Clone BO13531 Report

Search the DGRC for BO13531

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG10962-RA
Protein status:BO13531.pep: validated full length
Sequenced Size:316

Clone Sequence Records

BO13531.5prime Sequence

314 bp (313 high quality bases) assembled on 2006-05-08

> BO13531.5prime
GAAGTTATCAGTCGACATGAACAACCATAAAGAAATGCAAAGTCAGCCAA
AGCAGCATCAATCCCGGCTGGGTGGCCACCGAGATCGTTCCGGACGAAAC
GAAGGCCAAGCTGGGCGAGGTAATCCTCCAGGCGGACGACGTCGCTCAGG
CTGTACTGTACGCCCTATCCACGCCACCGCACACTCAGGTGGAGCAGATA
ACGCTGAGGGCGGTGGGCGAATATTTCTGATAGCCCGACAACACAACGCA
GCCCCCGAGATTAGGCAATCGACTTGCAGTGGAACAGTAAAAATCAAAGC
AAGCTTTCTAGACC

BO13531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-PA 285 CG10962-RA 1..282 17..298 1410 100 Plus
CG10962-PB 750 CG10962-RB 574..750 54..230 885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-RB 1074 CG10962-RB 602..846 54..298 1225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8973136..8973380 298..54 1225 100 Minus
X 23542271 X 8979454..8979492 53..15 195 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:57:04 has no hits.

BO13531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:56 Download gff for BO13531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-PA 1..285 17..302 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:39 Download gff for BO13531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-PA 1..285 17..302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:10 Download gff for BO13531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..851 47..303 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:29 Download gff for BO13531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..851 47..303 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:29 Download gff for BO13531.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8973131..8973380 54..303 99 <- Minus
X 8979454..8979492 15..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:10 Download gff for BO13531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8867164..8867413 54..303 99 <- Minus
arm_X 8873487..8873525 15..53 100   Minus

BO13531.3prime Sequence

314 bp (313 high quality bases) assembled on 2006-05-08

> BO13531.3prime
ATGGTCTAGAAAGCTTGCTTTGATTTTTACTGTTCCACTGCAAGTCGATT
GCCTAATCTCGGGGGCTGCGTTGTGTTGTCGGGCTATCAGAAATATTCGC
CCACCGCCCTCAGCGTTATCTGCTCCACCTGAGTGTGCGGTGGCGTGGAT
AGGGCGTACAGTACAGCCTGAGCGACGTCGTCCGCCTGGAGGATTACCTC
GCCCAGCTTGGCCTTCGTTTCGTCCGGAACGATCTCGGTGGCCACCCAGC
CGGGATTGATGCTGCTTTGGCTGACTTTGCATTTCTTTATGGTTGTTCAT
GTCGACTGATAACT

BO13531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-PA 285 CG10962-RA 1..282 300..19 1410 100 Minus
CG10962-PB 750 CG10962-RB 574..750 263..87 885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-RB 1074 CG10962-RB 602..846 263..19 1225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8973136..8973380 19..263 1225 100 Plus
X 23542271 X 8979454..8979492 264..302 195 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:23:32 has no hits.

BO13531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:55 Download gff for BO13531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-PA 1..285 15..300 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:38 Download gff for BO13531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-PA 1..285 15..300 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:06 Download gff for BO13531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..851 14..270 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:02 Download gff for BO13531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..851 14..270 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:02 Download gff for BO13531.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8973131..8973380 14..263 99 <- Plus
X 8979454..8979492 264..302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:06 Download gff for BO13531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8867164..8867413 14..263 99 <- Plus
arm_X 8873487..8873525 264..302 100   Plus

BO13531.complete Sequence

316 bp assembled on 2006-10-11

GenBank Submission: FJ632816

> BO13531.complete
GAAGTTATCAGTCGACATGAACAACCATAAAGAAATGCAAAGTCAGCCAA
AGCAGCATCAATCCCGGCTGGGTGGCCACCGAGATCGTTCCGGACGAAAC
GAAGGCCAAGCTGGGCGAGGTAATCCTCCAGGCGGACGACGTCGCTCAGG
CTGTACTGTACGCCCTATCCACGCCACCGCACACTCAGGTGGAGCAGATA
ACGCTGAGGGCGGTGGGCGAATATTTCTGATAGCCCGACAACACAACGCA
GCCCCCGAGATTAGGCAATCGACTTGCAGTGGAACAGTAAAAATCAAAGC
AAGCTTTCTAGACCAT

BO13531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-RB 750 CG10962-PB 574..750 54..230 885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-RB 1074 CG10962-RB 602..846 54..298 1225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8973136..8973380 298..54 1225 100 Minus
X 23542271 X 8979454..8979492 53..15 195 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:11:04 has no hits.

BO13531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:19 Download gff for BO13531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..285 17..302 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:10 Download gff for BO13531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 854..1142 15..303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:41 Download gff for BO13531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..836 47..288 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:49 Download gff for BO13531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..836 47..288 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:49 Download gff for BO13531.complete
Subject Subject Range Query Range Percent Splice Strand
X 8973146..8973380 54..288 100 <- Minus
X 8979454..8979490 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:41 Download gff for BO13531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8867179..8867413 54..288 100 <- Minus
arm_X 8873487..8873523 17..53 100   Minus

BO13531.pep Sequence

Translation from 16 to 316

> BO13531.pep
MNNHKEMQSQPKQHQSRLGGHRDRSGRNEGQAGRGNPPGGRRRSGCTVRP
IHATAHSGGADNAEGGGRIFLIARQHNAAPEIRQSTCSGTVKIKASFLDH
Sequence BO13531.pep has no blast hits.