Clone Sequence Records
BO13547.3prime Sequence
890 bp (815 high quality bases) assembled on 2006-05-08
> BO13547.3prime
ATGGTCTAGAAAGCTTGCTTTTTGCTGCAAGCCAAGCAGCAGTTCTTTTT
GTCTTATTATTGTGGGATCTGCAACAATCAGCCGAGCAAAGTCCATAACC
TCTTTACCATAAGTAGCAGAGAAAAACAACATTTGGCAATGTGGATTCAG
CATTTTGTGTATTCGAATGCATTGATCATGATGACCTTGGGTGGCTATCA
TTACATCTGCTTCATCCAATACAAAAACGGATATTTTCTTCATATCAAAT
AAACGAAATTTTATTCCCCAATCCAAAAGTTTTCCTGGGGTGCCAATCAA
AATGTGTTCTTCAATTTTTTTACTGCGATCAACCTCTTCTCCGCGTACTG
CAAATCTTAGCTTTATTTCCCGACAAAATTGTCCCATTCGCGCAGCCACT
TCTCCAGTTTGAATTGCCAACTCGTACGTAGGGGATAAACACAGAACCTG
AGGATGATTTAAACAAACGTTGACTCGGCTAAGCATGGCCAATACAAATG
CGGCTGTTTTGCCTGTCCCAGACTGGCTTTGTGCTATCATATTTTGCGGT
GGATCTGCGAGAAGAGTTGGCAACGCTGTTTCTTGAATTTTTGATGGAGT
ATTAAACCCCATTGCGTAAATTCCCTTTAACAGAGATGCTTTTAGGTGTA
AGGCTTCAAATGTTTTCACGGAATGTAAGGGTGAATTCGGATTTTTTTGT
TGAATGTCGAGAGATAGCTTTGTGTTCACCAGCCCCTTTCCTAGTATTTT
TATGAGGAGACTTGTTTCAGCTGGATCAGCGACGTCGAAATCGGTTTCTT
CTCCAGATTTAGAGTCTAGGTTAAGTTTGTCGACCAGCTTAGAAACCTCC
TGGTCCTCTGCTTTTTTAGCCCAATCACCCATGTCGACTG
BO13547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:06:25 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbp80-RG | 1564 | CG17023-RG | 58..890 | 884..52 | 4165 | 100 | Minus |
Dbp80-RE | 1505 | CG17023-RE | 58..890 | 884..52 | 4165 | 100 | Minus |
Dbp80-RD | 1203 | CG17023-RD | 58..890 | 884..52 | 4165 | 100 | Minus |
Dbp80-RG | 1564 | CG17023-RG | 1134..1169 | 54..19 | 180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27293076..27293273 | 643..446 | 990 | 100 | Minus |
3L | 28110227 | 3L | 27332168..27332346 | 333..155 | 895 | 100 | Minus |
3L | 28110227 | 3L | 27292882..27293013 | 775..644 | 660 | 100 | Minus |
3L | 28110227 | 3L | 27331992..27332108 | 449..333 | 585 | 100 | Minus |
3L | 28110227 | 3L | 27350220..27350321 | 154..53 | 510 | 100 | Minus |
3L | 28110227 | 3L | 27279480..27279539 | 835..776 | 300 | 100 | Minus |
3L | 28110227 | 3L | 27279373..27279424 | 884..833 | 260 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 07:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 253..194 | 111 | 65 | Minus |
BO13547.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:06 Download gff for
BO13547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RE | 58..890 | 51..884 | 99 | <- | Minus |
Dbp80-RE | 1028..1059 | 19..50 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:29 Download gff for
BO13547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RD | 58..890 | 52..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:29 Download gff for
BO13547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27279373..27279422 | 835..884 | 100 | -> | Minus |
3L | 27279481..27279539 | 776..834 | 100 | -> | Minus |
3L | 27292882..27293013 | 644..775 | 100 | -> | Minus |
3L | 27293076..27293271 | 448..643 | 100 | -> | Minus |
3L | 27331994..27332108 | 333..447 | 100 | -> | Minus |
3L | 27332169..27332346 | 155..332 | 100 | -> | Minus |
3L | 27350220..27350321 | 53..154 | 100 | -> | Minus |
3L | 27420679..27420712 | 19..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:06 Download gff for
BO13547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2473205..2473306 | 53..154 | 100 | -> | Minus |
3LHet | 2543666..2543699 | 19..52 | 100 | | Minus |
3LHet | 2409909..2409958 | 835..884 | 100 | -> | Minus |
3LHet | 2410017..2410075 | 776..834 | 100 | -> | Minus |
3LHet | 2423418..2423549 | 644..775 | 100 | -> | Minus |
3LHet | 2423612..2423807 | 448..643 | 100 | -> | Minus |
3LHet | 2454979..2455093 | 333..447 | 100 | -> | Minus |
3LHet | 2455154..2455331 | 155..332 | 100 | -> | Minus |
BO13547.5prime Sequence
794 bp (792 high quality bases) assembled on 2006-05-08
> BO13547.5prime
GAAGTTATCAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGG
AGGTTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAA
GAAACCGATTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAA
AATACTAGGAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAAC
AAAAAAATCCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTA
CACCTAAAAGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATAC
TCCATCAAAAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCAC
CGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCA
TTTGTATTGGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCA
GGTTCTGTGTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAG
TGGCTGCGCGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCA
GTACGCGGAGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTT
GATTGGCACCCCAGGAAAACTTTTGGATTGGGGAATAAAATTTCGTTTAT
TTGATATGAAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATG
ATAGCCACCCAAGGTCATCATGATCAATGCATTCGAATACACAAAATGCT
GAATCCACATTGCCAAATGTTGTTTTTCTCTGCTACTTATGGTA
BO13547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:06:26 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbp80-RG | 1564 | CG17023-RG | 58..837 | 15..794 | 3900 | 100 | Plus |
Dbp80-RE | 1505 | CG17023-RE | 58..837 | 15..794 | 3900 | 100 | Plus |
Dbp80-RD | 1203 | CG17023-RD | 58..837 | 15..794 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27293076..27293273 | 256..453 | 990 | 100 | Plus |
3L | 28110227 | 3L | 27332168..27332346 | 566..744 | 895 | 100 | Plus |
3L | 28110227 | 3L | 27292882..27293013 | 124..255 | 660 | 100 | Plus |
3L | 28110227 | 3L | 27331992..27332108 | 450..566 | 585 | 100 | Plus |
3L | 28110227 | 3L | 27279480..27279539 | 64..123 | 300 | 100 | Plus |
3L | 28110227 | 3L | 27279373..27279424 | 15..66 | 260 | 100 | Plus |
3L | 28110227 | 3L | 27350220..27350269 | 745..794 | 250 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 646..705 | 111 | 65 | Plus |
BO13547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:18 Download gff for
BO13547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RE | 58..836 | 15..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:09 Download gff for
BO13547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RD | 58..836 | 15..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:09 Download gff for
BO13547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27279373..27279422 | 15..64 | 100 | -> | Plus |
3L | 27279481..27279539 | 65..123 | 100 | -> | Plus |
3L | 27292882..27293013 | 124..255 | 100 | -> | Plus |
3L | 27293076..27293271 | 256..451 | 100 | -> | Plus |
3L | 27331994..27332108 | 452..566 | 100 | -> | Plus |
3L | 27332169..27332346 | 567..744 | 100 | -> | Plus |
3L | 27350220..27350268 | 745..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:18 Download gff for
BO13547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2409909..2409958 | 15..64 | 100 | -> | Plus |
3LHet | 2410017..2410075 | 65..123 | 100 | -> | Plus |
3LHet | 2423418..2423549 | 124..255 | 100 | -> | Plus |
3LHet | 2423612..2423807 | 256..451 | 100 | -> | Plus |
3LHet | 2454979..2455093 | 452..566 | 100 | -> | Plus |
3LHet | 2455154..2455331 | 567..744 | 100 | -> | Plus |
3LHet | 2473205..2473253 | 745..793 | 100 | | Plus |
BO13547.complete Sequence
898 bp assembled on 2006-10-11
GenBank Submission: FJ632824
> BO13547.complete
GAAGTTATCAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGG
AGGTTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAA
GAAACCGATTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAA
AATACTAGGAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAAC
AAAAAAATCCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTA
CACCTAAAAGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATAC
TCCATCAAAAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCAC
CGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCA
TTTGTATTGGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCA
GGTTCTGTGTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAG
TGGCTGCGCGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCA
GTACGCGGAGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTT
GATTGGCACCCCAGGAAAACTTTTGGATTGGGGAATAAAATTTCGTTTAT
TTGATATGAAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATG
ATAGCCACCCAAGGTCATCATGATCAATGCATTCGAATACACAAAATGCT
GAATCCACATTGCCAAATGTTGTTTTTCTCTGCTACTTATGGTAAAGAGG
TTATGGACTTTGCTCGGCTGATTGTTGCAGATCCCACAATAATAAGACAA
AAAGAACTGCTGCTTGGCTTGCAGCAAAAAGCAAGCTTTCTAGACCAT
BO13547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbp80-RG | 1065 | CG17023-PG | 1..831 | 17..847 | 4155 | 100 | Plus |
Dbp80-RE | 1446 | CG17023-PE | 1..831 | 17..847 | 4155 | 100 | Plus |
Dbp80-RD | 840 | CG17023-PD | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbp80-RG | 1564 | CG17023-RG | 58..890 | 15..847 | 4165 | 100 | Plus |
Dbp80-RE | 1505 | CG17023-RE | 58..890 | 15..847 | 4165 | 100 | Plus |
Dbp80-RD | 1203 | CG17023-RD | 58..890 | 15..847 | 4165 | 100 | Plus |
Dbp80-RG | 1564 | CG17023-RG | 1134..1169 | 845..880 | 180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27293076..27293273 | 256..453 | 990 | 100 | Plus |
3L | 28110227 | 3L | 27332168..27332346 | 566..744 | 895 | 100 | Plus |
3L | 28110227 | 3L | 27292882..27293013 | 124..255 | 660 | 100 | Plus |
3L | 28110227 | 3L | 27331992..27332108 | 450..566 | 585 | 100 | Plus |
3L | 28110227 | 3L | 27350220..27350321 | 745..846 | 510 | 100 | Plus |
3L | 28110227 | 3L | 27279480..27279539 | 64..123 | 300 | 100 | Plus |
3L | 28110227 | 3L | 27279373..27279424 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 646..705 | 111 | 65 | Plus |
BO13547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:03 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:01 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RA | 70..928 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:40 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RE | 60..890 | 17..848 | 99 | <- | Plus |
Dbp80-RE | 1028..1054 | 849..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:04 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RA | 68..933 | 15..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:17 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbp80-RD | 60..890 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:17 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27293076..27293271 | 256..451 | 100 | -> | Plus |
3L | 27331994..27332108 | 452..566 | 100 | -> | Plus |
3L | 27332169..27332346 | 567..744 | 100 | -> | Plus |
3L | 27350220..27350321 | 745..846 | 100 | -> | Plus |
3L | 27420679..27420707 | 847..875 | 100 | | Plus |
3L | 27279375..27279422 | 17..64 | 100 | -> | Plus |
3L | 27279481..27279539 | 65..123 | 100 | -> | Plus |
3L | 27292882..27293013 | 124..255 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:40 Download gff for
BO13547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2454979..2455093 | 452..566 | 100 | -> | Plus |
3LHet | 2409911..2409958 | 17..64 | 100 | -> | Plus |
3LHet | 2410017..2410075 | 65..123 | 100 | -> | Plus |
3LHet | 2423418..2423549 | 124..255 | 100 | -> | Plus |
3LHet | 2423612..2423807 | 256..451 | 100 | -> | Plus |
3LHet | 2455154..2455331 | 567..744 | 100 | -> | Plus |
3LHet | 2473205..2473306 | 745..846 | 100 | -> | Plus |
3LHet | 2543666..2543694 | 847..875 | 100 | | Plus |
BO13547.pep Sequence
Translation from 16 to 898
> BO13547.pep
MGDWAKKAEDQEVSKLVDKLNLDSKSGEETDFDVADPAETSLLIKILGKG
LVNTKLSLDIQQKNPNSPLHSVKTFEALHLKASLLKGIYAMGFNTPSKIQ
ETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLS
PTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKIEEHILIGTPG
KLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQ
MLFFSATYGKEVMDFARLIVADPTIIRQKELLLGLQQKASFLDH
BO13547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbp80-PG | 354 | CG17023-PG | 1..290 | 1..287 | 1420 | 96.6 | Plus |
Dbp80-PB | 447 | CG17023-PB | 1..290 | 1..287 | 1420 | 96.6 | Plus |
Dbp80-PE | 481 | CG17023-PE | 1..290 | 1..287 | 1420 | 96.6 | Plus |
Dbp80-PD | 279 | CG17023-PD | 1..277 | 1..277 | 1419 | 100 | Plus |
Dbp80-PF | 316 | CG17023-PF | 1..125 | 166..287 | 589 | 92 | Plus |