Clone Sequence Records
BO13545.3prime Sequence
896 bp (748 high quality bases) assembled on 2006-05-08
> BO13545.3prime
ATGGTCTAGAAAGCTTGCGACGCGACGGAAGACCGAAGATGGCAGGTAGG
AGTTGTCGGGGCTCTGGGCGGCGGCCTGACGCACTGGAGCGGCGGAAGCG
AAGTTCAGGACGGGGGCAACACCACCGTTGTGGGCCTGGCTGGATCCTCC
CAGCTGGTCGTACTGACCCTGGATGGCGCGCTGGGCGTTGGCAGCGTCCT
CGGGAGTGCGGTACTTGACGAAGTGCACCTCGGGCTTGTTGTTGTTGTTG
CTGCGGATGGCGTTCAGCTTGTTGGCCAGATCTCCAATATCGGCCTGCTT
GTTCAGGACATAGATGGCGGTCTCCTGCTGGGCAGCCTGCTTGGCGAGGG
CCAGGGCGGCGTTCTCCAGGCCACGGTTCTCGGGTCCCTTGATGAAGACA
ACGCGCAGGGCCTTGTTCAGGGCAGAGGACACACGCTCCAGCTGCTGGGG
CTCATCGAAGTCCTGCTCGTTGGCGGTGAAGGTGAAGAACTCCTTCTCCA
GCTCGGCGGTTGGGGCAGGGGCGTTGTAGGAGACGGGGGCACTGAGGGCG
TCACCACCACCAATGCTTCCGATGCTGCCAATGCTTCCACCACCAATGCT
GCTCAGACCACCCAGACCGGCACCGCTTCCGATGCTGGCTCCAATGGAAC
CACCACCAATGGATCCTCCGATGCTGCCGCCTCCGATGCTGCCGCCTCCG
ATGCTGCCGCCTCCGATGCTGCCTCCTCCGATGCTGCCTCCTCCGATGGA
GCCACCTCCAATGCTGCCACTTCCAGGAGCAAAGGACAGTCCGGAGCTGG
AGTGTCCCACGGGCTGGTAGTTGTAGCCGAGCTTATCGGCGCAGGCGACT
GCCACCAAGCACATAACAATGAAGGCACGCATGTCGACTGATAACT
BO13545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5468-PA | 867 | CG5468-RA | 1..864 | 882..19 | 4320 | 100 | Minus |
| CG6478-PA | 861 | CG6478-RA | 463..729 | 408..142 | 1110 | 96.6 | Minus |
| CG6447-PA | 858 | CG6447-RA | 463..702 | 408..169 | 950 | 95.8 | Minus |
| CG6447-PB | 840 | CG6447-RB | 445..684 | 408..169 | 950 | 95.8 | Minus |
| CG5476-PA | 930 | CG5476-RA | 535..765 | 399..169 | 930 | 96.1 | Minus |
| CG6460-PA | 744 | CG6460-RA | 346..611 | 405..140 | 830 | 92.4 | Minus |
| CG5471-PA | 924 | CG5471-RA | 454..678 | 405..181 | 800 | 94.2 | Minus |
| CG6447-PA | 858 | CG6447-RA | 1..143 | 882..740 | 565 | 95.8 | Minus |
| CG6447-PB | 840 | CG6447-RB | 1..125 | 864..740 | 550 | 97.6 | Minus |
| CG31080-PA | 726 | CG31080-RA | 391..530 | 345..206 | 425 | 92.1 | Minus |
| CG6452-PA | 690 | CG6452-RA | 268..399 | 405..274 | 410 | 92.4 | Minus |
| CG6478-PA | 861 | CG6478-RA | 25..110 | 858..773 | 330 | 95.3 | Minus |
| CG5476-PA | 930 | CG5476-RA | 35..110 | 848..773 | 230 | 92.1 | Minus |
| CG5480-PA | 852 | CG5480-RA | 394..460 | 369..303 | 210 | 92.5 | Minus |
| CG6447-PA | 858 | CG6447-RA | 374..422 | 497..449 | 195 | 95.9 | Minus |
| CG6447-PB | 840 | CG6447-RB | 356..404 | 497..449 | 195 | 95.9 | Minus |
| CG5476-PA | 930 | CG5476-RA | 437..488 | 497..446 | 185 | 94.2 | Minus |
| CG31080-PA | 726 | CG31080-RA | 317..377 | 419..359 | 180 | 91.8 | Minus |
| CG6478-PA | 861 | CG6478-RA | 374..422 | 497..449 | 170 | 93.8 | Minus |
| CG6452-PA | 690 | CG6452-RA | 442..504 | 231..169 | 165 | 90.4 | Minus |
| CG14243-PA | 771 | CG14243-RA | 505..539 | 231..197 | 150 | 97.1 | Minus |
| CG14240-PA | 663 | CG14240-RA | 423..456 | 244..211 | 145 | 97 | Minus |
| CG14243-PA | 771 | CG14243-RA | 391..428 | 345..308 | 140 | 94.7 | Minus |
| CG14250-PA | 738 | CG14250-RA | 486..518 | 238..206 | 140 | 96.9 | Minus |
| CG6447-PA | 858 | CG6447-RA | 733..779 | 138..92 | 135 | 91.4 | Minus |
| CG6447-PB | 840 | CG6447-RB | 715..761 | 138..92 | 135 | 91.4 | Minus |
| CG5476-PA | 930 | CG5476-RA | 847..893 | 87..41 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlM-RA | 1030 | CG5468-RA | 50..913 | 882..19 | 4320 | 100 | Minus |
