Clone BO13548 Report

Search the DGRC for BO13548

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG2846-RA
Protein status:BO13548.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO13548.5prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO13548.5prime
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAAGCAAGCTTTCTAGACC

BO13548.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PA 462 CG2846-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 997 CG2846-RB 278..736 17..475 2295 100 Plus
CG2846-RA 1210 CG2846-RA 278..736 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912491..7912866 475..100 1880 100 Minus
3R 32079331 3R 7912929..7913013 101..17 425 100 Minus
Blast to na_te.dros performed 2015-02-02 09:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3904..3942 412..450 105 74.4 Plus

BO13548.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:25 Download gff for BO13548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:15 Download gff for BO13548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:28 Download gff for BO13548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..740 7..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:47 Download gff for BO13548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..740 7..481 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:47 Download gff for BO13548.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7912487..7912864 102..481 99 <- Minus
3R 7912929..7913022 7..101 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:28 Download gff for BO13548.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738209..3738586 102..481 99 <- Minus
arm_3R 3738651..3738744 7..101 95   Minus

BO13548.3prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO13548.3prime
ATGGTCTAGAAAGCTTGCTTTCGACGAGCAGAGCTTCTCCGTAAAGAACG
GAGCCTCCTTCAGCTTGGCCTTGTCCGCCTCGTCGAGGAACGCCTTGGCC
TGCTCGATGTCCCCGCGGATGGCGGCAATCAGTGACTCCAGGGAGTCGAA
ACTGCGCTCCGGTCGCAGGTAGCCTACAATGCATATCTTGAGTGTCTGGC
CGTAAAGGTCACAGTTAAAGTCGTGTAGCATGTGCGTCTCCACGCTCTTC
TCCTTGTTGTTGTAGAAGGGATTCCAGCCGATGCTGAGGACCATCTTGTG
CACGGGTCCATTATCCACGTTTGCCCAACCGTAGTACGCGCCAGTGGGCA
GGGATTCCGGCAGCGATTTCACCACCTCCAGCGGAAAGTTAGCTGTTGGG
ATGCCCAGCTCTTTGGAGCCGCGTCCGAAGCCCCGAACAATCTCGCCCCC
AGCGAACAGAGGCAGTTGGCTCAGCATGTCGACTGATAACT

BO13548.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PA 462 CG2846-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 997 CG2846-RB 278..736 477..19 2295 100 Minus
CG2846-RA 1210 CG2846-RA 278..736 477..19 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912491..7912866 19..394 1880 100 Plus
3R 32079331 3R 7912929..7913013 393..477 425 100 Plus
Blast to na_te.dros performed 2015-02-10 18:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3904..3942 82..44 105 74.4 Minus

BO13548.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:24 Download gff for BO13548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:13 Download gff for BO13548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:20 Download gff for BO13548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..740 13..487 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:52 Download gff for BO13548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..740 13..487 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:52 Download gff for BO13548.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7912487..7912864 13..392 99 <- Plus
3R 7912929..7913022 393..487 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:20 Download gff for BO13548.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738209..3738586 13..392 99 <- Plus
arm_3R 3738651..3738744 393..487 95   Plus

BO13548.complete Sequence

493 bp assembled on 2006-10-11

GenBank Submission: FJ632825

> BO13548.complete
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAAGCAAGCTTTCTAGACCAT

BO13548.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 462 CG2846-PB 1..459 17..475 2295 100 Plus
CG2846-RA 462 CG2846-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 997 CG2846-RB 278..736 17..475 2295 100 Plus
CG2846-RA 1210 CG2846-RA 278..736 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912491..7912866 475..100 1880 100 Minus
3R 32079331 3R 7912929..7913013 101..17 425 100 Minus
Blast to na_te.dros performed 2014-11-27 15:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3904..3942 412..450 105 74.4 Plus

BO13548.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:05 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:23 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 256..727 7..481 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:06 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 278..736 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:05 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 256..727 7..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:29 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 278..736 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:29 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7912487..7912864 102..477 99 <- Minus
3R 7912929..7913013 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:06 Download gff for BO13548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738209..3738586 102..477 99 <- Minus
arm_3R 3738651..3738735 17..101 100   Minus

BO13548.pep Sequence

Translation from 16 to 493

> BO13548.pep
MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYG
WANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICI
VGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKLC
SSKASFLDH

BO13548.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PB 153 CG2846-PB 1..153 1..153 807 100 Plus
CG2846-PA 153 CG2846-PA 1..153 1..153 807 100 Plus