Clone BO13542 Report

Search the DGRC for BO13542

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4893-RA
Protein status:BO13542.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO13542.3prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO13542.3prime
ATGGTCTAGAAAGCTTGCGTGGGCATTGTCGTAGGTGTCCTTGTGCTGGT
AGCCACTCACATATCCGGATCCATCGACCACGTTCCGTCTGCCCGCGATA
CCCTTGCCCTTTCCGGAGGCATCGAAACGCTCCTTGTGGGAACCGGTGTA
CTTGCTCGTATCCGTCAATCGATCCACGGCAGCTGCGGCTTTTCCAGCCG
AAACGGACACAACTCCTGGAGCTCCACAACTGGCCAACTTTTGCTTGATC
TCCGACAGCTCCACCTTTTTCGTCTTGGCCAGATCGTCCAGGAATTTGTT
GTAGTCGCTGAGCGAGATCTTCATGGCCTTGAACTTCTTGAAGTGGATGC
CTGTATCCGTGGTGGTGATCTTCTTGTCGATAACTTTGGCCTGTTTCATC
CACTTGTCACTCTGCGACAGCGTTATCAGCTTGCCATCGGACTTGGAGTC
CCCGAACTTGGAGAAGGCCTTGAACTGATCCGAAAAGCTAACCTTGGGCT
CATCCTCCAGCGCCAATTGGGCCAACTCGGTAGCGGGCACCTCAGGAGTT
GGCGCTGGGGAGGGGCTTCCATTTGCTGCAGCTACCTCGGACATGTCGAC
TGATAACT

BO13542.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4893-PA 579 CG4893-RA 1..576 594..19 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 1169 CG45057-RB 151..727 595..19 2885 100 Minus
CG45057-RD 869 CG45057-RD 137..713 595..19 2885 100 Minus
CG45057-RC 840 CG45057-RC 108..684 595..19 2885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16355633..16356030 198..595 1990 100 Plus
3L 28110227 3L 16355188..16355372 19..203 910 99.5 Plus
Blast to na_te.dros performed 2015-02-02 19:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 528..477 113 71.2 Minus

BO13542.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:12 Download gff for BO13542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:59 Download gff for BO13542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:03 Download gff for BO13542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 103..684 19..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:24 Download gff for BO13542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 103..684 19..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:24 Download gff for BO13542.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16355188..16355367 19..198 100 <- Plus
3L 16355634..16356045 199..608 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:03 Download gff for BO13542.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16348288..16348467 19..198 100 <- Plus
arm_3L 16348734..16349145 199..608 98   Plus

BO13542.5prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO13542.5prime
GAAGTTATCAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCT
CCCCAGCGCCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCG
CTGGAGGATGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTC
CAAGTTCGGGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGA
GTGACAAGTGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACC
ACGGATACAGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCT
CAGCGACTACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGG
AGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTT
GTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGA
TACGAGCAAGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAA
AGGGCAAGGGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATAT
GTGAGTGGCTACCAGCACAAGGACACCTACGACAATGCCCACGCAAGCTT
TCTAGACC

BO13542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4893-PA 579 CG4893-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 1169 CG45057-RB 151..727 16..592 2885 100 Plus
CG45057-RD 869 CG45057-RD 137..713 16..592 2885 100 Plus
CG45057-RC 840 CG45057-RC 108..684 16..592 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16355633..16356030 413..16 1990 100 Minus
3L 28110227 3L 16355188..16355372 592..408 910 99.5 Minus
Blast to na_te.dros performed 2015-02-13 15:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 83..134 113 71.2 Plus

BO13542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:13 Download gff for BO13542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:01 Download gff for BO13542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:07 Download gff for BO13542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 103..684 12..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:12 Download gff for BO13542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 103..684 12..592 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:12 Download gff for BO13542.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16355188..16355367 413..592 100 <- Minus
3L 16355634..16356042 5..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:07 Download gff for BO13542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16348288..16348467 413..592 100 <- Minus
arm_3L 16348734..16349142 5..412 99   Minus

BO13542.complete Sequence

610 bp assembled on 2006-10-11

GenBank Submission: FJ632821

> BO13542.complete
GAAGTTATCAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCT
CCCCAGCGCCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCG
CTGGAGGATGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTC
CAAGTTCGGGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGA
GTGACAAGTGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACC
ACGGATACAGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCT
CAGCGACTACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGG
AGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTT
GTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGA
TACGAGCAAGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAA
AGGGCAAGGGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATAT
GTGAGTGGCTACCAGCACAAGGACACCTACGACAATGCCCACGCAAGCTT
TCTAGACCAT

BO13542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 579 CG45057-PB 1..576 17..592 2880 100 Plus
CG45057-RD 579 CG45057-PD 1..576 17..592 2880 100 Plus
CG45057-RC 579 CG45057-PC 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 1169 CG45057-RB 151..727 16..592 2885 100 Plus
CG45057-RD 869 CG45057-RD 137..713 16..592 2885 100 Plus
CG45057-RC 840 CG45057-RC 108..684 16..592 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16355633..16356030 413..16 1990 100 Minus
3L 28110227 3L 16355188..16355372 592..408 910 99.5 Minus
Blast to na_te.dros performed 2014-11-27 10:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 83..134 113 71.2 Plus

BO13542.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:59 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:16 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 126..710 7..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:20 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 109..684 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:59 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 126..710 7..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:09 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 109..684 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:09 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16355186..16355367 413..594 98 <- Minus
3L 16355634..16356029 17..412 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:20 Download gff for BO13542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16348286..16348467 413..594 98 <- Minus
arm_3L 16348734..16349129 17..412 100   Minus

BO13542.pep Sequence

Translation from 16 to 610

> BO13542.pep
MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS
KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK
FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT
GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAHASFLDH

BO13542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-PB 192 CG45057-PB 1..192 1..192 977 100 Plus
CG45057-PD 192 CG45057-PD 1..192 1..192 977 100 Plus
CG45057-PC 192 CG45057-PC 1..192 1..192 977 100 Plus
CG45057-PA 192 CG45057-PA 1..192 1..192 977 100 Plus
CG6709-PB 117 CG6709-PB 5..112 30..131 138 31.5 Plus