| TwdlL-RA | 1002 | CG6447-RA | 51..898 | 882..23 | 1975 | 82.5 | Minus |
| TwdlL-RB | 1066 | CG6447-RB | 133..962 | 864..23 | 1930 | 82.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26619259..26620107 | 867..19 | 4245 | 100 | Minus |
| 3R | 32079331 | 3R | 26622581..26623092 | 23..534 | 1630 | 87.9 | Plus |
| 3R | 32079331 | 3R | 26632324..26632832 | 540..32 | 1570 | 87.2 | Minus |
| 3R | 32079331 | 3R | 26624691..26625202 | 23..534 | 1540 | 86.7 | Plus |
| 3R | 32079331 | 3R | 26628051..26628380 | 94..423 | 1140 | 89.7 | Plus |
| 3R | 32079331 | 3R | 26630292..26630621 | 423..94 | 1080 | 88.5 | Minus |
| 3R | 32079331 | 3R | 26634085..26634494 | 507..98 | 910 | 81.5 | Minus |
| 3R | 32079331 | 3R | 26626107..26626444 | 82..419 | 820 | 82.8 | Plus |
| 3R | 32079331 | 3R | 26625294..26625520 | 641..864 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620780..26621063 | 122..405 | 445 | 77.1 | Plus |
| 3R | 32079331 | 3R | 26623210..26623409 | 664..863 | 445 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26631931..26632040 | 882..773 | 340 | 87.3 | Minus |
| 3R | 32079331 | 3R | 26656932..26657251 | 420..101 | 340 | 73.8 | Minus |
| 3R | 32079331 | 3R | 26640530..26640720 | 345..155 | 295 | 77 | Minus |
Blast to na_te.dros performed 2015-02-06 12:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2432 | 274..236 | 123 | 79.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2827 | 274..237 | 109 | 76.3 | Minus |
BO13545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:18 Download gff for
BO13545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5468-PA | 1..867 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:08 Download gff for
BO13545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5468-PA | 1..867 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:11 Download gff for
BO13545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 40..922 | 8..893 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:59 Download gff for
BO13545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 40..922 | 8..893 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:59 Download gff for
BO13545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26619259..26620116 | 8..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:11 Download gff for
BO13545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22444981..22445838 | 8..867 | 99 | | Minus |
BO13545.5prime Sequence
879 bp (801 high quality bases) assembled on 2006-05-08
> BO13545.5prime
GAAGTTATCAGTCGACATGCGTGCCTTCATTGTTATGTGCTTGGTGGCAG
TCGCCTGCGCCGATAAGCTCGGCTACAACTACCAGCCCGTGGGACACTCC
AGCTCCGGACTGTCCTTTGCTCCTGGAAGTGGCAGCATTGGAGGTGGCTC
CATCGGAGGAGGCAGCATCGGAGGAGGCAGCATCGGAGGCGGCAGCATCG
GAGGCGGCAGCATCGGAGGCGGCAGCATCGGAGGATCCATTGGTGGTGGT
TCCATTGGAGCCAGCATCGGAAGCGGTGCCGGTCTGGGTGGTCTGAGCAG
CATTGGTGGTGGAAGCATTGGCAGCATCGGAAGCATTGGTGGTGGTGACG
CCCTCAGTGCCCCCGTCTCCTACAACGCCCCTGCCCCAACCGCCGAGCTG
GAGAAGGAGTTCTTCACCTTCACCGCCAACGAGCAGGACTTCGATGAGCC
CCAGCAGCTGGAGCGTGTGTCCTCTGCCCTGAACAAGGCCCTGCGCGTTG
TCTTCATCAAGGGACCCGAGAACCGTGGCCTGGAGAACGCCGCCCTGGCC
CTCGCCAAGCAGGCTGCCCAGCAGGAGACCGCCATCTATGTCCTGAACAA
