Clone Sequence Records
BO13543.3prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO13543.3prime
ATGGTCTAGAAAGCTTGCCTGTTCCTCTTCGGGTACCTTTCTGGCGGGCT
TGTGCTTCTCGTAAGCCTCATCGTTGAGTCCCTCCCGATTCCGGGCAATC
TCGATTGCCAGAAACTGGACGCGAAACACGAAGATAGAGTTGTCCGGGGA
GAATTCCCTGCTGGCATCGGCGCGCATCAGGGTGCCATACGAGTAATCGT
CCAACTTGTTAAACTTCTCGGCGAACTGGCGCCACTTGAGCTTCGCCGTG
GCGGATTTGAGAATATCATCGGTAAGCCGGCCAACGTGAAGATCGGGAAA
ATCCTGCCGGAAAGTGGCGTATATCTGGTCGTCGTAGGGCGTGAGCTTCA
GCTGGGAGGGATGGACGCTGGTGATGAGATTAAAGTGCACCTCGGCGTGT
TCCAGAGCTTTTGCGGCCCACATTTCCTCCACCAGGGTGTCGTTGCCAAA
TTCCTCCGCTGGCCGCGACAGCAGCGACGCTCCATGCATCATCTCCATGT
CGACTGATAACT
BO13543.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-PA | 483 | CG7519-RA | 1..480 | 498..19 | 2375 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 710 | CG7519-RA | 103..582 | 498..19 | 2385 | 99.8 | Minus |
CG7519-RB | 683 | CG7519-RB | 223..555 | 351..19 | 1650 | 99.7 | Minus |
CG7519-RB | 683 | CG7519-RB | 103..224 | 498..377 | 610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21493420..21493779 | 378..19 | 1785 | 99.7 | Minus |
3L | 28110227 | 3L | 21493247..21493355 | 487..379 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:31:28 has no hits.
BO13543.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:14 Download gff for
BO13543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-PA | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:02 Download gff for
BO13543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-PA | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:31 Download gff for
BO13543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..585 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:34 Download gff for
BO13543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..585 | 15..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:34 Download gff for
BO13543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21493235..21493355 | 379..498 | 96 | -> | Minus |
3L | 21493420..21493782 | 15..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:31 Download gff for
BO13543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21486335..21486455 | 379..498 | 96 | -> | Minus |
arm_3L | 21486520..21486882 | 15..378 | 99 | | Minus |
BO13543.5prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO13543.5prime
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGGCAA
GCTTTCTAGACC
BO13543.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-PA | 483 | CG7519-RA | 1..480 | 17..496 | 2375 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 710 | CG7519-RA | 103..582 | 17..496 | 2385 | 99.8 | Plus |
CG7519-RB | 683 | CG7519-RB | 223..555 | 164..496 | 1650 | 99.7 | Plus |
CG7519-RB | 683 | CG7519-RB | 103..224 | 17..138 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21493420..21493779 | 137..496 | 1785 | 99.7 | Plus |
3L | 28110227 | 3L | 21493247..21493355 | 28..136 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:14:38 has no hits.
BO13543.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:15 Download gff for
BO13543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:03 Download gff for
BO13543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:17 Download gff for
BO13543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..585 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:06 Download gff for
BO13543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..585 | 17..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:06 Download gff for
BO13543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21493235..21493355 | 17..136 | 96 | -> | Plus |
3L | 21493420..21493782 | 137..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:17 Download gff for
BO13543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21486335..21486455 | 17..136 | 96 | -> | Plus |
arm_3L | 21486520..21486882 | 137..500 | 99 | | Plus |
BO13543.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ632822
> BO13543.complete
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGGCAA
GCTTTCTAGACCAT
BO13543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 483 | CG7519-PA | 1..480 | 17..496 | 2385 | 99.8 | Plus |
CG7519-RB | 456 | CG7519-PB | 121..453 | 164..496 | 1650 | 99.7 | Plus |
CG7519-RB | 456 | CG7519-PB | 1..122 | 17..138 | 610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 710 | CG7519-RA | 103..582 | 17..496 | 2385 | 99.8 | Plus |
CG7519-RB | 683 | CG7519-RB | 223..555 | 164..496 | 1650 | 99.7 | Plus |
CG7519-RB | 683 | CG7519-RB | 103..224 | 17..138 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21493420..21493779 | 137..496 | 1785 | 99.7 | Plus |
3L | 28110227 | 3L | 21493247..21493355 | 28..136 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:59 has no hits.
BO13543.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:00 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:18 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 97..579 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:46 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..582 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:01 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 97..579 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:55 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..582 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:55 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21493235..21493355 | 17..136 | 96 | -> | Plus |
3L | 21493420..21493779 | 137..498 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:46 Download gff for
BO13543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21486335..21486455 | 17..136 | 96 | -> | Plus |
arm_3L | 21486520..21486879 | 137..498 | 99 | | Plus |
BO13543.pep Sequence
Translation from 16 to 514
> BO13543.pep
MEMMHGASLLSRPAEEFGNDTLVEEMWAAKALEHAEVHFNLITSVHPSQL
KLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKLD
DYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNREGLNDEAYEKHK
PARKVPEEEQASFLDH
BO13543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-PA | 160 | CG7519-PA | 1..160 | 1..160 | 834 | 100 | Plus |
CG7519-PB | 151 | CG7519-PB | 1..151 | 1..160 | 769 | 94.4 | Plus |