Clone Sequence Records
BO13535.3prime Sequence
855 bp (731 high quality bases) assembled on 2006-05-08
> BO13535.3prime
ATGGTCTAGAAAGCTTGCACTCTTGCTGAGTGCCTTTTTCTTTCTTTGTA
CCAGGATGTCATAAAACGGATTATGGCTTATGGACTGCGTCAAACGCTTG
ATCCACTCCTGCTGATCTTCCTCCGTGGCAGCGGACATGCGGTACACCGT
ATGCTTGCCCTCTACCACTTTGCCCTCAGAGTCAGTCTTGCATGCCTTGA
TTATATCAGCACCGCCCGTCGCAAACAACTCAAAGCAATGCGGTTTGCTG
CGATCGTGAATCTCGCGCACCGATATATTCTCCAGCGGTATAATTCCGCG
TGGTTCCTTATCCGTTGTGTATTCAAAATAGTATAAGCAATTATCGTTCA
AAATGAACCAACGTCGTTTCCACGATTTGTATCTGCCGCCTTGCTTCCAC
AGCCAGCCCTCCTTGTCGGGATTGAAGAAGGTGTGCATCAAATCATTTCC
ATCATCCTGTGGTATTTTAAATGGCTCTGTTCGAATTGACTCGTAAAGGG
ATTCCAGCAGGCCACGGGGCAAATCTCCGCCGTTGTTGATGCCACGATTC
ATCGATATGAATTGATCAACGGTGGGTTTGTCTTTAACAGATGGATTGTG
TAGTGAGGTATTTAGCATTATAATTGCGAAGCTGAGCACATAGCATGTGT
CCGTGTTGGTGAATATATCTGGATTTAGTTGACAGTAGCGCTGTGCGAAG
GTCTCCATCATGCGATCGATCTTTTGTGCCTCGCCGGGCAGGCGAAACGA
CCACAGAAATTGTCTGAGGGCTTGTACGAGAATGAGATTGGTGAAATCGT
GAAGCGCCACAAAAGCCTTAAGCACATCCTCATTAAAATCGTTTTTCTCG
CCGAG
BO13535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11628-PB | 1467 | Grp1-RB | 628..1464 | 855..19 | 4185 | 100 | Minus |
CG11628-PA | 1233 | Grp1-RA | 394..1230 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
step-RE | 4776 | CG11628-RE | 2395..3231 | 855..19 | 4185 | 100 | Minus |
step-RD | 3095 | CG11628-RD | 1927..2763 | 855..19 | 4185 | 100 | Minus |
step-RC | 2834 | CG11628-RC | 1666..2502 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21741793..21742010 | 167..384 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 21742075..21742280 | 383..588 | 1030 | 100 | Plus |
2L | 23513712 | 2L | 21742522..21742701 | 587..766 | 900 | 100 | Plus |
2L | 23513712 | 2L | 21741586..21741735 | 19..168 | 750 | 100 | Plus |
2L | 23513712 | 2L | 21742776..21742867 | 764..855 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:32:34 has no hits.
BO13535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:03 Download gff for
BO13535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Grp1-PA | 394..1233 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:49 Download gff for
BO13535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11628-PA | 394..1233 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:05 Download gff for
BO13535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RC | 1666..2505 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:38 Download gff for
BO13535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RC | 1666..2505 | 15..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:38 Download gff for
BO13535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21741583..21741735 | 15..168 | 98 | <- | Plus |
2L | 21741795..21742008 | 169..382 | 100 | <- | Plus |
2L | 21742075..21742280 | 383..588 | 100 | <- | Plus |
2L | 21742524..21742698 | 589..763 | 100 | <- | Plus |
2L | 21742776..21742867 | 764..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:05 Download gff for
BO13535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21741583..21741735 | 15..168 | 98 | <- | Plus |
arm_2L | 21741795..21742008 | 169..382 | 100 | <- | Plus |
arm_2L | 21742075..21742280 | 383..588 | 100 | <- | Plus |
arm_2L | 21742524..21742698 | 589..763 | 100 | <- | Plus |
arm_2L | 21742776..21742867 | 764..855 | 100 | | Plus |
BO13535.5prime Sequence
854 bp (778 high quality bases) assembled on 2006-05-08
> BO13535.5prime
GAAGTTATCAGTCGACATGATTAGCGCAATGGACAATTTCGACAACAGGT
CGTACGGTGCCATATCAAAGGGGCGCAGTGAATTCTCAATGCCAGAACTT
ACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGCAGGA
ACTTTTACTCGAAATACAGCAAATTAAAGATGAGTTGTGCGAGGTTGTAT
CGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAAA
GATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAAA
AGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGG
ACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCATT
GGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGGC
TTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTCA
GACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGAT
CGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATAT
ATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATGC
TAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGAT
CAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCCG
TGGCCTGCTGGAATCCCTTTACGAGTCAATTCGAACAGAGCCATTTAAAA
