Clone Sequence Records
BO13549.3prime Sequence
629 bp (628 high quality bases) assembled on 2006-05-08
> BO13549.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCGTTTCTTGCTCCAGTTCGCCAGCCT
GGATTTCCTCCGGCGTTCGCAGATCGATGGCGAACTTGTGTCGCGTGGGT
GTAATAGTGTCGCTGGGCGTGGCCTCGCCCTCCTCCTCACCGGTTGCCTC
CTTGACCCGTCGCGAGTAATCCTGGAAGGCGGCGGCCAGGGCAAAGGTCA
ACTTCCGCGCCATCGCACGACTGTCGCACACGAAGGCGTGAACCTCAAAG
GGATGCGGACTCGACTCGTCCTTCACCACGATCATGGCAAAGACCCTTGT
GTAGACCAGGTCCTGAACGCCATACGAGATCGTGTCGATGGGATAGCTCC
AGTGATTGATGCTGGCCTTTGGCGATATGATCTCCAGCTGGACTCCGTCG
GTGGACACCTTCAGTTCGCAGTTGGGCAGCACCTTATTGGGCGGCAGGTT
CTTGGCCACGCCCACCATTATGTCCACCGGACGACGCGTATACTTAATGC
CCCATAAGCCACGTGCCACTTCGGAACCAATGTACTTCACCTTGAACGTT
ATGGGCAAATCCTCCACATTGACCTGGCTGTCCAGATCGGTGGTACTACT
GTTGTTGGAGGCCATGTCGACTGATAACT
BO13549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-PB | 600 | CG14968-RB | 1..597 | 615..19 | 2960 | 99.8 | Minus |
CG14968-PC | 600 | CG14968-RC | 1..597 | 615..19 | 2960 | 99.8 | Minus |
CG14968-PD | 600 | CG14968-RD | 1..597 | 615..19 | 2960 | 99.8 | Minus |
CG14968-PE | 600 | CG14968-RE | 1..597 | 615..19 | 2960 | 99.8 | Minus |
CG14968-PA | 600 | CG14968-RA | 1..597 | 615..19 | 2960 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 958 | CG14968-RA | 172..768 | 615..19 | 2970 | 99.8 | Minus |
CG14968-RE | 1053 | CG14968-RE | 267..863 | 615..19 | 2970 | 99.8 | Minus |
CG14968-RD | 1027 | CG14968-RD | 241..837 | 615..19 | 2970 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3299526..3300049 | 19..542 | 2605 | 99.8 | Plus |
3L | 28110227 | 3L | 3300719..3300797 | 537..615 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3308 | 63..18 | 111 | 75.5 | Minus |
BO13549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:26 Download gff for
BO13549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:16 Download gff for
BO13549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:29 Download gff for
BO13549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..842 | 11..623 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:32 Download gff for
BO13549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..842 | 11..623 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:32 Download gff for
BO13549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3299521..3300047 | 11..540 | 99 | <- | Plus |
3L | 3300723..3300801 | 541..623 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:29 Download gff for
BO13549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3300723..3300801 | 541..623 | 95 | | Plus |
arm_3L | 3299521..3300047 | 11..540 | 99 | <- | Plus |
BO13549.5prime Sequence
629 bp (628 high quality bases) assembled on 2006-05-08
> BO13549.5prime
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGGCAAGCTTTCTAGACC
BO13549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-PB | 600 | CG14968-RB | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG14968-PC | 600 | CG14968-RC | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG14968-PD | 600 | CG14968-RD | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG14968-PE | 600 | CG14968-RE | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG14968-PA | 600 | CG14968-RA | 1..597 | 17..613 | 2960 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 958 | CG14968-RA | 172..768 | 17..613 | 2970 | 99.8 | Plus |
CG14968-RE | 1053 | CG14968-RE | 267..863 | 17..613 | 2970 | 99.8 | Plus |
CG14968-RD | 1027 | CG14968-RD | 241..837 | 17..613 | 2970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3299526..3300049 | 613..90 | 2605 | 99.8 | Minus |
3L | 28110227 | 3L | 3300719..3300797 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 23:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3308 | 569..614 | 111 | 75.5 | Plus |
BO13549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:27 Download gff for
BO13549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:17 Download gff for
BO13549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:22 Download gff for
BO13549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..842 | 9..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:35 Download gff for
BO13549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..842 | 9..621 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:35 Download gff for
BO13549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3299521..3300047 | 92..621 | 99 | <- | Minus |
3L | 3300723..3300801 | 9..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:22 Download gff for
BO13549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3299521..3300047 | 92..621 | 99 | <- | Minus |
arm_3L | 3300723..3300801 | 9..91 | 95 | | Minus |
BO13549.complete Sequence
631 bp assembled on 2006-10-11
GenBank Submission: FJ632826
> BO13549.complete
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGGCAAGCTTTCTAGACCAT
BO13549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 600 | CG14968-PA | 1..597 | 17..613 | 2970 | 99.8 | Plus |
CG14968-RE | 600 | CG14968-PE | 1..597 | 17..613 | 2970 | 99.8 | Plus |
CG14968-RD | 600 | CG14968-PD | 1..597 | 17..613 | 2970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 958 | CG14968-RA | 172..768 | 17..613 | 2970 | 99.8 | Plus |
CG14968-RE | 1053 | CG14968-RE | 267..863 | 17..613 | 2970 | 99.8 | Plus |
CG14968-RD | 1027 | CG14968-RD | 241..837 | 17..613 | 2970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3299526..3300049 | 613..90 | 2605 | 99.8 | Minus |
3L | 28110227 | 3L | 3300719..3300797 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3308 | 569..614 | 111 | 75.5 | Plus |
BO13549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:24 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:37 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 227..838 | 9..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:34 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 241..837 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:24 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 227..838 | 9..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:06 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 241..837 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:06 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3299524..3300047 | 92..615 | 99 | <- | Minus |
3L | 3300723..3300797 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:34 Download gff for
BO13549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3299524..3300047 | 92..615 | 99 | <- | Minus |
arm_3L | 3300723..3300797 | 17..91 | 100 | | Minus |
BO13549.pep Sequence
Translation from 16 to 631
> BO13549.pep
MASNNSSTTDLDSQVNVEDLPITFKVKYIGSEVARGLWGIKYTRRPVDIM
VGVAKNLPPNKVLPNCELKVSTDGVQLEIISPKASINHWSYPIDTISYGV
QDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQDY
SRRVKEATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEAA
SFLDH
BO13549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-PA | 199 | CG14968-PA | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PE | 199 | CG14968-PE | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PD | 199 | CG14968-PD | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PC | 199 | CG14968-PC | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PB | 199 | CG14968-PB | 1..199 | 1..199 | 1023 | 100 | Plus |