Clone BO13549 Report

Search the DGRC for BO13549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG14968-RB
Protein status:BO13549.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO13549.3prime Sequence

629 bp (628 high quality bases) assembled on 2006-05-08

> BO13549.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCGTTTCTTGCTCCAGTTCGCCAGCCT
GGATTTCCTCCGGCGTTCGCAGATCGATGGCGAACTTGTGTCGCGTGGGT
GTAATAGTGTCGCTGGGCGTGGCCTCGCCCTCCTCCTCACCGGTTGCCTC
CTTGACCCGTCGCGAGTAATCCTGGAAGGCGGCGGCCAGGGCAAAGGTCA
ACTTCCGCGCCATCGCACGACTGTCGCACACGAAGGCGTGAACCTCAAAG
GGATGCGGACTCGACTCGTCCTTCACCACGATCATGGCAAAGACCCTTGT
GTAGACCAGGTCCTGAACGCCATACGAGATCGTGTCGATGGGATAGCTCC
AGTGATTGATGCTGGCCTTTGGCGATATGATCTCCAGCTGGACTCCGTCG
GTGGACACCTTCAGTTCGCAGTTGGGCAGCACCTTATTGGGCGGCAGGTT
CTTGGCCACGCCCACCATTATGTCCACCGGACGACGCGTATACTTAATGC
CCCATAAGCCACGTGCCACTTCGGAACCAATGTACTTCACCTTGAACGTT
ATGGGCAAATCCTCCACATTGACCTGGCTGTCCAGATCGGTGGTACTACT
GTTGTTGGAGGCCATGTCGACTGATAACT

BO13549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PB 600 CG14968-RB 1..597 615..19 2960 99.8 Minus
CG14968-PC 600 CG14968-RC 1..597 615..19 2960 99.8 Minus
CG14968-PD 600 CG14968-RD 1..597 615..19 2960 99.8 Minus
CG14968-PE 600 CG14968-RE 1..597 615..19 2960 99.8 Minus
CG14968-PA 600 CG14968-RA 1..597 615..19 2960 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 958 CG14968-RA 172..768 615..19 2970 99.8 Minus
CG14968-RE 1053 CG14968-RE 267..863 615..19 2970 99.8 Minus
CG14968-RD 1027 CG14968-RD 241..837 615..19 2970 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299526..3300049 19..542 2605 99.8 Plus
3L 28110227 3L 3300719..3300797 537..615 395 100 Plus
Blast to na_te.dros performed 2015-02-10 21:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3260..3308 63..18 111 75.5 Minus

BO13549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:26 Download gff for BO13549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-PA 1..600 18..615 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:16 Download gff for BO13549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-PA 1..600 18..615 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:29 Download gff for BO13549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..842 11..623 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:32 Download gff for BO13549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..842 11..623 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:32 Download gff for BO13549.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3299521..3300047 11..540 99 <- Plus
3L 3300723..3300801 541..623 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:29 Download gff for BO13549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3300723..3300801 541..623 95   Plus
arm_3L 3299521..3300047 11..540 99 <- Plus

BO13549.5prime Sequence

629 bp (628 high quality bases) assembled on 2006-05-08

> BO13549.5prime
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGGCAAGCTTTCTAGACC

BO13549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PB 600 CG14968-RB 1..597 17..613 2960 99.8 Plus
CG14968-PC 600 CG14968-RC 1..597 17..613 2960 99.8 Plus
CG14968-PD 600 CG14968-RD 1..597 17..613 2960 99.8 Plus
CG14968-PE 600 CG14968-RE 1..597 17..613 2960 99.8 Plus
CG14968-PA 600 CG14968-RA 1..597 17..613 2960 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 958 CG14968-RA 172..768 17..613 2970 99.8 Plus
CG14968-RE 1053 CG14968-RE 267..863 17..613 2970 99.8 Plus
CG14968-RD 1027 CG14968-RD 241..837 17..613 2970 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299526..3300049 613..90 2605 99.8 Minus
3L 28110227 3L 3300719..3300797 95..17 395 100 Minus
Blast to na_te.dros performed 2015-02-09 23:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3260..3308 569..614 111 75.5 Plus

BO13549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:27 Download gff for BO13549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-PA 1..600 17..614 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:17 Download gff for BO13549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-PA 1..600 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:22 Download gff for BO13549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..842 9..621 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:35 Download gff for BO13549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..842 9..621 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:35 Download gff for BO13549.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3299521..3300047 92..621 99 <- Minus
3L 3300723..3300801 9..91 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:22 Download gff for BO13549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3299521..3300047 92..621 99 <- Minus
arm_3L 3300723..3300801 9..91 95   Minus

BO13549.complete Sequence

631 bp assembled on 2006-10-11

GenBank Submission: FJ632826

> BO13549.complete
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGGCAAGCTTTCTAGACCAT

BO13549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 600 CG14968-PA 1..597 17..613 2970 99.8 Plus
CG14968-RE 600 CG14968-PE 1..597 17..613 2970 99.8 Plus
CG14968-RD 600 CG14968-PD 1..597 17..613 2970 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 958 CG14968-RA 172..768 17..613 2970 99.8 Plus
CG14968-RE 1053 CG14968-RE 267..863 17..613 2970 99.8 Plus
CG14968-RD 1027 CG14968-RD 241..837 17..613 2970 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299526..3300049 613..90 2605 99.8 Minus
3L 28110227 3L 3300719..3300797 95..17 395 100 Minus
Blast to na_te.dros performed 2014-11-27 13:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3260..3308 569..614 111 75.5 Plus

BO13549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:24 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 1..600 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:37 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 227..838 9..621 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:34 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 241..837 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:24 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 227..838 9..621 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:06 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 241..837 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:06 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3299524..3300047 92..615 99 <- Minus
3L 3300723..3300797 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:34 Download gff for BO13549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3299524..3300047 92..615 99 <- Minus
arm_3L 3300723..3300797 17..91 100   Minus

BO13549.pep Sequence

Translation from 16 to 631

> BO13549.pep
MASNNSSTTDLDSQVNVEDLPITFKVKYIGSEVARGLWGIKYTRRPVDIM
VGVAKNLPPNKVLPNCELKVSTDGVQLEIISPKASINHWSYPIDTISYGV
QDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQDY
SRRVKEATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEAA
SFLDH

BO13549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PA 199 CG14968-PA 1..199 1..199 1023 100 Plus
CG14968-PE 199 CG14968-PE 1..199 1..199 1023 100 Plus
CG14968-PD 199 CG14968-PD 1..199 1..199 1023 100 Plus
CG14968-PC 199 CG14968-PC 1..199 1..199 1023 100 Plus
CG14968-PB 199 CG14968-PB 1..199 1..199 1023 100 Plus