Clone Sequence Records
BO13530.3prime Sequence
920 bp (816 high quality bases) assembled on 2006-05-08
> BO13530.3prime
ATGGTCTAGAAAGCTTGCGCCCTTCAGGCCGGAACAGCCGCGGACGCCCA
GGCCCACGCCCATGCCGCCCAATCCAGCGTTGCTCTCCTCAATGTAGACA
TTGCCGGGCTGCAGGGTCTTCAGGATTCGTCGCTCCTGATGCTTGCCGCG
TTTCTCAGGCAGCAGCACGTGTTGTGGCTGGAAGATTCCCGACTGCGTCG
TTGCTGGATGCGTCGTCGCTGCGGAGGCGGGCAGTCCTCGCAAGGCGTCC
GCGTTGCCGATGAAGAAGGTGCCTCCGTCCAGGCTCTGCACCTCCGCCAG
CTTGGCCATCAGCTTGGTTGACAGCTCCTCCACATCCTGGTCCAGGCGAC
GCTCCATACGTCGCCACTGGCGCATGTGGTGGATGAGGATGCAGGCGGCC
ACCGAGAAGAAGACCAGGCATGTGAGCACGGCCACGTAAAGAACGCCAGT
CTGCCAGTCAAGGACCCAGGCGGCGGCCGCCTCCTCGTGCAGCTGCTGCA
GTTGCTCGTGGGTCAGGTGCTGCAGTGGGGCATTGTGCTCGAAGTGCTCA
TACTCGGAGGACTTTCGGCGCTCCTTCCAGTTGGGTTCGGTCTTGGCCAA
GACAACCCAGTCGATCTTGAGGTCGTATATGGAACCGCAGATGGTGTCCG
TGTGTAGCTGGCAGGGTCGCAGCGGTATCATCTCGCCCTGGCAGCGGGTG
CACGGTGTGCAGCGATCTCGCTGCGAGTCCCACCAATGCTGTGGGGCGCA
GGGCGAGCTGGAGGCGATGGACACCTGGCTGACCGGCGGTGGATCTGGTG
GCGCTATGTCTGTGTTTGCAGCGGAGGATGAAGAGGAGGCGCTGGTGGCC
ACCAGGGAGCAGGTGGTGGACAGCAGTAGCAAAGCCAGGTAACTGCCGTG
GCTGATGCTGATGTGGCTGC
BO13530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6531-PA | 1032 | wgn-RA | 128..1029 | 920..19 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 2415 | CG6531-RA | 628..1529 | 920..19 | 4495 | 99.9 | Minus |
wgn-RB | 2594 | CG6531-RB | 628..1213 | 920..335 | 2915 | 99.8 | Minus |
wgn-RB | 2594 | CG6531-RB | 1391..1708 | 336..19 | 1590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18628775..18629124 | 571..920 | 1735 | 99.7 | Plus |
X | 23542271 | X | 18628474..18628710 | 336..572 | 1185 | 100 | Plus |
X | 23542271 | X | 18625638..18625818 | 156..336 | 905 | 100 | Plus |
X | 23542271 | X | 18624928..18625065 | 19..156 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:38:20 has no hits.
BO13530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:54 Download gff for
BO13530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-PA | 128..1032 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:35 Download gff for
BO13530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6531-PA | 128..1032 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:53 Download gff for
BO13530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 628..1534 | 13..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:39 Download gff for
BO13530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 628..1534 | 13..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:39 Download gff for
BO13530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18624923..18625064 | 13..155 | 97 | <- | Plus |
X | 18625638..18625817 | 156..335 | 100 | <- | Plus |
X | 18628474..18628708 | 336..570 | 100 | <- | Plus |
X | 18628775..18629124 | 571..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:53 Download gff for
BO13530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18518956..18519097 | 13..155 | 97 | <- | Plus |
arm_X | 18519671..18519850 | 156..335 | 100 | <- | Plus |
arm_X | 18522507..18522741 | 336..570 | 100 | <- | Plus |
arm_X | 18522808..18523157 | 571..920 | 99 | | Plus |
BO13530.5prime Sequence
925 bp (786 high quality bases) assembled on 2006-05-08
> BO13530.5prime
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGATGTGGAGGAGCTGTCAACCAA
GCTGATGGCCAAGCTGGCGGAGGTGCAGAGCCTGGACGGAGGCACCTTCT
TCATCGGCAACGCGGACGCCTTGCGAGGACTGCCCGCCTCCGCAGCGACG
ACGCATCCAGCAACGACGCAGTCGGGAATCTTCCAGCCACAACACGTGCT
GCTGCCTGAGAAACGCGGCAAGCAT
BO13530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6531-PA | 1032 | wgn-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 2415 | CG6531-RA | 501..1409 | 17..925 | 4545 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 501..1213 | 17..729 | 3565 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 1391..1588 | 728..925 | 990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18628775..18629251 | 493..17 | 2385 | 100 | Minus |
X | 23542271 | X | 18628474..18628710 | 728..492 | 1185 | 100 | Minus |
X | 23542271 | X | 18625638..18625818 | 908..728 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:43:57 has no hits.
