Clone Sequence Records
BO13542.3prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13542.3prime
ATGGTCTAGAAAGCTTGCGTGGGCATTGTCGTAGGTGTCCTTGTGCTGGT
AGCCACTCACATATCCGGATCCATCGACCACGTTCCGTCTGCCCGCGATA
CCCTTGCCCTTTCCGGAGGCATCGAAACGCTCCTTGTGGGAACCGGTGTA
CTTGCTCGTATCCGTCAATCGATCCACGGCAGCTGCGGCTTTTCCAGCCG
AAACGGACACAACTCCTGGAGCTCCACAACTGGCCAACTTTTGCTTGATC
TCCGACAGCTCCACCTTTTTCGTCTTGGCCAGATCGTCCAGGAATTTGTT
GTAGTCGCTGAGCGAGATCTTCATGGCCTTGAACTTCTTGAAGTGGATGC
CTGTATCCGTGGTGGTGATCTTCTTGTCGATAACTTTGGCCTGTTTCATC
CACTTGTCACTCTGCGACAGCGTTATCAGCTTGCCATCGGACTTGGAGTC
CCCGAACTTGGAGAAGGCCTTGAACTGATCCGAAAAGCTAACCTTGGGCT
CATCCTCCAGCGCCAATTGGGCCAACTCGGTAGCGGGCACCTCAGGAGTT
GGCGCTGGGGAGGGGCTTCCATTTGCTGCAGCTACCTCGGACATGTCGAC
TGATAACT
BO13542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4893-PA | 579 | CG4893-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45057-RB | 1169 | CG45057-RB | 151..727 | 595..19 | 2885 | 100 | Minus |
CG45057-RD | 869 | CG45057-RD | 137..713 | 595..19 | 2885 | 100 | Minus |
CG45057-RC | 840 | CG45057-RC | 108..684 | 595..19 | 2885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16355633..16356030 | 198..595 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 16355188..16355372 | 19..203 | 910 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-02 19:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 6959..7009 | 528..477 | 113 | 71.2 | Minus |
BO13542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:12 Download gff for
BO13542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:59 Download gff for
BO13542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:03 Download gff for
BO13542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-RC | 103..684 | 19..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:24 Download gff for
BO13542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45057-RC | 103..684 | 19..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:24 Download gff for
BO13542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16355188..16355367 | 19..198 | 100 | <- | Plus |
3L | 16355634..16356045 | 199..608 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:03 Download gff for
BO13542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16348288..16348467 | 19..198 | 100 | <- | Plus |
arm_3L | 16348734..16349145 | 199..608 | 98 | | Plus |
BO13542.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13542.5prime
GAAGTTATCAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCT
CCCCAGCGCCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCG
CTGGAGGATGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTC
CAAGTTCGGGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGA
GTGACAAGTGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACC
ACGGATACAGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCT
CAGCGACTACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGG
AGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTT
GTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGA
TACGAGCAAGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAA
AGGGCAAGGGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATAT
GTGAGTGGCTACCAGCACAAGGACACCTACGACAATGCCCACGCAAGCTT
TCTAGACC
BO13542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4893-PA | 579 | CG4893-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45057-RB | 1169 | CG45057-RB | 151..727 | 16..592 | 2885 | 100 | Plus |
CG45057-RD | 869 | CG45057-RD | 137..713 | 16..592 | 2885 | 100 | Plus |
CG45057-RC | 840 | CG45057-RC | 108..684 | 16..592 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16355633..16356030 | 413..16 | 1990 | 100 | Minus |
3L | 28110227 | 3L | 16355188..16355372 | 592..408 | 910 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-13 15:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 6959..7009 | 83..134 | 113 | 71.2 | Plus |
BO13542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:13 Download gff for
BO13542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:01 Download gff for
BO13542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:07 Download gff for
BO13542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-RC | 103..684 | 12..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:12 Download gff for
BO13542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45057-RC | 103..684 | 12..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:12 Download gff for
BO13542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16355188..16355367 | 413..592 | 100 | <- | Minus |
3L | 16355634..16356042 | 5..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:07 Download gff for
BO13542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16348288..16348467 | 413..592 | 100 | <- | Minus |
arm_3L | 16348734..16349142 | 5..412 | 99 | | Minus |
BO13542.complete Sequence
610 bp assembled on 2006-10-11
GenBank Submission: FJ632821
> BO13542.complete
GAAGTTATCAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCT
CCCCAGCGCCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCG
CTGGAGGATGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTC
CAAGTTCGGGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGA
GTGACAAGTGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACC
ACGGATACAGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCT
CAGCGACTACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGG
AGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTT
GTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGA
TACGAGCAAGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAA
AGGGCAAGGGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATAT
GTGAGTGGCTACCAGCACAAGGACACCTACGACAATGCCCACGCAAGCTT
TCTAGACCAT
BO13542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45057-RB | 579 | CG45057-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
CG45057-RD | 579 | CG45057-PD | 1..576 | 17..592 | 2880 | 100 | Plus |
CG45057-RC | 579 | CG45057-PC | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45057-RB | 1169 | CG45057-RB | 151..727 | 16..592 | 2885 | 100 | Plus |
CG45057-RD | 869 | CG45057-RD | 137..713 | 16..592 | 2885 | 100 | Plus |
CG45057-RC | 840 | CG45057-RC | 108..684 | 16..592 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16355633..16356030 | 413..16 | 1990 | 100 | Minus |
3L | 28110227 | 3L | 16355188..16355372 | 592..408 | 910 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-27 10:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 6959..7009 | 83..134 | 113 | 71.2 | Plus |
BO13542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:59 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-RA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:16 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-RA | 126..710 | 7..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:20 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-RC | 109..684 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:59 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4893-RA | 126..710 | 7..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:09 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45057-RC | 109..684 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:09 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16355186..16355367 | 413..594 | 98 | <- | Minus |
3L | 16355634..16356029 | 17..412 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:20 Download gff for
BO13542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16348286..16348467 | 413..594 | 98 | <- | Minus |
arm_3L | 16348734..16349129 | 17..412 | 100 | | Minus |
BO13542.pep Sequence
Translation from 16 to 610
> BO13542.pep
MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS
KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK
FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT
GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAHASFLDH
BO13542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45057-PB | 192 | CG45057-PB | 1..192 | 1..192 | 977 | 100 | Plus |
CG45057-PD | 192 | CG45057-PD | 1..192 | 1..192 | 977 | 100 | Plus |
CG45057-PC | 192 | CG45057-PC | 1..192 | 1..192 | 977 | 100 | Plus |
CG45057-PA | 192 | CG45057-PA | 1..192 | 1..192 | 977 | 100 | Plus |
CG6709-PB | 117 | CG6709-PB | 5..112 | 30..131 | 138 | 31.5 | Plus |