Clone Sequence Records
BO13533.3prime Sequence
864 bp (831 high quality bases) assembled on 2006-05-08
> BO13533.3prime
ATGGTCTAGAAAGCTTGCATCACTAATCACTACCAGGTCATCCTCCTCCT
CATCTTCTGCGTTATCCTCTTGATCCTGGGGCACCAAGCTGGAGTTCATC
AACTCTTCAAAGACATCCGCATTATCGGAACTTTGATTGAAGAAGTAACT
TATGTTATCCAAGGGCTTCACTGGCGTTGGAATCTTTTCGCTGATGCGAT
GCTGCATCTTGAATCGCTCCACTGGCGTCCTGGCCAGCTTCTGCAGATCT
CCCTTGACCAGCAGATCAAAACTGTCCTCCAAGGAGAATCGCTTACTCTG
CGGTAGTTGATCCACTTGAGAGAGATCTCTTTTCGTTTCCACTTTGGGCG
ATTCATTCACATTTCCTAGACTCATCTGCGCCAGACGTAAGCTCAAATCT
TCCGCCATGGGTTCGTAATGAAGCTGGTGACCATCGTGGTTGGTCAGTGC
TGGCTTGGCATTCGGATTCGAGATAATGCCTTTAACTATGTCCGACATAT
CGAACTCTTCGGCATCGCAATCGCTTTCCAGATCGGAGGGCAGGAACTTG
GTGATGGGGGTGGAGCATTGCTGACGTTGCGGAGCGGGAGCCTTGACCGG
AGTACCTTCCTTCTTGCGCCCTAGGAATTGGTGCAGTAATGGCTGGTTCT
CTTCAGGCTGAGCCTTTATCTTTCTGACCACTCGCTTTGGTTTCGAATTC
GGCTCGTTTTCCTTATTCTCCTCTTCAGATGCGGTTTTCTTCTTTCGCGT
GGTTTTCTTGGCGGGCTTCTCCTTCGACTTCAAAAAGGCCGCTACTAAAT
CGGGATACGCTGTCTCCAGCATGTCCAATGGCTCAATGGTGTAGTAAAGT
TCCTCGATTCCCTT
BO13533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10670-PA | 2181 | Gen-RA | 1333..2178 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 1408..2253 | 864..19 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5149869..5150714 | 19..864 | 4230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:10:51 has no hits.
BO13533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:59 Download gff for
BO13533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-PA | 1333..2181 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:44 Download gff for
BO13533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10670-PA | 1333..2181 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:21 Download gff for
BO13533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 1408..2265 | 5..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:44 Download gff for
BO13533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 1408..2265 | 5..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:44 Download gff for
BO13533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5149857..5150714 | 5..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:21 Download gff for
BO13533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5142957..5143814 | 5..864 | 99 | | Plus |
BO13533.5prime Sequence
875 bp (807 high quality bases) assembled on 2006-05-08
> BO13533.5prime
GAAGTTATCAGTCGACATGGGCGTCAAGGAATTATGGGGTGTTTTAACGC
CCCATTGTGAACGTAAACCCATTAATGAACTGCGGGGAAAGAAAGTGGCC
ATCGACCTGGCCGGCTGGGTGTGCGAATCTCTTAATGTTGTGGACTACTT
TGTGCATCCAAGGCATCATTTAAAGAACCTCTTCTTTCGCACTTGCTACT
TGATTTGGGAGCAAGTTACTCCGGTTTTCGTTTTGGAGGGAGTTGCTCCA
AAACTCAAGAGCCAGGTGATAGCCAAAAGGAATGAGCTCCAGTTTCGGGG
AGTGAAGCCCAAGAATTCGCCTGAGTGCACCCAAAGTCAGCCGTCCAAGG
GCGACAAGGGACGCAGCCGGTTCAACCATGTTCTCAAGCAGTGCGAAACG
CTGCTGCTCTCCATGGGAATCCAGTGCGTCCAAGGTCCCGGCGAGGCGGA
GGCCTACTGTGCCTTTCTCAACAAGCATGGCCTAGTGGACGGCGTCATTA
GCCAGGACTCGGATTGCTTTGCCTATGGAGCCGTTCGTGTCTATCGCAAC
TTCTCCGTTTCCACCCAAGGAGCCCAGGCAGCCGCCGGCGGAGCTGTGGA
CATCTACGACATGCGGGAGATCACATCCCGAATGGACTTTGGCCAACAGA
AGATCATTGTGATGGCTTTGCTCTGCGGCTGTGATTATTGTCCTGATGGC
ATAGGTGGCATTGGCAAGGATGGCGTCCTAAAGCTGTTCAACAAGTACAA
GGAGACTGAGATTTTGGATAGAATGAGAAGCTGGCGTGGTGAAACCGATA
AATACAATGCCTTGGAGATCCGAGTGGACGACAAATCCATCTGCAGCAAT
TGTGGCCACATTGGCAAGACCCAGA
BO13533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10670-PA | 2181 | Gen-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 76..934 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5151770..5152076 | 481..175 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 5151415..5151704 | 771..482 | 1450 | 100 | Minus |
| 3L | 28110227 | 3L | 5152143..5152301 | 175..17 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 5151243..5151348 | 875..770 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:49:47 has no hits.
