Clone BO13547 Report

Search the DGRC for BO13547

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptDbp80-RA
Protein status:BO13547.pep:
Sequenced Size:898

Clone Sequence Records

BO13547.3prime Sequence

890 bp (815 high quality bases) assembled on 2006-05-08

> BO13547.3prime
ATGGTCTAGAAAGCTTGCTTTTTGCTGCAAGCCAAGCAGCAGTTCTTTTT
GTCTTATTATTGTGGGATCTGCAACAATCAGCCGAGCAAAGTCCATAACC
TCTTTACCATAAGTAGCAGAGAAAAACAACATTTGGCAATGTGGATTCAG
CATTTTGTGTATTCGAATGCATTGATCATGATGACCTTGGGTGGCTATCA
TTACATCTGCTTCATCCAATACAAAAACGGATATTTTCTTCATATCAAAT
AAACGAAATTTTATTCCCCAATCCAAAAGTTTTCCTGGGGTGCCAATCAA
AATGTGTTCTTCAATTTTTTTACTGCGATCAACCTCTTCTCCGCGTACTG
CAAATCTTAGCTTTATTTCCCGACAAAATTGTCCCATTCGCGCAGCCACT
TCTCCAGTTTGAATTGCCAACTCGTACGTAGGGGATAAACACAGAACCTG
AGGATGATTTAAACAAACGTTGACTCGGCTAAGCATGGCCAATACAAATG
CGGCTGTTTTGCCTGTCCCAGACTGGCTTTGTGCTATCATATTTTGCGGT
GGATCTGCGAGAAGAGTTGGCAACGCTGTTTCTTGAATTTTTGATGGAGT
ATTAAACCCCATTGCGTAAATTCCCTTTAACAGAGATGCTTTTAGGTGTA
AGGCTTCAAATGTTTTCACGGAATGTAAGGGTGAATTCGGATTTTTTTGT
TGAATGTCGAGAGATAGCTTTGTGTTCACCAGCCCCTTTCCTAGTATTTT
TATGAGGAGACTTGTTTCAGCTGGATCAGCGACGTCGAAATCGGTTTCTT
CTCCAGATTTAGAGTCTAGGTTAAGTTTGTCGACCAGCTTAGAAACCTCC
TGGTCCTCTGCTTTTTTAGCCCAATCACCCATGTCGACTG

BO13547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:06:25 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dbp80-RG 1564 CG17023-RG 58..890 884..52 4165 100 Minus
Dbp80-RE 1505 CG17023-RE 58..890 884..52 4165 100 Minus
Dbp80-RD 1203 CG17023-RD 58..890 884..52 4165 100 Minus
Dbp80-RG 1564 CG17023-RG 1134..1169 54..19 180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27293076..27293273 643..446 990 100 Minus
3L 28110227 3L 27332168..27332346 333..155 895 100 Minus
3L 28110227 3L 27292882..27293013 775..644 660 100 Minus
3L 28110227 3L 27331992..27332108 449..333 585 100 Minus
3L 28110227 3L 27350220..27350321 154..53 510 100 Minus
3L 28110227 3L 27279480..27279539 835..776 300 100 Minus
3L 28110227 3L 27279373..27279424 884..833 260 100 Minus
Blast to na_te.dros performed 2015-02-03 07:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 1326..1385 253..194 111 65 Minus