GCAGGCCGATATTGGAGATCTGGCCAACAAGCTGAACGCCATCCGCAGCA
ACAACAACAACAAGCCCGAGGTGCACTTCGTCAAGTACCGCACTCCCGAG
GACGCTGCCAACGCCCAGCGCGCCATCCAGGGTCAGTACGACCAGCTGGG
AGGATCCAGCCAGGCCCACAACGGTGGTGTTGCCCCCGTCCTGAACTTCG
CTTCCGCCGCTCCAGTGCGTCAGGCCGCCGCCCAGAGCCCCGACAACTCC
TACCTGCCATCTTCGGTCTTCCGTCGCGT
BO13545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5468-PA | 867 | CG5468-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
| CG6478-PA | 861 | CG6478-RA | 463..729 | 491..757 | 1110 | 96.6 | Plus |
| CG6447-PA | 858 | CG6447-RA | 463..702 | 491..730 | 950 | 95.8 | Plus |
| CG6447-PB | 840 | CG6447-RB | 445..684 | 491..730 | 950 | 95.8 | Plus |
| CG5476-PA | 930 | CG5476-RA | 535..765 | 500..730 | 930 | 96.1 | Plus |
| CG6460-PA | 744 | CG6460-RA | 346..611 | 494..759 | 830 | 92.4 | Plus |
| CG5471-PA | 924 | CG5471-RA | 454..678 | 494..718 | 800 | 94.2 | Plus |
| CG6447-PA | 858 | CG6447-RA | 1..143 | 17..159 | 565 | 95.8 | Plus |
| CG6447-PB | 840 | CG6447-RB | 1..125 | 35..159 | 550 | 97.6 | Plus |
| CG31080-PA | 726 | CG31080-RA | 391..530 | 554..693 | 425 | 92.1 | Plus |
| CG6452-PA | 690 | CG6452-RA | 268..399 | 494..625 | 410 | 92.4 | Plus |
| CG6478-PA | 861 | CG6478-RA | 25..110 | 41..126 | 330 | 95.3 | Plus |
| CG5476-PA | 930 | CG5476-RA | 35..110 | 51..126 | 230 | 92.1 | Plus |
| CG5480-PA | 852 | CG5480-RA | 394..460 | 530..596 | 210 | 92.5 | Plus |
| CG6447-PA | 858 | CG6447-RA | 374..422 | 402..450 | 195 | 95.9 | Plus |
| CG6447-PB | 840 | CG6447-RB | 356..404 | 402..450 | 195 | 95.9 | Plus |
| CG5476-PA | 930 | CG5476-RA | 437..488 | 402..453 | 185 | 94.2 | Plus |
| CG31080-PA | 726 | CG31080-RA | 317..377 | 480..540 | 180 | 91.8 | Plus |
| CG6478-PA | 861 | CG6478-RA | 374..422 | 402..450 | 170 | 93.8 | Plus |
| CG6452-PA | 690 | CG6452-RA | 442..504 | 668..730 | 165 | 90.4 | Plus |
| CG14243-PA | 771 | CG14243-RA | 505..539 | 668..702 | 150 | 97.1 | Plus |
| CG14240-PA | 663 | CG14240-RA | 423..456 | 655..688 | 145 | 97 | Plus |
| CG14243-PA | 771 | CG14243-RA | 391..428 | 554..591 | 140 | 94.7 | Plus |
| CG14250-PA | 738 | CG14250-RA | 486..518 | 661..693 | 140 | 96.9 | Plus |
| CG6447-PA | 858 | CG6447-RA | 733..779 | 761..807 | 135 | 91.4 | Plus |
| CG6447-PB | 840 | CG6447-RB | 715..761 | 761..807 | 135 | 91.4 | Plus |
| CG5476-PA | 930 | CG5476-RA | 847..893 | 812..858 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlM-RA | 1030 | CG5468-RA | 50..912 | 17..879 | 4315 | 100 | Plus |
| TwdlL-RA | 1002 | CG6447-RA | 51..898 | 17..876 | 1975 | 82.5 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..962 | 35..876 | 1930 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26619259..26620106 | 32..879 | 4240 | 100 | Plus |
| 3R | 32079331 | 3R | 26622581..26623092 | 876..365 | 1630 | 87.9 | Minus |
| 3R | 32079331 | 3R | 26632324..26632832 | 359..867 | 1570 | 87.2 | Plus |
| 3R | 32079331 | 3R | 26624691..26625202 | 876..365 | 1540 | 86.7 | Minus |
| 3R | 32079331 | 3R | 26628051..26628380 | 805..476 | 1140 | 89.7 | Minus |
| 3R | 32079331 | 3R | 26630292..26630621 | 476..805 | 1080 | 88.5 | Plus |
| 3R | 32079331 | 3R | 26634085..26634494 | 392..801 | 910 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26626107..26626444 | 817..480 | 820 | 82.8 | Minus |