TACCACAGGATGATGGAAATGATTTGATGCACACCTTCTTTCATCCCGAC
AAAG
BO13535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11628-PA | 1233 | Grp1-RA | 1..836 | 17..852 | 4105 | 99.6 | Plus |
CG11628-PB | 1467 | Grp1-RB | 521..1070 | 303..852 | 2700 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
step-RA | 1736 | CG11628-RA | 225..1060 | 17..852 | 4135 | 99.6 | Plus |
step-RE | 4776 | CG11628-RE | 2153..2837 | 168..852 | 3395 | 99.7 | Plus |
step-RD | 3095 | CG11628-RD | 1685..2369 | 168..852 | 3395 | 99.7 | Plus |
step-RE | 4776 | CG11628-RE | 225..377 | 17..169 | 750 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21742522..21742701 | 678..499 | 900 | 100 | Minus |
2L | 23513712 | 2L | 21742105..21742280 | 852..677 | 850 | 98.9 | Minus |
2L | 23513712 | 2L | 21743838..21743974 | 303..167 | 685 | 100 | Minus |
2L | 23513712 | 2L | 21742972..21743073 | 402..301 | 510 | 100 | Minus |
2L | 23513712 | 2L | 21742776..21742876 | 501..401 | 505 | 100 | Minus |
2L | 23513712 | 2L | 21756554..21756630 | 169..93 | 385 | 100 | Minus |
2L | 23513712 | 2L | 21757164..21757242 | 95..17 | 380 | 98.7 | Minus |
Blast to na_te.dros performed 2015-02-13 02:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2877..2957 | 89..172 | 124 | 65.9 | Plus |
BO13535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:04 Download gff for
BO13535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Grp1-PA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:51 Download gff for
BO13535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11628-PA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:29 Download gff for
BO13535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 219..1061 | 8..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:24 Download gff for
BO13535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 219..1061 | 8..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:24 Download gff for
BO13535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21742103..21742280 | 677..854 | 98 | <- | Minus |
2L | 21742524..21742698 | 502..676 | 100 | <- | Minus |
2L | 21742776..21742875 | 402..501 | 100 | <- | Minus |
2L | 21742973..21743071 | 303..401 | 100 | <- | Minus |
2L | 21743839..21743971 | 170..302 | 100 | <- | Minus |
2L | 21756554..21756627 | 96..169 | 100 | <- | Minus |
2L | 21757164..21757237 | 22..95 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:29 Download gff for
BO13535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21757164..21757237 | 22..95 | 98 | <- | Minus |
arm_2L | 21742776..21742875 | 402..501 | 100 | <- | Minus |
arm_2L | 21742973..21743071 | 303..401 | 100 | <- | Minus |
arm_2L | 21743839..21743971 | 170..302 | 100 | <- | Minus |
arm_2L | 21756554..21756627 | 96..169 | 100 | <- | Minus |
arm_2L | 21742103..21742280 | 677..854 | 98 | <- | Minus |
arm_2L | 21742524..21742698 | 502..676 | 100 | <- | Minus |
BO13535.complete Sequence
1264 bp assembled on 2006-10-11
GenBank Submission: FJ632818
> BO13535.complete
GAAGTTATCAGTCGACATGATTAGCGCAATGGACAATTTCGACAACAGGT
CGTACGGTGCCATATCAAAGGGGCGCAGTGAATTCTCAATGCCAGAACTT
ACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGCAGGA
ACTTTTACTCGAAATACAGCAAATTAAAGATGAGTTGTGCGAGGTTGTAT
CGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAAA
GATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAAA
AGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGG
ACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCATT
GGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGGC
TTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTCA
GACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGAT
CGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATAT
ATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATGC
TAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGAT
CAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCCG
TGGCCTGCTGGAATCCCTTTACGAGTCAATTCGAACAGAGCCATTTAAAA
TACCACAGGATGATGGAAATGATTTGATGCACACCTTCTTCAATCCCGAC
AAGGAGGGCTGGCTGTGGAAGCAAGGCGGCAGATACAAATCGTGGAAACG
ACGTTGGTTCATTTTGAACGATAATTGCTTATACTATTTTGAATACACAA
CGGATAAGGAACCACGCGGAATTATACCGCTGGAGAATATATCGGTGCGC
GAGATTCACGATCGCAGCAAACCGCATTGCTTTGAGTTGTTTGCGACGGG
CGGTGCTGATATAATCAAGGCATGCAAGACTGACTCTGAGGGCAAAGTGG
TAGAGGGCAAGCATACGGTGTACCGCATGTCCGCTGCCACGGAGGAAGAT
CAGCAGGAGTGGATCAAGCGTTTGACGCAGTCCATAAGCCATAATCCGTT