BO13547.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:06 Download gff for BO13547.3prime
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RE 58..890 51..884 99 <- Minus
Dbp80-RE 1028..1059 19..50 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:29 Download gff for BO13547.3prime
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RD 58..890 52..884 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:29 Download gff for BO13547.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 27279373..27279422 835..884 100 -> Minus
3L 27279481..27279539 776..834 100 -> Minus
3L 27292882..27293013 644..775 100 -> Minus
3L 27293076..27293271 448..643 100 -> Minus
3L 27331994..27332108 333..447 100 -> Minus
3L 27332169..27332346 155..332 100 -> Minus
3L 27350220..27350321 53..154 100 -> Minus
3L 27420679..27420712 19..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:06 Download gff for BO13547.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2473205..2473306 53..154 100 -> Minus
3LHet 2543666..2543699 19..52 100   Minus
3LHet 2409909..2409958 835..884 100 -> Minus
3LHet 2410017..2410075 776..834 100 -> Minus
3LHet 2423418..2423549 644..775 100 -> Minus
3LHet 2423612..2423807 448..643 100 -> Minus
3LHet 2454979..2455093 333..447 100 -> Minus
3LHet 2455154..2455331 155..332 100 -> Minus

BO13547.5prime Sequence

794 bp (792 high quality bases) assembled on 2006-05-08

> BO13547.5prime
GAAGTTATCAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGG
AGGTTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAA
GAAACCGATTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAA
AATACTAGGAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAAC
AAAAAAATCCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTA
CACCTAAAAGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATAC
TCCATCAAAAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCAC
CGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCA
TTTGTATTGGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCA
GGTTCTGTGTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAG
TGGCTGCGCGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCA
GTACGCGGAGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTT
GATTGGCACCCCAGGAAAACTTTTGGATTGGGGAATAAAATTTCGTTTAT
TTGATATGAAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATG
ATAGCCACCCAAGGTCATCATGATCAATGCATTCGAATACACAAAATGCT
GAATCCACATTGCCAAATGTTGTTTTTCTCTGCTACTTATGGTA

BO13547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:06:26 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dbp80-RG 1564 CG17023-RG 58..837 15..794 3900 100 Plus
Dbp80-RE 1505 CG17023-RE 58..837 15..794 3900 100 Plus
Dbp80-RD 1203 CG17023-RD 58..837 15..794 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27293076..27293273 256..453 990 100 Plus
3L 28110227 3L 27332168..27332346 566..744 895 100 Plus
3L 28110227 3L 27292882..27293013 124..255 660 100 Plus
3L 28110227 3L 27331992..27332108 450..566 585 100 Plus
3L 28110227 3L 27279480..27279539 64..123 300 100 Plus
3L 28110227 3L 27279373..27279424 15..66 260 100 Plus
3L 28110227 3L 27350220..27350269 745..794 250 100 Plus
Blast to na_te.dros performed 2015-02-12 06:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 1326..1385 646..705 111 65 Plus

BO13547.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:18 Download gff for BO13547.5prime
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RE 58..836 15..793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:09 Download gff for BO13547.5prime
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RD 58..836 15..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:09 Download gff for BO13547.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 27279373..27279422 15..64 100 -> Plus
3L 27279481..27279539 65..123 100 -> Plus
3L 27292882..27293013 124..255 100 -> Plus
3L 27293076..27293271 256..451 100 -> Plus
3L 27331994..27332108 452..566 100 -> Plus
3L 27332169..27332346 567..744 100 -> Plus
3L 27350220..27350268 745..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:18 Download gff for BO13547.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2409909..2409958 15..64 100 -> Plus
3LHet 2410017..2410075 65..123 100 -> Plus
3LHet 2423418..2423549 124..255 100 -> Plus
3LHet 2423612..2423807 256..451 100 -> Plus
3LHet 2454979..2455093 452..566 100 -> Plus
3LHet 2455154..2455331 567..744 100 -> Plus
3LHet 2473205..2473253 745..793 100   Plus

BO13547.complete Sequence

898 bp assembled on 2006-10-11

GenBank Submission: FJ632824

> BO13547.complete
GAAGTTATCAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGG
AGGTTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAA
GAAACCGATTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAA
AATACTAGGAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAAC
AAAAAAATCCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTA
CACCTAAAAGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATAC
TCCATCAAAAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCAC
CGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCA
TTTGTATTGGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCA
GGTTCTGTGTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAG
TGGCTGCGCGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCA
GTACGCGGAGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTT
GATTGGCACCCCAGGAAAACTTTTGGATTGGGGAATAAAATTTCGTTTAT
TTGATATGAAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATG
ATAGCCACCCAAGGTCATCATGATCAATGCATTCGAATACACAAAATGCT
GAATCCACATTGCCAAATGTTGTTTTTCTCTGCTACTTATGGTAAAGAGG
TTATGGACTTTGCTCGGCTGATTGTTGCAGATCCCACAATAATAAGACAA
AAAGAACTGCTGCTTGGCTTGCAGCAAAAAGCAAGCTTTCTAGACCAT

