Clone BO13535 Report

Search the DGRC for BO13535

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptstep-RA
Protein status:BO13535.pep: validated full length
Sequenced Size:1264

Clone Sequence Records

BO13535.3prime Sequence

855 bp (731 high quality bases) assembled on 2006-05-08

> BO13535.3prime
ATGGTCTAGAAAGCTTGCACTCTTGCTGAGTGCCTTTTTCTTTCTTTGTA
CCAGGATGTCATAAAACGGATTATGGCTTATGGACTGCGTCAAACGCTTG
ATCCACTCCTGCTGATCTTCCTCCGTGGCAGCGGACATGCGGTACACCGT
ATGCTTGCCCTCTACCACTTTGCCCTCAGAGTCAGTCTTGCATGCCTTGA
TTATATCAGCACCGCCCGTCGCAAACAACTCAAAGCAATGCGGTTTGCTG
CGATCGTGAATCTCGCGCACCGATATATTCTCCAGCGGTATAATTCCGCG
TGGTTCCTTATCCGTTGTGTATTCAAAATAGTATAAGCAATTATCGTTCA
AAATGAACCAACGTCGTTTCCACGATTTGTATCTGCCGCCTTGCTTCCAC
AGCCAGCCCTCCTTGTCGGGATTGAAGAAGGTGTGCATCAAATCATTTCC
ATCATCCTGTGGTATTTTAAATGGCTCTGTTCGAATTGACTCGTAAAGGG
ATTCCAGCAGGCCACGGGGCAAATCTCCGCCGTTGTTGATGCCACGATTC
ATCGATATGAATTGATCAACGGTGGGTTTGTCTTTAACAGATGGATTGTG
TAGTGAGGTATTTAGCATTATAATTGCGAAGCTGAGCACATAGCATGTGT
CCGTGTTGGTGAATATATCTGGATTTAGTTGACAGTAGCGCTGTGCGAAG
GTCTCCATCATGCGATCGATCTTTTGTGCCTCGCCGGGCAGGCGAAACGA
CCACAGAAATTGTCTGAGGGCTTGTACGAGAATGAGATTGGTGAAATCGT
GAAGCGCCACAAAAGCCTTAAGCACATCCTCATTAAAATCGTTTTTCTCG
CCGAG

BO13535.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11628-PB 1467 Grp1-RB 628..1464 855..19 4185 100 Minus
CG11628-PA 1233 Grp1-RA 394..1230 855..19 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
step-RE 4776 CG11628-RE 2395..3231 855..19 4185 100 Minus
step-RD 3095 CG11628-RD 1927..2763 855..19 4185 100 Minus
step-RC 2834 CG11628-RC 1666..2502 855..19 4185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21741793..21742010 167..384 1090 100 Plus
2L 23513712 2L 21742075..21742280 383..588 1030 100 Plus
2L 23513712 2L 21742522..21742701 587..766 900 100 Plus
2L 23513712 2L 21741586..21741735 19..168 750 100 Plus
2L 23513712 2L 21742776..21742867 764..855 460 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:32:34 has no hits.

BO13535.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:03 Download gff for BO13535.3prime
Subject Subject Range Query Range Percent Splice Strand
Grp1-PA 394..1233 15..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:49 Download gff for BO13535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11628-PA 394..1233 15..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:05 Download gff for BO13535.3prime
Subject Subject Range Query Range Percent Splice Strand
step-RC 1666..2505 15..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:38 Download gff for BO13535.3prime
Subject Subject Range Query Range Percent Splice Strand
step-RC 1666..2505 15..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:38 Download gff for BO13535.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21741583..21741735 15..168 98 <- Plus
2L 21741795..21742008 169..382 100 <- Plus
2L 21742075..21742280 383..588 100 <- Plus
2L 21742524..21742698 589..763 100 <- Plus
2L 21742776..21742867 764..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:05 Download gff for BO13535.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21741583..21741735 15..168 98 <- Plus
arm_2L 21741795..21742008 169..382 100 <- Plus
arm_2L 21742075..21742280 383..588 100 <- Plus
arm_2L 21742524..21742698 589..763 100 <- Plus
arm_2L 21742776..21742867 764..855 100   Plus

