Clone BO13540 Report

Search the DGRC for BO13540

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:40
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO13540.pep: validated full length
Sequenced Size:1216

Clone Sequence Records

BO13540.3prime Sequence

798 bp (775 high quality bases) assembled on 2006-05-08

> BO13540.3prime
ATGGTCTAGAAAGCTTGCAACACAAGTCATAGGGTTTTCCGTTTGGAATC
CACAAGAGTATATGTCGTAAAAGTCCTTGTTCTGTTTAAGGCCCAGATAG
AAGACATGCTCGGCCAGATCCTTCCCAAACTCACAGAAGTTCTGAGCGTA
AAGAGTAAAAAATATACGCTTGTTGTCAAGATGGTACTTTTGAAGGACGC
CATTTTCCTGATCGTATATCCCACTGTTCTGTGGAGGCGAGTTGATCCAG
GCGCTGTAGTCTATCCAGGCCGCTCGGAAGCTCTTTAAGTAGATCACAGC
CAGCATTCTGGCCTCATCCAGAACATTAACGAACTGCGGCAGCCTTAAAC
ACTCCACATCTTCGCGAAACCGCGTGAAATCACGCTGACGCTCCAGACTA
TTAAAAAGCATCATGTACAAATGGACCGTAAACGTGGAGTAGAAGTAGGA
CATGGGCTTGTTGCGGCTCTGAAAGAGGTACATGCTCCAATCCAGCATGG
TGCGCTGAACCCCCAATTCGTATGTTGAATTCAGTTTTCTGTGCTGCTCC
AGATTGCGAACGTTGTGTTCGTAGCTCTCCCGGTAGATCCGCAGGTCCTT
GTACTCCCGGCTCAGGTCTCTAGCATGGAAGTAGACTCGCGGCGTTTTAA
ATTTCTGCTTATACGTGGCCAGCTTGCTGAGAATGGGATTCGACTCTCTG
TCCTTCTGAAACCTGACGACGAAGCGGTCCAAAATGCCCAGAAAGTCATC
CAGCTCGTGGGATTCTCCATTGAGCATGTTTTTTGTAACTATATACCC

BO13540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PA 1203 CG1092-RA 421..1200 798..19 3900 100 Minus
CG1092-PB 948 CG1092-RB 166..945 798..19 3900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1310 CG1092-RD 425..1204 798..19 3900 100 Minus
CG1092-RC 1492 CG1092-RC 607..1386 798..19 3900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267431..4268210 798..19 3900 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:09:36 has no hits.

BO13540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:10 Download gff for BO13540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-PA 403..1185 15..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:56 Download gff for BO13540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-PB 166..948 15..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:07 Download gff for BO13540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 607..1389 15..798 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:32 Download gff for BO13540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 607..1389 15..798 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:32 Download gff for BO13540.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4267431..4268207 22..798 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:07 Download gff for BO13540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 93153..93929 22..798 100 -> Minus

BO13540.5prime Sequence

833 bp (752 high quality bases) assembled on 2006-05-08

> BO13540.5prime
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAA
TTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAG
CCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGT
ACATGATGCTTTTTTATAGTCTGGAGCGTCAGC

BO13540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PA 1203 CG1092-RA 19..835 17..833 4060 99.8 Plus
CG1092-PB 948 CG1092-RB 1..580 254..833 2875 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1310 CG1092-RD 23..839 17..833 4070 99.9 Plus
CG1092-RC 1492 CG1092-RC 205..1021 17..833 4070 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267260..4267845 248..833 2915 99.8 Plus
3R 32079331 3R 4266974..4267206 17..249 1165 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:57:59 has no hits.

BO13540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:11 Download gff for BO13540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:58 Download gff for BO13540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-PA 13..835 8..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:29 Download gff for BO13540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 199..1021 8..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:47 Download gff for BO13540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 199..1021 8..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:47 Download gff for BO13540.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4266968..4267205 8..248 98 -> Plus
3R 4267261..4267845 249..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:29 Download gff for BO13540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92690..92927 8..248 98 -> Plus
arm_3R 92983..93567 249..833 99   Plus

BO13540.complete Sequence

1216 bp assembled on 2007-10-17

GenBank Submission: FJ632820

> BO13540.complete
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAA
TTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAG
CCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGT
ACATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTT
CGCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTCTGGA
TGAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCGGCCT
GGATAGACTACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGGGATA
TACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACAAGCG
TATATTTTTTACTCTTTACGCTCAGAACTTCTGTGAGTTTGGGAAGGATC
TGGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTTTTAC
GACATATACTCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTGTTGC
AAGCTTTCTAGACCAT

BO13540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1185 CG1092-PD 1..1182 17..1198 5910 100 Plus
CG1092-RC 1185 CG1092-PC 1..1182 17..1198 5910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1310 CG1092-RD 23..1204 17..1198 5910 100 Plus
CG1092-RC 1492 CG1092-RC 205..1386 17..1198 5910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267260..4268210 248..1198 4755 100 Plus
3R 32079331 3R 4266974..4267206 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:34:36 has no hits.

BO13540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:01 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 68..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:04 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 15..1205 8..1202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:58 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 205..1386 17..1200 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:27 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 21..1202 17..1200 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:55 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 205..1386 17..1200 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:55 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4267261..4268210 249..1200 99   Plus
3R 4266974..4267205 17..248 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:58 Download gff for BO13540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92983..93932 249..1200 99   Plus
arm_3R 92696..92927 17..248 100 -> Plus

BO13540.pep Sequence

Translation from 16 to 1216

> BO13540.pep
MTTSSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKLSVRIQG
SINTEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPF
EAKQKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLNGESHEL
DDFLGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHARDLSREY
KDLRIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPM
SYFYSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVLDEARML
AVIYLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNKRIFFTL
YAQNFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCVASFLDH

BO13540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 1..394 1..394 2097 100 Plus
CG1092-PC 394 CG1092-PC 1..394 1..394 2097 100 Plus