BO13547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbp80-RG 1065 CG17023-PG 1..831 17..847 4155 100 Plus
Dbp80-RE 1446 CG17023-PE 1..831 17..847 4155 100 Plus
Dbp80-RD 840 CG17023-PD 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dbp80-RG 1564 CG17023-RG 58..890 15..847 4165 100 Plus
Dbp80-RE 1505 CG17023-RE 58..890 15..847 4165 100 Plus
Dbp80-RD 1203 CG17023-RD 58..890 15..847 4165 100 Plus
Dbp80-RG 1564 CG17023-RG 1134..1169 845..880 180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27293076..27293273 256..453 990 100 Plus
3L 28110227 3L 27332168..27332346 566..744 895 100 Plus
3L 28110227 3L 27292882..27293013 124..255 660 100 Plus
3L 28110227 3L 27331992..27332108 450..566 585 100 Plus
3L 28110227 3L 27350220..27350321 745..846 510 100 Plus
3L 28110227 3L 27279480..27279539 64..123 300 100 Plus
3L 28110227 3L 27279373..27279424 15..66 260 100 Plus
Blast to na_te.dros performed 2014-11-27 13:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 1326..1385 646..705 111 65 Plus

BO13547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:03 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:01 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RA 70..928 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:40 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RE 60..890 17..848 99 <- Plus
Dbp80-RE 1028..1054 849..875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:04 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RA 68..933 15..880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:17 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
Dbp80-RD 60..890 17..847 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:17 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27293076..27293271 256..451 100 -> Plus
3L 27331994..27332108 452..566 100 -> Plus
3L 27332169..27332346 567..744 100 -> Plus
3L 27350220..27350321 745..846 100 -> Plus
3L 27420679..27420707 847..875 100   Plus
3L 27279375..27279422 17..64 100 -> Plus
3L 27279481..27279539 65..123 100 -> Plus
3L 27292882..27293013 124..255 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:40 Download gff for BO13547.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 2454979..2455093 452..566 100 -> Plus
3LHet 2409911..2409958 17..64 100 -> Plus
3LHet 2410017..2410075 65..123 100 -> Plus
3LHet 2423418..2423549 124..255 100 -> Plus
3LHet 2423612..2423807 256..451 100 -> Plus
3LHet 2455154..2455331 567..744 100 -> Plus
3LHet 2473205..2473306 745..846 100 -> Plus
3LHet 2543666..2543694 847..875 100   Plus

BO13547.pep Sequence

Translation from 16 to 898

> BO13547.pep
MGDWAKKAEDQEVSKLVDKLNLDSKSGEETDFDVADPAETSLLIKILGKG
LVNTKLSLDIQQKNPNSPLHSVKTFEALHLKASLLKGIYAMGFNTPSKIQ
ETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLS
PTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKIEEHILIGTPG
KLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQ
MLFFSATYGKEVMDFARLIVADPTIIRQKELLLGLQQKASFLDH

BO13547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dbp80-PG 354 CG17023-PG 1..290 1..287 1420 96.6 Plus
Dbp80-PB 447 CG17023-PB 1..290 1..287 1420 96.6 Plus
Dbp80-PE 481 CG17023-PE 1..290 1..287 1420 96.6 Plus
Dbp80-PD 279 CG17023-PD 1..277 1..277 1419 100 Plus
Dbp80-PF 316 CG17023-PF 1..125 166..287 589 92 Plus