Clone Sequence Records
BO13550.3prime Sequence
933 bp (788 high quality bases) assembled on 2006-05-08
> BO13550.3prime
ATGGTCTAGAAAGCTTGCCTTTCGCTCCATGGGCTTGACTTCCAGCAATT
GAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTTA
AGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGGC
TTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTCA
GCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTTG
GTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGTT
CTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATGC
TCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGCA
CGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCTT
CTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGTT
GCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCGA
TGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTTC
TTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGGC
AGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTCG
CGGTGCCGCTTCTGCTCCTCTGCCAAACGCTCCTCGGCACGCAGTTCCGA
CTCTCGGTACTGCTCTTCGAGCATGTGATAACGCGCCTGAAGGACTGCAT
ATTCGGTCTTGTTGCGGGTTGTCCGATCCTCAGCTATATTCTGTGTATCT
GACAGATCGTCCACCTTGCGCTGCAGCAGTTCCAGCCTATAATCGTAGTC
ATGACGATTCTCCAAGCTTATGTCGCTGTACAT
BO13550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 592..1506 | 933..19 | 4550 | 99.8 | Minus |
CG33991-PA | 1509 | nuf-RA | 592..1506 | 933..19 | 4550 | 99.8 | Minus |
CG33991-PB | 918 | nuf-RB | 1..915 | 933..19 | 4550 | 99.8 | Minus |
CG33991-PD | 951 | nuf-RD | 82..948 | 885..19 | 4310 | 99.8 | Minus |
CG33991-PE | 1587 | nuf-RE | 718..1584 | 885..19 | 4310 | 99.8 | Minus |
CG33991-PF | 1587 | nuf-RF | 718..1584 | 885..19 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RB | 2373 | CG33991-RB | 261..1175 | 933..19 | 4560 | 99.9 | Minus |
nuf-RA | 2696 | CG33991-RA | 1334..2248 | 933..19 | 4560 | 99.9 | Minus |
nuf-RC | 3446 | CG33991-RC | 1334..2248 | 933..19 | 4560 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 752..294 | 2295 | 100 | Minus |
3L | 28110227 | 3L | 14231177..14231325 | 293..145 | 745 | 100 | Minus |
3L | 28110227 | 3L | 14230175..14230310 | 886..751 | 665 | 99.3 | Minus |
3L | 28110227 | 3L | 14231924..14232052 | 147..19 | 645 | 100 | Minus |
3L | 28110227 | 3L | 14213156..14213203 | 933..886 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:10:05 has no hits.
BO13550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:28 Download gff for
BO13550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PB | 1..918 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:19 Download gff for
BO13550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PB | 1..918 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:23 Download gff for
BO13550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1334..2248 | 19..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:55 Download gff for
BO13550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1334..2248 | 19..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:55 Download gff for
BO13550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14213156..14213203 | 886..933 | 100 | -> | Minus |
3L | 14230176..14230310 | 751..885 | 99 | -> | Minus |
3L | 14230656..14231112 | 294..750 | 100 | -> | Minus |
3L | 14231177..14231325 | 145..293 | 100 | -> | Minus |
3L | 14231927..14232052 | 19..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:23 Download gff for
BO13550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14206256..14206303 | 886..933 | 100 | -> | Minus |
arm_3L | 14223276..14223410 | 751..885 | 99 | -> | Minus |
arm_3L | 14223756..14224212 | 294..750 | 100 | -> | Minus |
arm_3L | 14224277..14224425 | 145..293 | 100 | -> | Minus |
arm_3L | 14225027..14225152 | 19..144 | 100 | | Minus |
BO13550.5prime Sequence
883 bp (771 high quality bases) assembled on 2006-05-08
> BO13550.5prime
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAAC
BO13550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG33991-PA | 1509 | nuf-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG33991-PB | 918 | nuf-RB | 1..276 | 608..883 | 1380 | 100 | Plus |
CG33991-PD | 951 | nuf-RD | 82..309 | 656..883 | 1140 | 100 | Plus |
CG33991-PE | 1587 | nuf-RE | 718..945 | 656..883 | 1140 | 100 | Plus |
CG33991-PF | 1587 | nuf-RF | 718..945 | 656..883 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 741..1609 | 15..883 | 4330 | 99.9 | Plus |
nuf-RA | 2696 | CG33991-RA | 741..1609 | 15..883 | 4330 | 99.9 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..1609 | 15..883 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14200162..14200447 | 147..432 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 655..790 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 15..149 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 539..655 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14230654..14230748 | 789..883 | 475 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 433..501 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 499..540 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:09:20 has no hits.