BO13535.5prime Sequence

854 bp (778 high quality bases) assembled on 2006-05-08

> BO13535.5prime
GAAGTTATCAGTCGACATGATTAGCGCAATGGACAATTTCGACAACAGGT
CGTACGGTGCCATATCAAAGGGGCGCAGTGAATTCTCAATGCCAGAACTT
ACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGCAGGA
ACTTTTACTCGAAATACAGCAAATTAAAGATGAGTTGTGCGAGGTTGTAT
CGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAAA
GATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAAA
AGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGG
ACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCATT
GGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGGC
TTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTCA
GACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGAT
CGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATAT
ATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATGC
TAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGAT
CAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCCG
TGGCCTGCTGGAATCCCTTTACGAGTCAATTCGAACAGAGCCATTTAAAA
TACCACAGGATGATGGAAATGATTTGATGCACACCTTCTTTCATCCCGAC
AAAG

BO13535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11628-PA 1233 Grp1-RA 1..836 17..852 4105 99.6 Plus
CG11628-PB 1467 Grp1-RB 521..1070 303..852 2700 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
step-RA 1736 CG11628-RA 225..1060 17..852 4135 99.6 Plus
step-RE 4776 CG11628-RE 2153..2837 168..852 3395 99.7 Plus
step-RD 3095 CG11628-RD 1685..2369 168..852 3395 99.7 Plus
step-RE 4776 CG11628-RE 225..377 17..169 750 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21742522..21742701 678..499 900 100 Minus
2L 23513712 2L 21742105..21742280 852..677 850 98.9 Minus
2L 23513712 2L 21743838..21743974 303..167 685 100 Minus
2L 23513712 2L 21742972..21743073 402..301 510 100 Minus
2L 23513712 2L 21742776..21742876 501..401 505 100 Minus
2L 23513712 2L 21756554..21756630 169..93 385 100 Minus
2L 23513712 2L 21757164..21757242 95..17 380 98.7 Minus
Blast to na_te.dros performed 2015-02-13 02:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2877..2957 89..172 124 65.9 Plus

BO13535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:04 Download gff for BO13535.5prime
Subject Subject Range Query Range Percent Splice Strand
Grp1-PA 1..837 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:51 Download gff for BO13535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11628-PA 1..837 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:29 Download gff for BO13535.5prime
Subject Subject Range Query Range Percent Splice Strand
step-RA 219..1061 8..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:24 Download gff for BO13535.5prime
Subject Subject Range Query Range Percent Splice Strand
step-RA 219..1061 8..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:24 Download gff for BO13535.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21742103..21742280 677..854 98 <- Minus
2L 21742524..21742698 502..676 100 <- Minus
2L 21742776..21742875 402..501 100 <- Minus
2L 21742973..21743071 303..401 100 <- Minus
2L 21743839..21743971 170..302 100 <- Minus
2L 21756554..21756627 96..169 100 <- Minus
2L 21757164..21757237 22..95 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:29 Download gff for BO13535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21757164..21757237 22..95 98 <- Minus
arm_2L 21742776..21742875 402..501 100 <- Minus
arm_2L 21742973..21743071 303..401 100 <- Minus
arm_2L 21743839..21743971 170..302 100 <- Minus
arm_2L 21756554..21756627 96..169 100 <- Minus
arm_2L 21742103..21742280 677..854 98 <- Minus
arm_2L 21742524..21742698 502..676 100 <- Minus

BO13535.complete Sequence

1264 bp assembled on 2006-10-11

GenBank Submission: FJ632818

> BO13535.complete
GAAGTTATCAGTCGACATGATTAGCGCAATGGACAATTTCGACAACAGGT
CGTACGGTGCCATATCAAAGGGGCGCAGTGAATTCTCAATGCCAGAACTT
ACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGCAGGA
ACTTTTACTCGAAATACAGCAAATTAAAGATGAGTTGTGCGAGGTTGTAT
CGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAAA
GATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAAA
AGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGG
ACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCATT
GGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGGC
TTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTCA
GACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGAT
CGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATAT
ATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATGC
TAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGAT
CAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCCG
TGGCCTGCTGGAATCCCTTTACGAGTCAATTCGAACAGAGCCATTTAAAA
TACCACAGGATGATGGAAATGATTTGATGCACACCTTCTTCAATCCCGAC
AAGGAGGGCTGGCTGTGGAAGCAAGGCGGCAGATACAAATCGTGGAAACG
ACGTTGGTTCATTTTGAACGATAATTGCTTATACTATTTTGAATACACAA
CGGATAAGGAACCACGCGGAATTATACCGCTGGAGAATATATCGGTGCGC
GAGATTCACGATCGCAGCAAACCGCATTGCTTTGAGTTGTTTGCGACGGG
CGGTGCTGATATAATCAAGGCATGCAAGACTGACTCTGAGGGCAAAGTGG
TAGAGGGCAAGCATACGGTGTACCGCATGTCCGCTGCCACGGAGGAAGAT
CAGCAGGAGTGGATCAAGCGTTTGACGCAGTCCATAAGCCATAATCCGTT
TTATGACATCCTGGTACAAAGAAAGAAAAAGGCACTCAGCAAGAGTGCAA
GCTTTCTAGACCAT

