Clone BO13530 Report

Search the DGRC for BO13530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptwgn-RA
Protein status:BO13530.pep: validated full length
Sequenced Size:1063

Clone Sequence Records

BO13530.3prime Sequence

920 bp (816 high quality bases) assembled on 2006-05-08

> BO13530.3prime
ATGGTCTAGAAAGCTTGCGCCCTTCAGGCCGGAACAGCCGCGGACGCCCA
GGCCCACGCCCATGCCGCCCAATCCAGCGTTGCTCTCCTCAATGTAGACA
TTGCCGGGCTGCAGGGTCTTCAGGATTCGTCGCTCCTGATGCTTGCCGCG
TTTCTCAGGCAGCAGCACGTGTTGTGGCTGGAAGATTCCCGACTGCGTCG
TTGCTGGATGCGTCGTCGCTGCGGAGGCGGGCAGTCCTCGCAAGGCGTCC
GCGTTGCCGATGAAGAAGGTGCCTCCGTCCAGGCTCTGCACCTCCGCCAG
CTTGGCCATCAGCTTGGTTGACAGCTCCTCCACATCCTGGTCCAGGCGAC
GCTCCATACGTCGCCACTGGCGCATGTGGTGGATGAGGATGCAGGCGGCC
ACCGAGAAGAAGACCAGGCATGTGAGCACGGCCACGTAAAGAACGCCAGT
CTGCCAGTCAAGGACCCAGGCGGCGGCCGCCTCCTCGTGCAGCTGCTGCA
GTTGCTCGTGGGTCAGGTGCTGCAGTGGGGCATTGTGCTCGAAGTGCTCA
TACTCGGAGGACTTTCGGCGCTCCTTCCAGTTGGGTTCGGTCTTGGCCAA
GACAACCCAGTCGATCTTGAGGTCGTATATGGAACCGCAGATGGTGTCCG
TGTGTAGCTGGCAGGGTCGCAGCGGTATCATCTCGCCCTGGCAGCGGGTG
CACGGTGTGCAGCGATCTCGCTGCGAGTCCCACCAATGCTGTGGGGCGCA
GGGCGAGCTGGAGGCGATGGACACCTGGCTGACCGGCGGTGGATCTGGTG
GCGCTATGTCTGTGTTTGCAGCGGAGGATGAAGAGGAGGCGCTGGTGGCC
ACCAGGGAGCAGGTGGTGGACAGCAGTAGCAAAGCCAGGTAACTGCCGTG
GCTGATGCTGATGTGGCTGC

BO13530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6531-PA 1032 wgn-RA 128..1029 920..19 4485 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2415 CG6531-RA 628..1529 920..19 4495 99.9 Minus
wgn-RB 2594 CG6531-RB 628..1213 920..335 2915 99.8 Minus
wgn-RB 2594 CG6531-RB 1391..1708 336..19 1590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18628775..18629124 571..920 1735 99.7 Plus
X 23542271 X 18628474..18628710 336..572 1185 100 Plus
X 23542271 X 18625638..18625818 156..336 905 100 Plus
X 23542271 X 18624928..18625065 19..156 690 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:38:20 has no hits.

BO13530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:54 Download gff for BO13530.3prime
Subject Subject Range Query Range Percent Splice Strand
wgn-PA 128..1032 16..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:35 Download gff for BO13530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6531-PA 128..1032 16..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:53 Download gff for BO13530.3prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 628..1534 13..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:39 Download gff for BO13530.3prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 628..1534 13..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:39 Download gff for BO13530.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18624923..18625064 13..155 97 <- Plus
X 18625638..18625817 156..335 100 <- Plus
X 18628474..18628708 336..570 100 <- Plus
X 18628775..18629124 571..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:53 Download gff for BO13530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18518956..18519097 13..155 97 <- Plus
arm_X 18519671..18519850 156..335 100 <- Plus
arm_X 18522507..18522741 336..570 100 <- Plus
arm_X 18522808..18523157 571..920 99   Plus

BO13530.5prime Sequence

925 bp (786 high quality bases) assembled on 2006-05-08

> BO13530.5prime
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGATGTGGAGGAGCTGTCAACCAA
GCTGATGGCCAAGCTGGCGGAGGTGCAGAGCCTGGACGGAGGCACCTTCT
TCATCGGCAACGCGGACGCCTTGCGAGGACTGCCCGCCTCCGCAGCGACG
ACGCATCCAGCAACGACGCAGTCGGGAATCTTCCAGCCACAACACGTGCT
GCTGCCTGAGAAACGCGGCAAGCAT

BO13530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6531-PA 1032 wgn-RA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2415 CG6531-RA 501..1409 17..925 4545 100 Plus
wgn-RB 2594 CG6531-RB 501..1213 17..729 3565 100 Plus
wgn-RB 2594 CG6531-RB 1391..1588 728..925 990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18628775..18629251 493..17 2385 100 Minus
X 23542271 X 18628474..18628710 728..492 1185 100 Minus
X 23542271 X 18625638..18625818 908..728 905 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:43:57 has no hits.

