Clone Sequence Records
BO13539.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-05-08
> BO13539.5prime
GAAGTTATCAGTCGACATGAACTCACAAAAAGAATACGTATCGGACTGCG
AAACCGACGATGATTATTATGTCGATTTGTTAACTTCAGGCAAGGGCAGT
GATAAGAGTGAAAGTGATGTGTCGGACAAGTCTGAAAATTATCCAGGCCT
AAAATCAAAGCATACTGCGAAGGCATTGCGGAAAACAAGGCATTGTGACG
GCGATAATAGGGAATACAGGTCTAAGGAGTGCGACGACCTTCATTCCGAA
GAGGAGTCTGAAAAATCGCGGTCGGATGCTTTATGGGCCGATTTTCTTGG
CGACATTGATACTAAAAGCGTAATCAACCAAAAAACAGATTATACGGAGG
GAAACGCAGCAAGTGCTACCAATACCAATACGCATGAGACTTGTAATAAA
TATGATAAAAACGATACGGCAATAATAAAAACTGCACAGCAATACGATTC
CAAAAGAACCACGCTTTCAGTTTCCACACTCGGAAAAATTAAACGATCAT
CCGCTGAAAAGAGTATCGGTACCATGATAAATAAATTTGAAAAGAAGAAA
AAATTGACAGTGCTTGAAAGGTCACAATTGGATTGGAAAATATTTAAACA
AGACGAAGGCATAGACGAACTTCTGTGCTCGCATAACAAAGGCAAGGACG
GGTATTTGGACCGTCAAGACTTTTTGGAGAGAACCGATCTTAGGCAGTTT
GAAATGGAAAAGAAGTTGCGGCTGTCTCGCANGCCATACGCAAGCTTTCT
AGACC
BO13539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:06:15 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..757 | 17..739 | 3604 | 99.9 | Plus |
| Yeti-RA | 899 | CG40218-RA | 35..757 | 17..739 | 3604 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 653..17 | 3185 | 100 | Minus |
| 2R | 25286936 | 2R | 1344294..1344382 | 739..651 | 434 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:09:30 has no hits.
BO13539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:08 Download gff for
BO13539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:41 Download gff for
BO13539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 9..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:41 Download gff for
BO13539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344291..1344381 | 652..743 | 96 | <- | Minus |
| 2R | 1344451..1345093 | 9..651 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:08 Download gff for
BO13539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470924..471014 | 652..743 | 96 | <- | Minus |
| 2RHet | 471084..471726 | 9..651 | 99 | | Minus |
BO13539.3prime Sequence
755 bp (747 high quality bases) assembled on 2006-05-08
> BO13539.3prime
ATGGTCTAGAAAGCTTGCGTATGGCCTGCGAGACAGCCGCAACTTCTTTT
CCATTTCAAACTGCCTAAGATCGGTTCTCTCCAAAAAGTCTTGACGGTCC
AAATACCCGTCCTTGCCTTTGTTATGCGAGCACAGAAGTTCGTCTATGCC
TTCGTCTTGTTTAAATATTTTCCAATCCAATTGTGACCTTTCAAGCACTG
TCAATTTTTTCTTCTTTTCAAATTTATTTATCATGGTACCGATACTCTTT
TCAGCGGATGATCGTTTAATTTTTCCGAGTGTGGAAACTGAAAGCGTGGT
TCTTTTGGAATCGTATTGCTGTGCAGTTTTTATTATTGCCGTATCGTTTT
TATCATATTTATTACAAGTCTCATGCGTATTGGTATTGGTAGCACTTGCT
GCGTTTCCCTCCGTATAATCTGTTTTTTGGTTGATTACGCTTTTAGTATC
AATGTCGCCAAGAAAATCGGCCCATAAAGCATCCGACCGCGATTTTTCAG
ACTCCTCTTCGGAATGAAGGTCGTCGCACTCCTTAGACCTGTATTCCCTA
TTATCGCCGTCACAATGCCTTGTTTTCCGCAATGCCTTCGCAGTATGCTT
TGATTTTAGGCCTGGATAATTTTCAGACTTGTCCGACACATCACTTTCAC
TCTTATCACTGCCCTTGCCTGAAGTTAACAAATCGACATAATAATCATCG
TCGGTTTCGCAGTCCGATACGTATTCTTTTTGTGAGTTCATGTCGACTGA
TAACT
BO13539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:06:14 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..757 | 741..19 | 3615 | 100 | Minus |
| Yeti-RA | 899 | CG40218-RA | 35..757 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 105..741 | 3185 | 100 | Plus |
| 2R | 25286936 | 2R | 1344294..1344382 | 19..107 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:32:30 has no hits.