BO13533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:00 Download gff for
BO13533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:45 Download gff for
BO13533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10670-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:27 Download gff for
BO13533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..933 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:42 Download gff for
BO13533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..933 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:42 Download gff for
BO13533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5151244..5151346 | 772..874 | 100 | <- | Minus |
| 3L | 5151415..5151704 | 482..771 | 100 | <- | Minus |
| 3L | 5151770..5152076 | 175..481 | 100 | <- | Minus |
| 3L | 5152144..5152301 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:27 Download gff for
BO13533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5144344..5144446 | 772..874 | 100 | <- | Minus |
| arm_3L | 5144515..5144804 | 482..771 | 100 | <- | Minus |
| arm_3L | 5144870..5145176 | 175..481 | 100 | <- | Minus |
| arm_3L | 5145244..5145401 | 17..174 | 100 | | Minus |
BO13533.complete Sequence
2212 bp assembled on 2008-08-14
GenBank Submission: FJ632817
> BO13533.complete
GAAGTTATCAGTCGACATGGGCGTCAAGGAATTATGGGGTGTTTTAACGC
CCCATTGTGAACGTAAACCCATTAATGAACTGCGGGGAAAGAAAGTGGCC
ATCGACCTGGCCGGCTGGGTGTGCGAATCTCTTAATGTTGTGGACTACTT
TGTGCATCCAAGGCATCATTTAAAGAACCTCTTCTTTCGCACTTGCTACT
TGATTTGGGAGCAAGTTACTCCGGTTTTCGTTTTGGAGGGAGTTGCTCCA
AAACTCAAGAGCCAGGTGATAGCCAAAAGGAATGAGCTCCAGTTTCGGGG
AGTGAAGCCCAAGAATTCGCCTGAGTGCACCCAAAGTCAGCCGTCCAAGG
GCGACAAGGGACGCAGCCGGTTCAACCATGTTCTCAAGCAGTGCGAAACG
CTGCTGCTCTCCATGGGAATCCAGTGCGTCCAAGGTCCCGGCGAGGCGGA
GGCCTACTGTGCCTTTCTCAACAAGCATGGCCTAGTGGACGGCGTCATTA
GCCAGGACTCGGATTGCTTTGCCTATGGAGCCGTTCGTGTCTATCGCAAC
TTCTCCGTTTCCACCCAAGGAGCCCAGGCAGCCGCCGGCGGAGCTGTGGA
CATCTACGACATGCGGGAGATCACATCCCGAATGGACTTTGGCCAACAGA
AGATCATTGTGATGGCTTTGCTCTGCGGCTGTGATTATTGTCCTGATGGC
ATAGGTGGCATTGGCAAGGATGGCGTCCTAAAGCTGTTCAACAAGTACAA
GGAGACTGAGATTTTGGATAGAATGAGAAGCTGGCGTGGTGAAACCGATA
AATACAATGCCTTGGAGATCCGAGTGGACGACAAATCCATCTGCAGCAAT
TGTGGCCACATTGGCAAGACCCAGAGCCACACAAAAAGTGGCTGCAGTGT
GTGTCGCACACACAAAGGCTGCGATGAGAGTCTCTGGAAAGAACAACGAC
TATCCATTAAGTCCGAGTTGACTTTGAGGCGGAAAGCCCTATTATCTCCT
GACTTTCCCAACGAAGAGATCATTGCCGAGTTTCTCAGCGAACCCGACAC
CATTCCCAATCTAAATCTCAACTGGCGGCAACCAAATCTTGTCAAATTCA
TCAAACAAATCGGACATCTCTTGCAGTGGCCAGAAATATACTGCTTCCAA
AAGTTCTTTCCCATACTCACACGCTGGCAGGTGCAGCAATCGAAGCAGGA
GAAGATACTTATCCAGCCACACGAGATTATCAAAAAGCGAACTGTGAAGG
GTGTGCCCAGCTTAGAATTGCGCTGGCACGATCCCAGTGGCATCTTCAAG
GGTCTTATTCCGGACAAGCAGATTGCGGAGTACGAAGCGGAGCATCCCAA
GGGAATCGAGGAACTTTACTACACCATTGAGCCATTGGACATGCTGGAGA
CAGCGTATCCCGATTTAGTAGCGGCCTTTTTGAAGTCGAAGGAGAAGCCC
GCCAAGAAAACCACGCGAAAGAAGAAAACCGCATCTGAAGAGGAGAATAA
GGAAAACGAGCCGAATTCGAAACCAAAGCGAGTGGTCAGAAAGATAAAGG
CTCAGCCTGAAGAGAACCAGCCATTACTGCACCAATTCCTAGGGCGCAAG
AAGGAAGGTACTCCGGTCAAGGCTCCCGCTCCGCAACGTCAGCAATGCTC
CACCCCCATCACCAAGTTCCTGCCCTCCGATCTGGAAAGCGATTGCGATG
CCGAAGAGTTCGATATGTCGGACATAGTTAAAGGCATTATCTCGAATCCG
AATGCCAAGCCAGCACTGACCAACCACGATGGTCACCAGCTTCATTACGA
ACCCATGGCGGAAGATTTGAGCTTACGTCTGGCGCAGATGAGTCTAGGAA
ATGTGAATGAATCGCCCAAAGTGGAAACGAAAAGAGATCTCTCTCAAGTG
GATCAACTACCGCAGAGTAAGCGATTCTCCTTGGAGGACAGTTTTGATCT
GCTGGTCAAGGGAGATCTGCAGAAGCTGGCCAGGACGCCAGTGGAGCGAT
TCAAGATGCAGCATCGCATCAGCGAAAAGATTCCAACGCCAGTGAAGCCC
TTGGATAACATAAGTTACTTCTTCAATCAAAGTTCCGATAATGCGGATGT
