Clone Sequence Records
BO13531.5prime Sequence
314 bp (313 high quality bases) assembled on 2006-05-08
> BO13531.5prime
GAAGTTATCAGTCGACATGAACAACCATAAAGAAATGCAAAGTCAGCCAA
AGCAGCATCAATCCCGGCTGGGTGGCCACCGAGATCGTTCCGGACGAAAC
GAAGGCCAAGCTGGGCGAGGTAATCCTCCAGGCGGACGACGTCGCTCAGG
CTGTACTGTACGCCCTATCCACGCCACCGCACACTCAGGTGGAGCAGATA
ACGCTGAGGGCGGTGGGCGAATATTTCTGATAGCCCGACAACACAACGCA
GCCCCCGAGATTAGGCAATCGACTTGCAGTGGAACAGTAAAAATCAAAGC
AAGCTTTCTAGACC
BO13531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-PA | 285 | CG10962-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
CG10962-PB | 750 | CG10962-RB | 574..750 | 54..230 | 885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-RB | 1074 | CG10962-RB | 602..846 | 54..298 | 1225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8973136..8973380 | 298..54 | 1225 | 100 | Minus |
X | 23542271 | X | 8979454..8979492 | 53..15 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:57:04 has no hits.
BO13531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:56 Download gff for
BO13531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-PA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:39 Download gff for
BO13531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-PA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:10 Download gff for
BO13531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..851 | 47..303 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:29 Download gff for
BO13531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..851 | 47..303 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:29 Download gff for
BO13531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8973131..8973380 | 54..303 | 99 | <- | Minus |
X | 8979454..8979492 | 15..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:10 Download gff for
BO13531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8867164..8867413 | 54..303 | 99 | <- | Minus |
arm_X | 8873487..8873525 | 15..53 | 100 | | Minus |
BO13531.3prime Sequence
314 bp (313 high quality bases) assembled on 2006-05-08
> BO13531.3prime
ATGGTCTAGAAAGCTTGCTTTGATTTTTACTGTTCCACTGCAAGTCGATT
GCCTAATCTCGGGGGCTGCGTTGTGTTGTCGGGCTATCAGAAATATTCGC
CCACCGCCCTCAGCGTTATCTGCTCCACCTGAGTGTGCGGTGGCGTGGAT
AGGGCGTACAGTACAGCCTGAGCGACGTCGTCCGCCTGGAGGATTACCTC
GCCCAGCTTGGCCTTCGTTTCGTCCGGAACGATCTCGGTGGCCACCCAGC
CGGGATTGATGCTGCTTTGGCTGACTTTGCATTTCTTTATGGTTGTTCAT
GTCGACTGATAACT
BO13531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-PA | 285 | CG10962-RA | 1..282 | 300..19 | 1410 | 100 | Minus |
CG10962-PB | 750 | CG10962-RB | 574..750 | 263..87 | 885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-RB | 1074 | CG10962-RB | 602..846 | 263..19 | 1225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8973136..8973380 | 19..263 | 1225 | 100 | Plus |
X | 23542271 | X | 8979454..8979492 | 264..302 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:23:32 has no hits.
BO13531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:55 Download gff for
BO13531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-PA | 1..285 | 15..300 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:38 Download gff for
BO13531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-PA | 1..285 | 15..300 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:06 Download gff for
BO13531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..851 | 14..270 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:02 Download gff for
BO13531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..851 | 14..270 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:02 Download gff for
BO13531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8973131..8973380 | 14..263 | 99 | <- | Plus |
X | 8979454..8979492 | 264..302 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:06 Download gff for
BO13531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8867164..8867413 | 14..263 | 99 | <- | Plus |
arm_X | 8873487..8873525 | 264..302 | 100 | | Plus |
BO13531.complete Sequence
316 bp assembled on 2006-10-11
GenBank Submission: FJ632816
> BO13531.complete
GAAGTTATCAGTCGACATGAACAACCATAAAGAAATGCAAAGTCAGCCAA
AGCAGCATCAATCCCGGCTGGGTGGCCACCGAGATCGTTCCGGACGAAAC
GAAGGCCAAGCTGGGCGAGGTAATCCTCCAGGCGGACGACGTCGCTCAGG
CTGTACTGTACGCCCTATCCACGCCACCGCACACTCAGGTGGAGCAGATA
ACGCTGAGGGCGGTGGGCGAATATTTCTGATAGCCCGACAACACAACGCA
GCCCCCGAGATTAGGCAATCGACTTGCAGTGGAACAGTAAAAATCAAAGC
AAGCTTTCTAGACCAT
BO13531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-RB | 750 | CG10962-PB | 574..750 | 54..230 | 885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-RB | 1074 | CG10962-RB | 602..846 | 54..298 | 1225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8973136..8973380 | 298..54 | 1225 | 100 | Minus |
X | 23542271 | X | 8979454..8979492 | 53..15 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:11:04 has no hits.
BO13531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:19 Download gff for
BO13531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:10 Download gff for
BO13531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 854..1142 | 15..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:41 Download gff for
BO13531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..836 | 47..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:49 Download gff for
BO13531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..836 | 47..288 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:49 Download gff for
BO13531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8973146..8973380 | 54..288 | 100 | <- | Minus |
X | 8979454..8979490 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:41 Download gff for
BO13531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8867179..8867413 | 54..288 | 100 | <- | Minus |
arm_X | 8873487..8873523 | 17..53 | 100 | | Minus |
BO13531.pep Sequence
Translation from 16 to 316
> BO13531.pep
MNNHKEMQSQPKQHQSRLGGHRDRSGRNEGQAGRGNPPGGRRRSGCTVRP
IHATAHSGGADNAEGGGRIFLIARQHNAAPEIRQSTCSGTVKIKASFLDH
Sequence BO13531.pep has no blast hits.