| 3R | 32079331 | 3R | 26625294..26625520 | 258..35 | 620 | 85.9 | Minus |
| 3R | 32079331 | 3R | 26620780..26621063 | 777..494 | 445 | 77.1 | Minus |
| 3R | 32079331 | 3R | 26623210..26623409 | 235..36 | 445 | 81.5 | Minus |
| 3R | 32079331 | 3R | 26631931..26632040 | 17..126 | 340 | 87.3 | Plus |
| 3R | 32079331 | 3R | 26656932..26657251 | 479..798 | 340 | 73.8 | Plus |
| 3R | 32079331 | 3R | 26640530..26640720 | 554..744 | 295 | 77 | Plus |
Blast to na_te.dros performed 2015-02-11 12:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2432 | 625..663 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2827 | 625..662 | 109 | 76.3 | Plus |
BO13545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:19 Download gff for
BO13545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5468-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:08 Download gff for
BO13545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5468-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:57 Download gff for
BO13545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 40..912 | 6..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:18 Download gff for
BO13545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 40..912 | 6..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:18 Download gff for
BO13545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26619259..26620106 | 32..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:57 Download gff for
BO13545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22444981..22445828 | 32..879 | 100 | | Plus |
BO13545.complete Sequence
898 bp assembled on 2006-10-11
GenBank Submission: FJ632823
> BO13545.complete
GAAGTTATCAGTCGACATGCGTGCCTTCATTGTTATGTGCTTGGTGGCAG
TCGCCTGCGCCGATAAGCTCGGCTACAACTACCAGCCCGTGGGACACTCC
AGCTCCGGACTGTCCTTTGCTCCTGGAAGTGGCAGCATTGGAGGTGGCTC
CATCGGAGGAGGCAGCATCGGAGGAGGCAGCATCGGAGGCGGCAGCATCG
GAGGCGGCAGCATCGGAGGCGGCAGCATCGGAGGATCCATTGGTGGTGGT
TCCATTGGAGCCAGCATCGGAAGCGGTGCCGGTCTGGGTGGTCTGAGCAG
CATTGGTGGTGGAAGCATTGGCAGCATCGGAAGCATTGGTGGTGGTGACG
CCCTCAGTGCCCCCGTCTCCTACAACGCCCCTGCCCCAACCGCCGAGCTG
GAGAAGGAGTTCTTCACCTTCACCGCCAACGAGCAGGACTTCGATGAGCC
CCAGCAGCTGGAGCGTGTGTCCTCTGCCCTGAACAAGGCCCTGCGCGTTG
TCTTCATCAAGGGACCCGAGAACCGTGGCCTGGAGAACGCCGCCCTGGCC
CTCGCCAAGCAGGCTGCCCAGCAGGAGACCGCCATCTATGTCCTGAACAA
GCAGGCCGATATTGGAGATCTGGCCAACAAGCTGAACGCCATCCGCAGCA
ACAACAACAACAAGCCCGAGGTGCACTTCGTCAAGTACCGCACTCCCGAG
GACGCTGCCAACGCCCAGCGCGCCATCCAGGGTCAGTACGACCAGCTGGG
AGGATCCAGCCAGGCCCACAACGGTGGTGTTGCCCCCGTCCTGAACTTCG
CTTCCGCCGCTCCAGTGCGTCAGGCCGCCGCCCAGAGCCCCGACAACTCC
TACCTGCCATCTTCGGTCTTCCGTCGCGTCGCAAGCTTTCTAGACCAT
BO13545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlM-RA | 867 | CG5468-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
| TwdlB-RA | 861 | CG6478-PA | 337..848 | 365..876 | 1630 | 87.9 | Plus |
| TwdlN-RA | 930 | CG5476-PA | 394..902 | 359..867 | 1570 | 87.2 | Plus |
