Clone Sequence Records
BO13529.3prime Sequence
812 bp (710 high quality bases) assembled on 2006-05-08
> BO13529.3prime
ATGGTCTAGAAAGCTTGCTTCGTAGTGGTTCGGCTGTGGATTGGGGTTAT
TCCAGCCCTCGTCCACGGCATCAGATCCTCCGCGACCCAGCCAGGCCATA
AGATAGACGAACAAGACAAAGGCCAAAATGCCGGCGGTCACCAGGAACCA
AGTGCGACGCCACGGCGGCCGCGAGGAGGGCGCATAGAAGCGGCGTGTCC
ATCGCGAGAACAATTCCGCAGGAGTGCGGCGCTGGTACTTATTATCGTCT
CGATCTGTCCCACCAATTGGCGACTGACGGGGCAGCAGCGGTCTTCTGCT
GCTGGCGTAGTCGCCCGCACTTGGGGGATTAAATGCATCCATTAGGAGCA
CGGAATGTGGGCTCACGGCGTCATGGCCATTGGGCTTCGTGCGCTCTCGC
TCGCCACCGGAATGGATGTGGTGCACTTTGGTCATGTTGCTGACAGCCGC
CTGGCTTGCCACCTTGGGCTTAATGGCCTTCAGACTGCTGCTCTGCTCCT
CAGAGAGCAGGGCGAGTCCCAGGCCATTTCTGCCCCAGTTAACCTGCGAC
AGGAAACTCTTCAGAGCATCGGCCACCGGGGAGACCAGGTTGGCGTTGGG
AAAGATCTCCACACTGCAGGCGGGGCACTGGTGACCCCGAGGGGCTGTGT
TGGCAGGCAGTGCGGCTTGGCGGGCGTTCAGGCAGTCCCAGTGGAAAACA
TGGTAGCAGACGAGGCGCACGCAATCGCCCTGCTCCAATGTGGTGCCGCA
CAGAGTGCAGTTGGAGATGTAGTCGCTGTCCCGCAGCCACTGCAGATACG
ACTGCACAATGC
BO13529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-PB | 900 | CG5382-RB | 104..897 | 812..19 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 1165 | CG5382-RB | 274..1067 | 812..19 | 3970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22364671..22364958 | 19..306 | 1440 | 100 | Plus |
3R | 32079331 | 3R | 22365019..22365225 | 306..512 | 1020 | 99.5 | Plus |
3R | 32079331 | 3R | 22365276..22365469 | 508..701 | 970 | 100 | Plus |
3R | 32079331 | 3R | 22365537..22365647 | 702..812 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:17:31 has no hits.
BO13529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:52 Download gff for
BO13529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-PB | 104..900 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:32 Download gff for
BO13529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-PB | 104..900 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:04 Download gff for
BO13529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 274..1067 | 19..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:54 Download gff for
BO13529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 274..1067 | 19..812 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:54 Download gff for
BO13529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22364671..22364957 | 19..305 | 100 | <- | Plus |
3R | 22365019..22365220 | 306..507 | 100 | <- | Plus |
3R | 22365276..22365469 | 508..701 | 100 | <- | Plus |
3R | 22365537..22365647 | 702..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:04 Download gff for
BO13529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18190393..18190679 | 19..305 | 100 | <- | Plus |
arm_3R | 18190741..18190942 | 306..507 | 100 | <- | Plus |
arm_3R | 18190998..18191191 | 508..701 | 100 | <- | Plus |
arm_3R | 18191259..18191369 | 702..812 | 100 | | Plus |
BO13529.5prime Sequence
858 bp (768 high quality bases) assembled on 2006-05-08
> BO13529.5prime
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAG
CGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGC
GCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCG
GCATTTTGGCCTTTTGTCTGTTCGTCTATCTTATGGCCTGGCTGGGTCGC
GGAAGATC
BO13529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-PB | 900 | CG5382-RB | 1..798 | 17..814 | 3990 | 100 | Plus |
CG5382-PB | 900 | CG5382-RB | 803..837 | 819..853 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 1165 | CG5382-RB | 171..1012 | 17..858 | 4150 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22364726..22364958 | 858..626 | 1090 | 97.9 | Minus |
3R | 32079331 | 3R | 22365019..22365225 | 626..420 | 1020 | 99.5 | Minus |
3R | 32079331 | 3R | 22365276..22365469 | 424..231 | 970 | 100 | Minus |
3R | 32079331 | 3R | 22365537..22365650 | 230..117 | 570 | 100 | Minus |
3R | 32079331 | 3R | 22365712..22365813 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:14:50 has no hits.
BO13529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:53 Download gff for
BO13529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-PB | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:33 Download gff for
BO13529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-PB | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:06 Download gff for
BO13529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 162..1012 | 5..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:20 Download gff for
BO13529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 162..1012 | 5..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:20 Download gff for
BO13529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22364726..22364957 | 627..858 | 98 | <- | Minus |
3R | 22365019..22365220 | 425..626 | 100 | <- | Minus |
3R | 22365276..22365469 | 231..424 | 100 | <- | Minus |
3R | 22365537..22365648 | 119..230 | 100 | <- | Minus |
3R | 22365712..22365821 | 5..118 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:06 Download gff for
BO13529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18190448..18190679 | 627..858 | 98 | <- | Minus |
arm_3R | 18190741..18190942 | 425..626 | 100 | <- | Minus |
arm_3R | 18190998..18191191 | 231..424 | 100 | <- | Minus |
arm_3R | 18191259..18191370 | 119..230 | 100 | <- | Minus |
arm_3R | 18191434..18191543 | 5..118 | 95 | | Minus |
BO13529.complete Sequence
931 bp assembled on 2006-10-11
GenBank Submission: FJ632814
> BO13529.complete
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAG
CGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGC
GCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCG
GCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGCTGGGTCGC
GGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAATCCACAGCC
GAACCACTACGAAGCAAGCTTTCTAGACCAT
BO13529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 900 | CG5382-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 1165 | CG5382-RB | 171..1067 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22364671..22364958 | 913..626 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 22365019..22365225 | 626..420 | 1020 | 99.5 | Minus |
3R | 32079331 | 3R | 22365276..22365469 | 424..231 | 970 | 100 | Minus |
3R | 32079331 | 3R | 22365537..22365650 | 230..117 | 570 | 100 | Minus |
3R | 32079331 | 3R | 22365712..22365813 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:22:33 has no hits.
BO13529.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:14 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:34 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 160..1065 | 5..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:20 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 171..1067 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:14 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 160..1065 | 5..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:11 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 171..1067 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:11 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22364669..22364957 | 627..915 | 99 | <- | Minus |
3R | 22365019..22365220 | 425..626 | 100 | <- | Minus |
3R | 22365276..22365469 | 231..424 | 100 | <- | Minus |
3R | 22365537..22365648 | 119..230 | 100 | <- | Minus |
3R | 22365712..22365813 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:20 Download gff for
BO13529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18190391..18190679 | 627..915 | 99 | <- | Minus |
arm_3R | 18190741..18190942 | 425..626 | 100 | <- | Minus |
arm_3R | 18190998..18191191 | 231..424 | 100 | <- | Minus |
arm_3R | 18191259..18191370 | 119..230 | 100 | <- | Minus |
arm_3R | 18191434..18191535 | 17..118 | 100 | | Minus |
BO13529.pep Sequence
Translation from 16 to 931
> BO13529.pep
MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI
SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC
SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP
KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA
GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP
PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYEA
SFLDH
BO13529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-PB | 299 | CG5382-PB | 1..299 | 1..299 | 1646 | 100 | Plus |