Clone Sequence Records
BO13548.5prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO13548.5prime
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAAGCAAGCTTTCTAGACC
BO13548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-PA | 462 | CG2846-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 997 | CG2846-RB | 278..736 | 17..475 | 2295 | 100 | Plus |
CG2846-RA | 1210 | CG2846-RA | 278..736 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7912491..7912866 | 475..100 | 1880 | 100 | Minus |
3R | 32079331 | 3R | 7912929..7913013 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 09:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3904..3942 | 412..450 | 105 | 74.4 | Plus |
BO13548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:25 Download gff for
BO13548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:15 Download gff for
BO13548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:28 Download gff for
BO13548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..740 | 7..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:47 Download gff for
BO13548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..740 | 7..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:47 Download gff for
BO13548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7912487..7912864 | 102..481 | 99 | <- | Minus |
3R | 7912929..7913022 | 7..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:28 Download gff for
BO13548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3738209..3738586 | 102..481 | 99 | <- | Minus |
arm_3R | 3738651..3738744 | 7..101 | 95 | | Minus |
BO13548.3prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO13548.3prime
ATGGTCTAGAAAGCTTGCTTTCGACGAGCAGAGCTTCTCCGTAAAGAACG
GAGCCTCCTTCAGCTTGGCCTTGTCCGCCTCGTCGAGGAACGCCTTGGCC
TGCTCGATGTCCCCGCGGATGGCGGCAATCAGTGACTCCAGGGAGTCGAA
ACTGCGCTCCGGTCGCAGGTAGCCTACAATGCATATCTTGAGTGTCTGGC
CGTAAAGGTCACAGTTAAAGTCGTGTAGCATGTGCGTCTCCACGCTCTTC
TCCTTGTTGTTGTAGAAGGGATTCCAGCCGATGCTGAGGACCATCTTGTG
CACGGGTCCATTATCCACGTTTGCCCAACCGTAGTACGCGCCAGTGGGCA
GGGATTCCGGCAGCGATTTCACCACCTCCAGCGGAAAGTTAGCTGTTGGG
ATGCCCAGCTCTTTGGAGCCGCGTCCGAAGCCCCGAACAATCTCGCCCCC
AGCGAACAGAGGCAGTTGGCTCAGCATGTCGACTGATAACT
BO13548.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-PA | 462 | CG2846-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 997 | CG2846-RB | 278..736 | 477..19 | 2295 | 100 | Minus |
CG2846-RA | 1210 | CG2846-RA | 278..736 | 477..19 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7912491..7912866 | 19..394 | 1880 | 100 | Plus |
3R | 32079331 | 3R | 7912929..7913013 | 393..477 | 425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3904..3942 | 82..44 | 105 | 74.4 | Minus |
BO13548.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:24 Download gff for
BO13548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:13 Download gff for
BO13548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:20 Download gff for
BO13548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..740 | 13..487 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:52 Download gff for
BO13548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..740 | 13..487 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:52 Download gff for
BO13548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7912487..7912864 | 13..392 | 99 | <- | Plus |
3R | 7912929..7913022 | 393..487 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:20 Download gff for
BO13548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3738209..3738586 | 13..392 | 99 | <- | Plus |
arm_3R | 3738651..3738744 | 393..487 | 95 | | Plus |
BO13548.complete Sequence
493 bp assembled on 2006-10-11
GenBank Submission: FJ632825
> BO13548.complete
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAAGCAAGCTTTCTAGACCAT
BO13548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 462 | CG2846-PB | 1..459 | 17..475 | 2295 | 100 | Plus |
CG2846-RA | 462 | CG2846-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 997 | CG2846-RB | 278..736 | 17..475 | 2295 | 100 | Plus |
CG2846-RA | 1210 | CG2846-RA | 278..736 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7912491..7912866 | 475..100 | 1880 | 100 | Minus |
3R | 32079331 | 3R | 7912929..7913013 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3904..3942 | 412..450 | 105 | 74.4 | Plus |
BO13548.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:05 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:23 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 256..727 | 7..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:06 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 278..736 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:05 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 256..727 | 7..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:29 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 278..736 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:29 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7912487..7912864 | 102..477 | 99 | <- | Minus |
3R | 7912929..7913013 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:06 Download gff for
BO13548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3738209..3738586 | 102..477 | 99 | <- | Minus |
arm_3R | 3738651..3738735 | 17..101 | 100 | | Minus |
BO13548.pep Sequence
Translation from 16 to 493
> BO13548.pep
MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYG
WANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICI
VGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKLC
SSKASFLDH
BO13548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-PB | 153 | CG2846-PB | 1..153 | 1..153 | 807 | 100 | Plus |
CG2846-PA | 153 | CG2846-PA | 1..153 | 1..153 | 807 | 100 | Plus |