BO13539.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:29 Download gff for
BO13539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 15..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:07:33 Download gff for
BO13539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 15..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:07:33 Download gff for
BO13539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344291..1344381 | 15..106 | 97 | <- | Plus |
| 2R | 1344451..1345093 | 107..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:29 Download gff for
BO13539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470924..471014 | 15..106 | 97 | <- | Plus |
| 2RHet | 471084..471726 | 107..749 | 99 | | Plus |
BO13539.complete Sequence
757 bp assembled on 2006-10-11
GenBank Submission: FJ632819
> BO13539.complete
GAAGTTATCAGTCGACATGAACTCACAAAAAGAATACGTATCGGACTGCG
AAACCGACGATGATTATTATGTCGATTTGTTAACTTCAGGCAAGGGCAGT
GATAAGAGTGAAAGTGATGTGTCGGACAAGTCTGAAAATTATCCAGGCCT
AAAATCAAAGCATACTGCGAAGGCATTGCGGAAAACAAGGCATTGTGACG
GCGATAATAGGGAATACAGGTCTAAGGAGTGCGACGACCTTCATTCCGAA
GAGGAGTCTGAAAAATCGCGGTCGGATGCTTTATGGGCCGATTTTCTTGG
CGACATTGATACTAAAAGCGTAATCAACCAAAAAACAGATTATACGGAGG
GAAACGCAGCAAGTGCTACCAATACCAATACGCATGAGACTTGTAATAAA
TATGATAAAAACGATACGGCAATAATAAAAACTGCACAGCAATACGATTC
CAAAAGAACCACGCTTTCAGTTTCCACACTCGGAAAAATTAAACGATCAT
CCGCTGAAAAGAGTATCGGTACCATGATAAATAAATTTGAAAAGAAGAAA
AAATTGACAGTGCTTGAAAGGTCACAATTGGATTGGAAAATATTTAAACA
AGACGAAGGCATAGACGAACTTCTGTGCTCGCATAACAAAGGCAAGGACG
GGTATTTGGACCGTCAAGACTTTTTGGAGAGAACCGATCTTAGGCAGTTT
GAAATGGAAAAGAAGTTGCGGCTGTCTCGCAGGCCATACGCAAGCTTTCT
AGACCAT
BO13539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 726 | CG40218-PB | 1..723 | 17..739 | 3615 | 100 | Plus |
| Yeti-RA | 726 | CG40218-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..757 | 17..739 | 3615 | 100 | Plus |
| Yeti-RA | 899 | CG40218-RA | 35..757 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 653..17 | 3185 | 100 | Minus |
| 2R | 25286936 | 2R | 1344294..1344382 | 739..651 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:46 has no hits.
BO13539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:58 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:14 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 22..755 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:51 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 35..757 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:58 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 22..755 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:15 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 35..757 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:15 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344292..1344381 | 652..741 | 97 | <- | Minus |
| 2R | 1344451..1345085 | 17..651 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:51 Download gff for
BO13539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470925..471014 | 652..741 | 97 | <- | Minus |
| 2RHet | 471084..471718 | 17..651 | 100 | | Minus |
BO13539.pep Sequence
Translation from 16 to 757
> BO13539.pep
MNSQKEYVSDCETDDDYYVDLLTSGKGSDKSESDVSDKSENYPGLKSKHT
AKALRKTRHCDGDNREYRSKECDDLHSEEESEKSRSDALWADFLGDIDTK
SVINQKTDYTEGNAASATNTNTHETCNKYDKNDTAIIKTAQQYDSKRTTL
SVSTLGKIKRSSAEKSIGTMINKFEKKKKLTVLERSQLDWKIFKQDEGID
ELLCSHNKGKDGYLDRQDFLERTDLRQFEMEKKLRLSRRPYASFLDH
BO13539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-PB | 241 | CG40218-PB | 1..241 | 1..241 | 1261 | 100 | Plus |
| Yeti-PA | 241 | CG40218-PA | 1..241 | 1..241 | 1261 | 100 | Plus |
