45 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7088100..7088626 | 29..555 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:17 Download gff for
BO13528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7081200..7081726 | 29..555 | 99 | <- | Minus |
BO13528.pep Sequence
Translation from 16 to 571
> BO13528.pep
MSKINVVVLVAMSVLLGVQARPSDSPDAHAEIRSFVNELKQEDGIYNYQF
ETSNGIAQQEQGVGGYYASGSSQYYTPEGQLIQLTYTADENGFQPQGEHL
PTPHPIPEAILKSLEYNRNHPEEDGEYEHHDHHHDHHEHHQSHGQEQGKQ
YLQPAGALLAPASSPVLSVGQVLPYDRKLASFLDH
BO13528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-PA | 179 | CG8638-PA | 1..179 | 1..179 | 959 | 100 | Plus |
Cpr65Ec-PA | 127 | CG8634-PA | 1..119 | 1..124 | 374 | 62.1 | Plus |
Cpr67Fa2-PA | 134 | CG18349-PA | 5..118 | 8..122 | 313 | 53 | Plus |
Cpr67Fa1-PA | 134 | CG7941-PA | 5..118 | 8..122 | 312 | 52.2 | Plus |
Cpr67Fb-PA | 122 | CG18348-PA | 2..114 | 4..121 | 271 | 45.8 | Plus |