Clone BO13543 Report

Search the DGRC for BO13543

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG7519-RA
Protein status:BO13543.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO13543.3prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO13543.3prime
ATGGTCTAGAAAGCTTGCCTGTTCCTCTTCGGGTACCTTTCTGGCGGGCT
TGTGCTTCTCGTAAGCCTCATCGTTGAGTCCCTCCCGATTCCGGGCAATC
TCGATTGCCAGAAACTGGACGCGAAACACGAAGATAGAGTTGTCCGGGGA
GAATTCCCTGCTGGCATCGGCGCGCATCAGGGTGCCATACGAGTAATCGT
CCAACTTGTTAAACTTCTCGGCGAACTGGCGCCACTTGAGCTTCGCCGTG
GCGGATTTGAGAATATCATCGGTAAGCCGGCCAACGTGAAGATCGGGAAA
ATCCTGCCGGAAAGTGGCGTATATCTGGTCGTCGTAGGGCGTGAGCTTCA
GCTGGGAGGGATGGACGCTGGTGATGAGATTAAAGTGCACCTCGGCGTGT
TCCAGAGCTTTTGCGGCCCACATTTCCTCCACCAGGGTGTCGTTGCCAAA
TTCCTCCGCTGGCCGCGACAGCAGCGACGCTCCATGCATCATCTCCATGT
CGACTGATAACT

BO13543.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-PA 483 CG7519-RA 1..480 498..19 2375 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 710 CG7519-RA 103..582 498..19 2385 99.8 Minus
CG7519-RB 683 CG7519-RB 223..555 351..19 1650 99.7 Minus
CG7519-RB 683 CG7519-RB 103..224 498..377 610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21493420..21493779 378..19 1785 99.7 Minus
3L 28110227 3L 21493247..21493355 487..379 545 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:31:28 has no hits.

BO13543.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:14 Download gff for BO13543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-PA 1..483 15..498 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:02 Download gff for BO13543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-PA 1..483 15..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:31 Download gff for BO13543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..585 15..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:34 Download gff for BO13543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..585 15..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:34 Download gff for BO13543.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21493235..21493355 379..498 96 -> Minus
3L 21493420..21493782 15..378 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:31 Download gff for BO13543.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21486335..21486455 379..498 96 -> Minus
arm_3L 21486520..21486882 15..378 99   Minus

BO13543.5prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO13543.5prime
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGGCAA
GCTTTCTAGACC

BO13543.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-PA 483 CG7519-RA 1..480 17..496 2375 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 710 CG7519-RA 103..582 17..496 2385 99.8 Plus
CG7519-RB 683 CG7519-RB 223..555 164..496 1650 99.7 Plus
CG7519-RB 683 CG7519-RB 103..224 17..138 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21493420..21493779 137..496 1785 99.7 Plus
3L 28110227 3L 21493247..21493355 28..136 545 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:14:38 has no hits.

BO13543.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:15 Download gff for BO13543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-PA 1..483 17..500 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:03 Download gff for BO13543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-PA 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:17 Download gff for BO13543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..585 17..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:06 Download gff for BO13543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..585 17..500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:06 Download gff for BO13543.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21493235..21493355 17..136 96 -> Plus
3L 21493420..21493782 137..500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:17 Download gff for BO13543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21486335..21486455 17..136 96 -> Plus
arm_3L 21486520..21486882 137..500 99   Plus

BO13543.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ632822

> BO13543.complete
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGGCAA
GCTTTCTAGACCAT

BO13543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 483 CG7519-PA 1..480 17..496 2385 99.8 Plus
CG7519-RB 456 CG7519-PB 121..453 164..496 1650 99.7 Plus
CG7519-RB 456 CG7519-PB 1..122 17..138 610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 710 CG7519-RA 103..582 17..496 2385 99.8 Plus
CG7519-RB 683 CG7519-RB 223..555 164..496 1650 99.7 Plus
CG7519-RB 683 CG7519-RB 103..224 17..138 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21493420..21493779 137..496 1785 99.7 Plus
3L 28110227 3L 21493247..21493355 28..136 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:56:59 has no hits.

BO13543.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:00 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:18 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 97..579 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:46 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..582 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:01 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 97..579 17..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:55 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..582 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:55 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21493235..21493355 17..136 96 -> Plus
3L 21493420..21493779 137..498 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:46 Download gff for BO13543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21486335..21486455 17..136 96 -> Plus
arm_3L 21486520..21486879 137..498 99   Plus

BO13543.pep Sequence

Translation from 16 to 514

> BO13543.pep
MEMMHGASLLSRPAEEFGNDTLVEEMWAAKALEHAEVHFNLITSVHPSQL
KLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKLD
DYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNREGLNDEAYEKHK
PARKVPEEEQASFLDH

BO13543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-PA 160 CG7519-PA 1..160 1..160 834 100 Plus
CG7519-PB 151 CG7519-PB 1..151 1..160 769 94.4 Plus