CTTTGAAGAGTTGATGAACTCCAGCTTGGTGCCCCAGGATCAAGAGGATA
ACGCAGAAGATGAGGAGGAGGATGACCTGGTAGTGATTAGTGATGCAAGC
TTTCTAGACCAT
BO13533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2181 | CG10670-PA | 1..2178 | 17..2194 | 10890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 76..2253 | 17..2194 | 10890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5149869..5151123 | 2194..940 | 6275 | 100 | Minus |
| 3L | 28110227 | 3L | 5151770..5152076 | 481..175 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 5151415..5151704 | 771..482 | 1450 | 100 | Minus |
| 3L | 28110227 | 3L | 5151179..5151348 | 939..770 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 5152143..5152301 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:43:06 has no hits.
BO13533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:28 Download gff for
BO13533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 47..2236 | 17..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:56 Download gff for
BO13533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..2253 | 17..2196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:56 Download gff for
BO13533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 47..2224 | 17..2196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:47 Download gff for
BO13533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..2253 | 17..2196 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:47 Download gff for
BO13533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5152144..5152301 | 17..174 | 100 | | Minus |
| 3L | 5151415..5151704 | 482..771 | 100 | <- | Minus |
| 3L | 5149867..5151123 | 940..2196 | 99 | <- | Minus |
| 3L | 5151179..5151346 | 772..939 | 100 | <- | Minus |
| 3L | 5151770..5152076 | 175..481 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:56 Download gff for
BO13533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5145244..5145401 | 17..174 | 100 | | Minus |
| arm_3L | 5142967..5144223 | 940..2196 | 99 | <- | Minus |
| arm_3L | 5144279..5144446 | 772..939 | 100 | <- | Minus |
| arm_3L | 5144515..5144804 | 482..771 | 100 | <- | Minus |
| arm_3L | 5144870..5145176 | 175..481 | 100 | <- | Minus |
BO13533.pep Sequence
Translation from 16 to 2212
> BO13533.pep
MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRH
HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKN
SPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAF
LNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR
EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL
DRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHK
GCDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLN
LNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQ
PHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEEL
YYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPN
SKPKRVVRKIKAQPEENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITK
FLPSDLESDCDAEEFDMSDIVKGIISNPNAKPALTNHDGHQLHYEPMAED
LSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLVKGD
LQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELM
NSSLVPQDQEDNAEDEEEDDLVVISDASFLDH
BO13533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-PA | 726 | CG10670-PA | 1..726 | 1..726 | 3839 | 100 | Plus |
| Fen1-PA | 385 | CG8648-PA | 4..265 | 1..255 | 250 | 29.7 | Plus |
| mus201-PD | 1236 | CG10890-PD | 805..972 | 67..244 | 165 | 29.6 | Plus |
| mus201-PC | 1236 | CG10890-PC | 805..972 | 67..244 | 165 | 29.6 | Plus |