BO13535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
step-RA 1233 CG11628-PA 1..1230 17..1246 6135 99.9 Plus
step-RE 2184 CG11628-PE 1103..2181 168..1246 5395 100 Plus
step-RD 2184 CG11628-PD 1103..2181 168..1246 5395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
step-RA 1736 CG11628-RA 225..1454 17..1246 6135 99.9 Plus
step-RE 4776 CG11628-RE 2153..3231 168..1246 5395 100 Plus
step-RD 3095 CG11628-RD 1685..2763 168..1246 5395 100 Plus
step-RE 4776 CG11628-RE 225..377 17..169 750 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21741793..21742010 1098..881 1090 100 Minus
2L 23513712 2L 21742075..21742280 882..677 1030 100 Minus
2L 23513712 2L 21742522..21742701 678..499 900 100 Minus
2L 23513712 2L 21741586..21741735 1246..1097 750 100 Minus
2L 23513712 2L 21743838..21743974 303..167 685 100 Minus
2L 23513712 2L 21742972..21743073 402..301 510 100 Minus
2L 23513712 2L 21742776..21742876 501..401 505 100 Minus
2L 23513712 2L 21756554..21756630 169..93 385 100 Minus
2L 23513712 2L 21757164..21757242 95..17 380 98.7 Minus
Blast to na_te.dros performed 2014-11-27 13:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2877..2957 89..172 124 65.9 Plus

BO13535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:57 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 1..1233 17..1250 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:56 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 220..1449 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:21 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 225..1454 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:57 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 214..1452 8..1250 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:31 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 225..1454 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:31 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21741795..21742008 883..1096 100 <- Minus
2L 21742075..21742280 677..882 100 <- Minus
2L 21742524..21742698 502..676 100 <- Minus
2L 21742776..21742875 402..501 100 <- Minus
2L 21742973..21743071 303..401 100 <- Minus
2L 21743839..21743971 170..302 100 <- Minus
2L 21756554..21756627 96..169 100 <- Minus
2L 21757164..21757242 17..95 98   Minus
2L 21741584..21741735 1097..1248 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:21 Download gff for BO13535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21741795..21742008 883..1096 100 <- Minus
arm_2L 21742075..21742280 677..882 100 <- Minus
arm_2L 21742524..21742698 502..676 100 <- Minus
arm_2L 21742776..21742875 402..501 100 <- Minus
arm_2L 21742973..21743071 303..401 100 <- Minus
arm_2L 21743839..21743971 170..302 100 <- Minus
arm_2L 21756554..21756627 96..169 100 <- Minus
arm_2L 21757164..21757242 17..95 98   Minus
arm_2L 21741584..21741735 1097..1248 98 <- Minus

BO13535.pep Sequence

Translation from 16 to 1264

> BO13535.pep
MISAMDNFDNRSYGAISKGRSEFSMPELTPEQQKLLIELRRKKQELLLEI
QQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYL
VENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALH
DFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTD
TCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLES
LYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFIL
NDNCLYYFEYTTDKEPRGIIPLENISVREIHDRSKPHCFELFATGGADII
KACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSISHNPFYDILV
QRKKKALSKSASFLDH

BO13535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
step-PA 410 CG11628-PA 1..410 1..410 2176 100 Plus
step-PE 727 CG11628-PE 352..727 28..410 1932 95.3 Plus
step-PD 727 CG11628-PD 352..727 28..410 1932 95.3 Plus
step-PC 727 CG11628-PC 352..727 28..410 1932 95.3 Plus
Sec71-PA 1653 CG7578-PA 571..774 68..267 448 45.6 Plus