TTATGACATCCTGGTACAAAGAAAGAAAAAGGCACTCAGCAAGAGTGCAA
GCTTTCTAGACCAT
BO13535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
step-RA | 1233 | CG11628-PA | 1..1230 | 17..1246 | 6135 | 99.9 | Plus |
step-RE | 2184 | CG11628-PE | 1103..2181 | 168..1246 | 5395 | 100 | Plus |
step-RD | 2184 | CG11628-PD | 1103..2181 | 168..1246 | 5395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
step-RA | 1736 | CG11628-RA | 225..1454 | 17..1246 | 6135 | 99.9 | Plus |
step-RE | 4776 | CG11628-RE | 2153..3231 | 168..1246 | 5395 | 100 | Plus |
step-RD | 3095 | CG11628-RD | 1685..2763 | 168..1246 | 5395 | 100 | Plus |
step-RE | 4776 | CG11628-RE | 225..377 | 17..169 | 750 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21741793..21742010 | 1098..881 | 1090 | 100 | Minus |
2L | 23513712 | 2L | 21742075..21742280 | 882..677 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 21742522..21742701 | 678..499 | 900 | 100 | Minus |
2L | 23513712 | 2L | 21741586..21741735 | 1246..1097 | 750 | 100 | Minus |
2L | 23513712 | 2L | 21743838..21743974 | 303..167 | 685 | 100 | Minus |
2L | 23513712 | 2L | 21742972..21743073 | 402..301 | 510 | 100 | Minus |
2L | 23513712 | 2L | 21742776..21742876 | 501..401 | 505 | 100 | Minus |
2L | 23513712 | 2L | 21756554..21756630 | 169..93 | 385 | 100 | Minus |
2L | 23513712 | 2L | 21757164..21757242 | 95..17 | 380 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-27 13:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2877..2957 | 89..172 | 124 | 65.9 | Plus |
BO13535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:57 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 1..1233 | 17..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:56 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 220..1449 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:21 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 225..1454 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:57 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 214..1452 | 8..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:31 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RA | 225..1454 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:31 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21741795..21742008 | 883..1096 | 100 | <- | Minus |
2L | 21742075..21742280 | 677..882 | 100 | <- | Minus |
2L | 21742524..21742698 | 502..676 | 100 | <- | Minus |
2L | 21742776..21742875 | 402..501 | 100 | <- | Minus |
2L | 21742973..21743071 | 303..401 | 100 | <- | Minus |
2L | 21743839..21743971 | 170..302 | 100 | <- | Minus |
2L | 21756554..21756627 | 96..169 | 100 | <- | Minus |
2L | 21757164..21757242 | 17..95 | 98 | | Minus |
2L | 21741584..21741735 | 1097..1248 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:21 Download gff for
BO13535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21741795..21742008 | 883..1096 | 100 | <- | Minus |
arm_2L | 21742075..21742280 | 677..882 | 100 | <- | Minus |
arm_2L | 21742524..21742698 | 502..676 | 100 | <- | Minus |
arm_2L | 21742776..21742875 | 402..501 | 100 | <- | Minus |
arm_2L | 21742973..21743071 | 303..401 | 100 | <- | Minus |
arm_2L | 21743839..21743971 | 170..302 | 100 | <- | Minus |
arm_2L | 21756554..21756627 | 96..169 | 100 | <- | Minus |
arm_2L | 21757164..21757242 | 17..95 | 98 | | Minus |
arm_2L | 21741584..21741735 | 1097..1248 | 98 | <- | Minus |
BO13535.pep Sequence
Translation from 16 to 1264
> BO13535.pep
MISAMDNFDNRSYGAISKGRSEFSMPELTPEQQKLLIELRRKKQELLLEI
QQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYL
VENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALH
DFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTD
TCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLES
LYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFIL
NDNCLYYFEYTTDKEPRGIIPLENISVREIHDRSKPHCFELFATGGADII
KACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSISHNPFYDILV
QRKKKALSKSASFLDH
BO13535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
step-PA | 410 | CG11628-PA | 1..410 | 1..410 | 2176 | 100 | Plus |
step-PE | 727 | CG11628-PE | 352..727 | 28..410 | 1932 | 95.3 | Plus |
step-PD | 727 | CG11628-PD | 352..727 | 28..410 | 1932 | 95.3 | Plus |
step-PC | 727 | CG11628-PC | 352..727 | 28..410 | 1932 | 95.3 | Plus |
Sec71-PA | 1653 | CG7578-PA | 571..774 | 68..267 | 448 | 45.6 | Plus |