BO13530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:55 Download gff for
BO13530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:37 Download gff for
BO13530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6531-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:03 Download gff for
BO13530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1409 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:58 Download gff for
BO13530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1409 | 17..925 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:58 Download gff for
BO13530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18625638..18625817 | 729..908 | 100 | <- | Minus |
X | 18628474..18628708 | 494..728 | 100 | <- | Minus |
X | 18625048..18625064 | 909..925 | 100 | <- | Minus |
X | 18628775..18629251 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:03 Download gff for
BO13530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18519081..18519097 | 909..925 | 100 | <- | Minus |
arm_X | 18519671..18519850 | 729..908 | 100 | <- | Minus |
arm_X | 18522507..18522741 | 494..728 | 100 | <- | Minus |
arm_X | 18522808..18523284 | 17..493 | 100 | | Minus |
BO13530.complete Sequence
1063 bp assembled on 2006-10-11
GenBank Submission: FJ632815
> BO13530.complete
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGATGTGGAGGAGCTGTCAACCAA
GCTGATGGCCAAGCTGGCGGAGGTGCAGAGCCTGGACGGAGGCACCTTCT
TCATCGGCAACGCGGACGCCTTGCGAGGACTGCCCGCCTCCGCAGCGACG
ACGCATCCAGCAACGACGCAGTCGGGAATCTTCCAGCCACAACACGTGCT
GCTGCCTGAGAAACGCGGCAAGCATCAGGAGCGACGAATCCTGAAGACCC
TGCAGCCCGGCAATGTCTACATTGAGGAGAGCAACGCTGGATTGGGCGGC
ATGGGCGTGGGCCTGGGCGTCCGCGGCTGTTCCGGCCTGAAGGGCGCAAG
CTTTCTAGACCAT
BO13530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 1032 | CG6531-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
wgn-RB | 804 | CG6531-PB | 1..713 | 17..729 | 3565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 2415 | CG6531-RA | 501..1529 | 17..1045 | 5145 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 501..1213 | 17..729 | 3565 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 1391..1708 | 728..1045 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18628775..18629251 | 493..17 | 2385 | 100 | Minus |
X | 23542271 | X | 18628474..18628710 | 728..492 | 1185 | 100 | Minus |
X | 23542271 | X | 18625638..18625818 | 908..728 | 905 | 100 | Minus |
X | 23542271 | X | 18624928..18625065 | 1045..908 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:05:54 has no hits.
BO13530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:45 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 1..1032 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:01 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 496..1529 | 17..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:08 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1529 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:46 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 496..1529 | 17..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:56 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1529 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:56 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18624925..18625064 | 909..1047 | 98 | <- | Minus |
X | 18625638..18625817 | 729..908 | 100 | <- | Minus |
X | 18628474..18628708 | 494..728 | 100 | <- | Minus |
X | 18628775..18629251 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:08 Download gff for
BO13530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18518958..18519097 | 909..1047 | 98 | <- | Minus |
arm_X | 18519671..18519850 | 729..908 | 100 | <- | Minus |
arm_X | 18522507..18522741 | 494..728 | 100 | <- | Minus |
arm_X | 18522808..18523284 | 17..493 | 100 | | Minus |
BO13530.pep Sequence
Translation from 16 to 1063
> BO13530.pep
MMPPRLPGGHGGAMRSRSSSSGHHLNTTFHKRRRRRQQHHIGGSHISISH
GSYLALLLLSTTCSLVATSASSSSSAANTDIAPPDPPPVSQVSIASSSPC
APQHWWDSQRDRCTPCTRCQGEMIPLRPCQLHTDTICGSIYDLKIDWVVL
AKTEPNWKERRKSSEYEHFEHNAPLQHLTHEQLQQLHEEAAAAWVLDWQT
GVLYVAVLTCLVFFSVAACILIHHMRQWRRMERRLDQDVEELSTKLMAKL
AEVQSLDGGTFFIGNADALRGLPASAATTHPATTQSGIFQPQHVLLPEKR
GKHQERRILKTLQPGNVYIEESNAGLGGMGVGLGVRGCSGLKGASFLDH
BO13530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-PA | 343 | CG6531-PA | 1..343 | 1..343 | 1833 | 100 | Plus |
wgn-PB | 267 | CG6531-PB | 1..238 | 1..238 | 1297 | 100 | Plus |