Clone Sequence Records
BO13540.3prime Sequence
798 bp (775 high quality bases) assembled on 2006-05-08
> BO13540.3prime
ATGGTCTAGAAAGCTTGCAACACAAGTCATAGGGTTTTCCGTTTGGAATC
CACAAGAGTATATGTCGTAAAAGTCCTTGTTCTGTTTAAGGCCCAGATAG
AAGACATGCTCGGCCAGATCCTTCCCAAACTCACAGAAGTTCTGAGCGTA
AAGAGTAAAAAATATACGCTTGTTGTCAAGATGGTACTTTTGAAGGACGC
CATTTTCCTGATCGTATATCCCACTGTTCTGTGGAGGCGAGTTGATCCAG
GCGCTGTAGTCTATCCAGGCCGCTCGGAAGCTCTTTAAGTAGATCACAGC
CAGCATTCTGGCCTCATCCAGAACATTAACGAACTGCGGCAGCCTTAAAC
ACTCCACATCTTCGCGAAACCGCGTGAAATCACGCTGACGCTCCAGACTA
TTAAAAAGCATCATGTACAAATGGACCGTAAACGTGGAGTAGAAGTAGGA
CATGGGCTTGTTGCGGCTCTGAAAGAGGTACATGCTCCAATCCAGCATGG
TGCGCTGAACCCCCAATTCGTATGTTGAATTCAGTTTTCTGTGCTGCTCC
AGATTGCGAACGTTGTGTTCGTAGCTCTCCCGGTAGATCCGCAGGTCCTT
GTACTCCCGGCTCAGGTCTCTAGCATGGAAGTAGACTCGCGGCGTTTTAA
ATTTCTGCTTATACGTGGCCAGCTTGCTGAGAATGGGATTCGACTCTCTG
TCCTTCTGAAACCTGACGACGAAGCGGTCCAAAATGCCCAGAAAGTCATC
CAGCTCGTGGGATTCTCCATTGAGCATGTTTTTTGTAACTATATACCC
BO13540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-PA | 1203 | CG1092-RA | 421..1200 | 798..19 | 3900 | 100 | Minus |
CG1092-PB | 948 | CG1092-RB | 166..945 | 798..19 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1310 | CG1092-RD | 425..1204 | 798..19 | 3900 | 100 | Minus |
CG1092-RC | 1492 | CG1092-RC | 607..1386 | 798..19 | 3900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4267431..4268210 | 798..19 | 3900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:09:36 has no hits.
BO13540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:10 Download gff for
BO13540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-PA | 403..1185 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:56 Download gff for
BO13540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-PB | 166..948 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:07 Download gff for
BO13540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 607..1389 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:32 Download gff for
BO13540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 607..1389 | 15..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:32 Download gff for
BO13540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4267431..4268207 | 22..798 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:07 Download gff for
BO13540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 93153..93929 | 22..798 | 100 | -> | Minus |
BO13540.5prime Sequence
833 bp (752 high quality bases) assembled on 2006-05-08
> BO13540.5prime
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAA
TTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAG
CCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGT
ACATGATGCTTTTTTATAGTCTGGAGCGTCAGC
BO13540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-PA | 1203 | CG1092-RA | 19..835 | 17..833 | 4060 | 99.8 | Plus |
CG1092-PB | 948 | CG1092-RB | 1..580 | 254..833 | 2875 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1310 | CG1092-RD | 23..839 | 17..833 | 4070 | 99.9 | Plus |
CG1092-RC | 1492 | CG1092-RC | 205..1021 | 17..833 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4267260..4267845 | 248..833 | 2915 | 99.8 | Plus |
3R | 32079331 | 3R | 4266974..4267206 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:57:59 has no hits.
BO13540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:11 Download gff for
BO13540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:58 Download gff for
BO13540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-PA | 13..835 | 8..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:29 Download gff for
BO13540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 199..1021 | 8..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:47 Download gff for
BO13540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 199..1021 | 8..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:47 Download gff for
BO13540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4266968..4267205 | 8..248 | 98 | -> | Plus |
3R | 4267261..4267845 | 249..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:29 Download gff for
BO13540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 92690..92927 | 8..248 | 98 | -> | Plus |
arm_3R | 92983..93567 | 249..833 | 99 | | Plus |
BO13540.complete Sequence
1216 bp assembled on 2007-10-17
GenBank Submission: FJ632820
> BO13540.complete
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAA
TTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAG
CCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGT
ACATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTT
CGCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTCTGGA
TGAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCGGCCT
GGATAGACTACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGGGATA
TACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACAAGCG
TATATTTTTTACTCTTTACGCTCAGAACTTCTGTGAGTTTGGGAAGGATC
TGGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTTTTAC
GACATATACTCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTGTTGC
AAGCTTTCTAGACCAT
BO13540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1185 | CG1092-PD | 1..1182 | 17..1198 | 5910 | 100 | Plus |
CG1092-RC | 1185 | CG1092-PC | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1310 | CG1092-RD | 23..1204 | 17..1198 | 5910 | 100 | Plus |
CG1092-RC | 1492 | CG1092-RC | 205..1386 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4267260..4268210 | 248..1198 | 4755 | 100 | Plus |
3R | 32079331 | 3R | 4266974..4267206 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:34:36 has no hits.
BO13540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:01 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RA | 1..1134 | 68..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:04 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RA | 15..1205 | 8..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:58 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 205..1386 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:27 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RA | 21..1202 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:55 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 205..1386 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:55 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4267261..4268210 | 249..1200 | 99 | | Plus |
3R | 4266974..4267205 | 17..248 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:58 Download gff for
BO13540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 92983..93932 | 249..1200 | 99 | | Plus |
arm_3R | 92696..92927 | 17..248 | 100 | -> | Plus |
BO13540.pep Sequence
Translation from 16 to 1216
> BO13540.pep
MTTSSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKLSVRIQG
SINTEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPF
EAKQKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLNGESHEL
DDFLGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHARDLSREY
KDLRIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPM
SYFYSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVLDEARML
AVIYLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNKRIFFTL
YAQNFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCVASFLDH
BO13540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-PD | 394 | CG1092-PD | 1..394 | 1..394 | 2097 | 100 | Plus |
CG1092-PC | 394 | CG1092-PC | 1..394 | 1..394 | 2097 | 100 | Plus |