BO13530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:55 Download gff for BO13530.5prime
Subject Subject Range Query Range Percent Splice Strand
wgn-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:37 Download gff for BO13530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6531-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:03 Download gff for BO13530.5prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1409 17..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:58 Download gff for BO13530.5prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1409 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:58 Download gff for BO13530.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18625638..18625817 729..908 100 <- Minus
X 18628474..18628708 494..728 100 <- Minus
X 18625048..18625064 909..925 100 <- Minus
X 18628775..18629251 17..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:03 Download gff for BO13530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18519081..18519097 909..925 100 <- Minus
arm_X 18519671..18519850 729..908 100 <- Minus
arm_X 18522507..18522741 494..728 100 <- Minus
arm_X 18522808..18523284 17..493 100   Minus

BO13530.complete Sequence

1063 bp assembled on 2006-10-11

GenBank Submission: FJ632815

> BO13530.complete
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGATGTGGAGGAGCTGTCAACCAA
GCTGATGGCCAAGCTGGCGGAGGTGCAGAGCCTGGACGGAGGCACCTTCT
TCATCGGCAACGCGGACGCCTTGCGAGGACTGCCCGCCTCCGCAGCGACG
ACGCATCCAGCAACGACGCAGTCGGGAATCTTCCAGCCACAACACGTGCT
GCTGCCTGAGAAACGCGGCAAGCATCAGGAGCGACGAATCCTGAAGACCC
TGCAGCCCGGCAATGTCTACATTGAGGAGAGCAACGCTGGATTGGGCGGC
ATGGGCGTGGGCCTGGGCGTCCGCGGCTGTTCCGGCCTGAAGGGCGCAAG
CTTTCTAGACCAT

BO13530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 1032 CG6531-PA 1..1029 17..1045 5145 100 Plus
wgn-RB 804 CG6531-PB 1..713 17..729 3565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2415 CG6531-RA 501..1529 17..1045 5145 100 Plus
wgn-RB 2594 CG6531-RB 501..1213 17..729 3565 100 Plus
wgn-RB 2594 CG6531-RB 1391..1708 728..1045 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18628775..18629251 493..17 2385 100 Minus
X 23542271 X 18628474..18628710 728..492 1185 100 Minus
X 23542271 X 18625638..18625818 908..728 905 100 Minus
X 23542271 X 18624928..18625065 1045..908 690 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:05:54 has no hits.

BO13530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:45 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 17..1048 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:01 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 496..1529 17..1051 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:08 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1529 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:46 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 496..1529 17..1051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:56 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1529 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:56 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
X 18624925..18625064 909..1047 98 <- Minus
X 18625638..18625817 729..908 100 <- Minus
X 18628474..18628708 494..728 100 <- Minus
X 18628775..18629251 17..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:08 Download gff for BO13530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18518958..18519097 909..1047 98 <- Minus
arm_X 18519671..18519850 729..908 100 <- Minus
arm_X 18522507..18522741 494..728 100 <- Minus
arm_X 18522808..18523284 17..493 100   Minus

BO13530.pep Sequence

Translation from 16 to 1063

> BO13530.pep
MMPPRLPGGHGGAMRSRSSSSGHHLNTTFHKRRRRRQQHHIGGSHISISH
GSYLALLLLSTTCSLVATSASSSSSAANTDIAPPDPPPVSQVSIASSSPC
APQHWWDSQRDRCTPCTRCQGEMIPLRPCQLHTDTICGSIYDLKIDWVVL
AKTEPNWKERRKSSEYEHFEHNAPLQHLTHEQLQQLHEEAAAAWVLDWQT
GVLYVAVLTCLVFFSVAACILIHHMRQWRRMERRLDQDVEELSTKLMAKL
AEVQSLDGGTFFIGNADALRGLPASAATTHPATTQSGIFQPQHVLLPEKR
GKHQERRILKTLQPGNVYIEESNAGLGGMGVGLGVRGCSGLKGASFLDH

BO13530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-PA 343 CG6531-PA 1..343 1..343 1833 100 Plus
wgn-PB 267 CG6531-PB 1..238 1..238 1297 100 Plus