BO13550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:29 Download gff for
BO13550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PC | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:20 Download gff for
BO13550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:07 Download gff for
BO13550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1609 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:50:34 Download gff for
BO13550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1609 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:50:34 Download gff for
BO13550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14199960..14200100 | 9..149 | 96 | -> | Plus |
3L | 14200165..14200447 | 150..432 | 100 | -> | Plus |
3L | 14200739..14200807 | 433..501 | 100 | -> | Plus |
3L | 14212194..14212232 | 502..540 | 100 | -> | Plus |
3L | 14213089..14213203 | 541..655 | 100 | -> | Plus |
3L | 14230176..14230310 | 656..790 | 100 | -> | Plus |
3L | 14230656..14230748 | 791..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:07 Download gff for
BO13550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14193060..14193200 | 9..149 | 96 | -> | Plus |
arm_3L | 14193265..14193547 | 150..432 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 433..501 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 502..540 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 541..655 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 656..790 | 100 | -> | Plus |
arm_3L | 14223756..14223848 | 791..883 | 100 | | Plus |
BO13550.complete Sequence
1540 bp assembled on 2007-10-17
GenBank Submission: FJ632827
> BO13550.complete
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAA
GATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCC
GACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAG
GAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCA
CGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCA
CCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAG
GAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACT
GGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCC
TCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCC
ACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAAC
ACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTAC
AACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTAT
ATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGA
AGTCAAGCCCATGGAGCGAAAGGCAAGCTTTCTAGACCAT
BO13550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RA | 1509 | CG33991-PA | 1..1506 | 17..1522 | 7515 | 99.9 | Plus |
nuf-RC | 1509 | CG33991-PC | 1..1506 | 17..1522 | 7515 | 99.9 | Plus |
nuf-RL | 1548 | CG33991-PL | 1..1380 | 17..1396 | 6885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RA | 2696 | CG33991-RA | 741..2248 | 15..1522 | 7525 | 99.9 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..2248 | 15..1522 | 7525 | 99.9 | Plus |
nuf-RL | 2735 | CG33991-RL | 741..2122 | 15..1396 | 6895 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 789..1247 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14200162..14200447 | 147..432 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 1248..1396 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 655..790 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 15..149 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 14231924..14232052 | 1394..1522 | 645 | 100 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 539..655 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 433..501 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 499..540 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:47:01 has no hits.
BO13550.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:03 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 1..1509 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:22 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 739..2244 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:04 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 743..2248 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:52 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 739..2244 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:47 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 743..2248 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:47 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14200165..14200447 | 150..432 | 100 | -> | Plus |
3L | 14200739..14200807 | 433..501 | 100 | -> | Plus |
3L | 14212194..14212232 | 502..540 | 100 | -> | Plus |
3L | 14213089..14213203 | 541..655 | 100 | -> | Plus |
3L | 14230176..14230310 | 656..790 | 100 | -> | Plus |
3L | 14231927..14232052 | 1397..1524 | 98 | | Plus |
3L | 14199968..14200100 | 17..149 | 99 | -> | Plus |
3L | 14230656..14231112 | 791..1247 | 100 | -> | Plus |
3L | 14231177..14231325 | 1248..1396 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:04 Download gff for
BO13550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14193068..14193200 | 17..149 | 99 | -> | Plus |
arm_3L | 14193265..14193547 | 150..432 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 433..501 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 502..540 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 541..655 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 656..790 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 791..1247 | 100 | -> | Plus |
arm_3L | 14224277..14224425 | 1248..1396 | 100 | -> | Plus |
arm_3L | 14225027..14225152 | 1397..1524 | 98 | | Plus |
BO13550.pep Sequence
Translation from 16 to 1540
> BO13550.pep
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGGSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RKASFLDH
BO13550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-PA | 502 | CG33991-PA | 1..502 | 1..502 | 2546 | 99.8 | Plus |
nuf-PC | 502 | CG33991-PC | 1..502 | 1..502 | 2546 | 99.8 | Plus |
nuf-PL | 515 | CG33991-PL | 1..515 | 1..502 | 2522 | 97.3 | Plus |
nuf-PG | 530 | CG33991-PG | 1..530 | 1..502 | 2496 | 94.5 | Plus |
nuf-PH | 529 | CG33991-PH | 1..529 | 1..502 | 2480 | 94.3 | Plus |