| TwdlB-RA | 861 | CG6478-PA | 1..219 | 17..235 | 480 | 81.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlM-RA | 1030 | CG5468-RA | 50..913 | 17..880 | 4320 | 100 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 384..895 | 365..876 | 1630 | 87.9 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 456..964 | 359..867 | 1570 | 87.2 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 48..266 | 17..235 | 480 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26619259..26620107 | 32..880 | 4245 | 100 | Plus |
| 3R | 32079331 | 3R | 26622581..26623092 | 876..365 | 1630 | 87.9 | Minus |
| 3R | 32079331 | 3R | 26632324..26632832 | 359..867 | 1570 | 87.2 | Plus |
| 3R | 32079331 | 3R | 26624691..26625202 | 876..365 | 1540 | 86.7 | Minus |
| 3R | 32079331 | 3R | 26628051..26628380 | 805..476 | 1140 | 89.7 | Minus |
| 3R | 32079331 | 3R | 26630292..26630621 | 476..805 | 1080 | 88.5 | Plus |
| 3R | 32079331 | 3R | 26634085..26634494 | 392..801 | 910 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26626107..26626444 | 817..480 | 820 | 82.8 | Minus |
| 3R | 32079331 | 3R | 26625294..26625520 | 258..35 | 620 | 85.9 | Minus |
| 3R | 32079331 | 3R | 26620780..26621063 | 777..494 | 445 | 77.1 | Minus |
| 3R | 32079331 | 3R | 26623210..26623409 | 235..36 | 445 | 81.5 | Minus |
| 3R | 32079331 | 3R | 26631931..26632040 | 17..126 | 340 | 87.3 | Plus |
| 3R | 32079331 | 3R | 26656932..26657251 | 479..798 | 340 | 73.8 | Plus |
| 3R | 32079331 | 3R | 26640530..26640720 | 554..744 | 295 | 77 | Plus |
Blast to na_te.dros performed 2014-11-27 20:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2432 | 625..663 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2827 | 625..662 | 109 | 76.3 | Plus |
BO13545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:02 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:20 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 35..917 | 6..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:22 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 50..913 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:02 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 35..917 | 6..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:48 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlM-RA | 50..913 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:48 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26619259..26620107 | 32..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:22 Download gff for
BO13545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22444981..22445829 | 32..882 | 99 | | Plus |
BO13545.pep Sequence
Translation from 16 to 898
> BO13545.pep
MRAFIVMCLVAVACADKLGYNYQPVGHSSSGLSFAPGSGSIGGGSIGGGS
IGGGSIGGGSIGGGSIGGGSIGGSIGGGSIGASIGSGAGLGGLSSIGGGS
IGSIGSIGGGDALSAPVSYNAPAPTAELEKEFFTFTANEQDFDEPQQLER
VSSALNKALRVVFIKGPENRGLENAALALAKQAAQQETAIYVLNKQADIG
DLANKLNAIRSNNNNKPEVHFVKYRTPEDAANAQRAIQGQYDQLGGSSQA
HNGGVAPVLNFASAAPVRQAAAQSPDNSYLPSSVFRRVASFLDH
BO13545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlM-PA | 288 | CG5468-PA | 1..288 | 1..288 | 1458 | 100 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 1..283 | 1..287 | 1249 | 84.7 | Plus |
| TwdlB-PA | 286 | CG6478-PA | 1..284 | 1..288 | 1243 | 84.1 | Plus |
| TwdlL-PB | 279 | CG6447-PB | 1..277 | 7..287 | 1221 | 84.4 | Plus |
| TwdlN-PA | 309 | CG5476-PA | 1..305 | 1..288 | 1061 | 74.3 | Plus |
