Clone BO13529 Report

Search the DGRC for BO13529

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG5382-RB
Protein status:BO13529.pep: validated full length
Sequenced Size:931

Clone Sequence Records

BO13529.3prime Sequence

812 bp (710 high quality bases) assembled on 2006-05-08

> BO13529.3prime
ATGGTCTAGAAAGCTTGCTTCGTAGTGGTTCGGCTGTGGATTGGGGTTAT
TCCAGCCCTCGTCCACGGCATCAGATCCTCCGCGACCCAGCCAGGCCATA
AGATAGACGAACAAGACAAAGGCCAAAATGCCGGCGGTCACCAGGAACCA
AGTGCGACGCCACGGCGGCCGCGAGGAGGGCGCATAGAAGCGGCGTGTCC
ATCGCGAGAACAATTCCGCAGGAGTGCGGCGCTGGTACTTATTATCGTCT
CGATCTGTCCCACCAATTGGCGACTGACGGGGCAGCAGCGGTCTTCTGCT
GCTGGCGTAGTCGCCCGCACTTGGGGGATTAAATGCATCCATTAGGAGCA
CGGAATGTGGGCTCACGGCGTCATGGCCATTGGGCTTCGTGCGCTCTCGC
TCGCCACCGGAATGGATGTGGTGCACTTTGGTCATGTTGCTGACAGCCGC
CTGGCTTGCCACCTTGGGCTTAATGGCCTTCAGACTGCTGCTCTGCTCCT
CAGAGAGCAGGGCGAGTCCCAGGCCATTTCTGCCCCAGTTAACCTGCGAC
AGGAAACTCTTCAGAGCATCGGCCACCGGGGAGACCAGGTTGGCGTTGGG
AAAGATCTCCACACTGCAGGCGGGGCACTGGTGACCCCGAGGGGCTGTGT
TGGCAGGCAGTGCGGCTTGGCGGGCGTTCAGGCAGTCCCAGTGGAAAACA
TGGTAGCAGACGAGGCGCACGCAATCGCCCTGCTCCAATGTGGTGCCGCA
CAGAGTGCAGTTGGAGATGTAGTCGCTGTCCCGCAGCCACTGCAGATACG
ACTGCACAATGC

BO13529.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 900 CG5382-RB 104..897 812..19 3970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1165 CG5382-RB 274..1067 812..19 3970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22364671..22364958 19..306 1440 100 Plus
3R 32079331 3R 22365019..22365225 306..512 1020 99.5 Plus
3R 32079331 3R 22365276..22365469 508..701 970 100 Plus
3R 32079331 3R 22365537..22365647 702..812 555 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:17:31 has no hits.

BO13529.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:52 Download gff for BO13529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-PB 104..900 18..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:32 Download gff for BO13529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-PB 104..900 18..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:04 Download gff for BO13529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 274..1067 19..812 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:54 Download gff for BO13529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 274..1067 19..812 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:54 Download gff for BO13529.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22364671..22364957 19..305 100 <- Plus
3R 22365019..22365220 306..507 100 <- Plus
3R 22365276..22365469 508..701 100 <- Plus
3R 22365537..22365647 702..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:04 Download gff for BO13529.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18190393..18190679 19..305 100 <- Plus
arm_3R 18190741..18190942 306..507 100 <- Plus
arm_3R 18190998..18191191 508..701 100 <- Plus
arm_3R 18191259..18191369 702..812 100   Plus

BO13529.5prime Sequence

858 bp (768 high quality bases) assembled on 2006-05-08

> BO13529.5prime
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAG
CGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGC
GCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCG
GCATTTTGGCCTTTTGTCTGTTCGTCTATCTTATGGCCTGGCTGGGTCGC
GGAAGATC

BO13529.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 900 CG5382-RB 1..798 17..814 3990 100 Plus
CG5382-PB 900 CG5382-RB 803..837 819..853 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1165 CG5382-RB 171..1012 17..858 4150 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22364726..22364958 858..626 1090 97.9 Minus
3R 32079331 3R 22365019..22365225 626..420 1020 99.5 Minus
3R 32079331 3R 22365276..22365469 424..231 970 100 Minus
3R 32079331 3R 22365537..22365650 230..117 570 100 Minus
3R 32079331 3R 22365712..22365813 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:14:50 has no hits.

BO13529.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:53 Download gff for BO13529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-PB 1..842 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:33 Download gff for BO13529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-PB 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:06 Download gff for BO13529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 162..1012 5..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:20 Download gff for BO13529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 162..1012 5..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:20 Download gff for BO13529.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22364726..22364957 627..858 98 <- Minus
3R 22365019..22365220 425..626 100 <- Minus
3R 22365276..22365469 231..424 100 <- Minus
3R 22365537..22365648 119..230 100 <- Minus
3R 22365712..22365821 5..118 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:06 Download gff for BO13529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18190448..18190679 627..858 98 <- Minus
arm_3R 18190741..18190942 425..626 100 <- Minus
arm_3R 18190998..18191191 231..424 100 <- Minus
arm_3R 18191259..18191370 119..230 100 <- Minus
arm_3R 18191434..18191543 5..118 95   Minus

BO13529.complete Sequence

931 bp assembled on 2006-10-11

GenBank Submission: FJ632814

> BO13529.complete
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAG
CGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGC
GCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCG
GCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGCTGGGTCGC
GGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAATCCACAGCC
GAACCACTACGAAGCAAGCTTTCTAGACCAT

BO13529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 900 CG5382-PB 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1165 CG5382-RB 171..1067 17..913 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22364671..22364958 913..626 1440 100 Minus
3R 32079331 3R 22365019..22365225 626..420 1020 99.5 Minus
3R 32079331 3R 22365276..22365469 424..231 970 100 Minus
3R 32079331 3R 22365537..22365650 230..117 570 100 Minus
3R 32079331 3R 22365712..22365813 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:22:33 has no hits.

BO13529.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:14 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..900 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:34 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 160..1065 5..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:20 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 171..1067 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:14 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 160..1065 5..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:11 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 171..1067 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:11 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22364669..22364957 627..915 99 <- Minus
3R 22365019..22365220 425..626 100 <- Minus
3R 22365276..22365469 231..424 100 <- Minus
3R 22365537..22365648 119..230 100 <- Minus
3R 22365712..22365813 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:20 Download gff for BO13529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18190391..18190679 627..915 99 <- Minus
arm_3R 18190741..18190942 425..626 100 <- Minus
arm_3R 18190998..18191191 231..424 100 <- Minus
arm_3R 18191259..18191370 119..230 100 <- Minus
arm_3R 18191434..18191535 17..118 100   Minus

BO13529.pep Sequence

Translation from 16 to 931

> BO13529.pep
MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI
SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC
SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP
KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA
GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP
PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYEA
SFLDH

BO13529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 299 CG5382-PB 1..299 1..299 1646 100 Plus