Clone BO13550 Report

Search the DGRC for BO13550

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:50
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO13550.pep: validated not full length
Sequenced Size:1540

Clone Sequence Records

BO13550.3prime Sequence

933 bp (788 high quality bases) assembled on 2006-05-08

> BO13550.3prime
ATGGTCTAGAAAGCTTGCCTTTCGCTCCATGGGCTTGACTTCCAGCAATT
GAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTTA
AGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGGC
TTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTCA
GCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTTG
GTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGTT
CTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATGC
TCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGCA
CGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCTT
CTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGTT
GCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCGA
TGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTTC
TTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGGC
AGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTCG
CGGTGCCGCTTCTGCTCCTCTGCCAAACGCTCCTCGGCACGCAGTTCCGA
CTCTCGGTACTGCTCTTCGAGCATGTGATAACGCGCCTGAAGGACTGCAT
ATTCGGTCTTGTTGCGGGTTGTCCGATCCTCAGCTATATTCTGTGTATCT
GACAGATCGTCCACCTTGCGCTGCAGCAGTTCCAGCCTATAATCGTAGTC
ATGACGATTCTCCAAGCTTATGTCGCTGTACAT

BO13550.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 592..1506 933..19 4550 99.8 Minus
CG33991-PA 1509 nuf-RA 592..1506 933..19 4550 99.8 Minus
CG33991-PB 918 nuf-RB 1..915 933..19 4550 99.8 Minus
CG33991-PD 951 nuf-RD 82..948 885..19 4310 99.8 Minus
CG33991-PE 1587 nuf-RE 718..1584 885..19 4310 99.8 Minus
CG33991-PF 1587 nuf-RF 718..1584 885..19 4310 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RB 2373 CG33991-RB 261..1175 933..19 4560 99.9 Minus
nuf-RA 2696 CG33991-RA 1334..2248 933..19 4560 99.9 Minus
nuf-RC 3446 CG33991-RC 1334..2248 933..19 4560 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 752..294 2295 100 Minus
3L 28110227 3L 14231177..14231325 293..145 745 100 Minus
3L 28110227 3L 14230175..14230310 886..751 665 99.3 Minus
3L 28110227 3L 14231924..14232052 147..19 645 100 Minus
3L 28110227 3L 14213156..14213203 933..886 240 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:10:05 has no hits.

BO13550.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:28 Download gff for BO13550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PB 1..918 18..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:19 Download gff for BO13550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PB 1..918 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:23 Download gff for BO13550.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1334..2248 19..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:55 Download gff for BO13550.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1334..2248 19..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:55 Download gff for BO13550.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14213156..14213203 886..933 100 -> Minus
3L 14230176..14230310 751..885 99 -> Minus
3L 14230656..14231112 294..750 100 -> Minus
3L 14231177..14231325 145..293 100 -> Minus
3L 14231927..14232052 19..144 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:23 Download gff for BO13550.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14206256..14206303 886..933 100 -> Minus
arm_3L 14223276..14223410 751..885 99 -> Minus
arm_3L 14223756..14224212 294..750 100 -> Minus
arm_3L 14224277..14224425 145..293 100 -> Minus
arm_3L 14225027..14225152 19..144 100   Minus

BO13550.5prime Sequence

883 bp (771 high quality bases) assembled on 2006-05-08

> BO13550.5prime
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAAC

BO13550.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 1..867 17..883 4310 99.8 Plus
CG33991-PA 1509 nuf-RA 1..867 17..883 4310 99.8 Plus
CG33991-PB 918 nuf-RB 1..276 608..883 1380 100 Plus
CG33991-PD 951 nuf-RD 82..309 656..883 1140 100 Plus
CG33991-PE 1587 nuf-RE 718..945 656..883 1140 100 Plus
CG33991-PF 1587 nuf-RF 718..945 656..883 1140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RL 2735 CG33991-RL 741..1609 15..883 4330 99.9 Plus
nuf-RA 2696 CG33991-RA 741..1609 15..883 4330 99.9 Plus
nuf-RC 3446 CG33991-RC 741..1609 15..883 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14200162..14200447 147..432 1430 100 Plus
3L 28110227 3L 14230175..14230310 655..790 680 100 Plus
3L 28110227 3L 14199966..14200100 15..149 660 99.3 Plus
3L 28110227 3L 14213087..14213203 539..655 585 100 Plus
3L 28110227 3L 14230654..14230748 789..883 475 100 Plus
3L 28110227 3L 14200739..14200807 433..501 345 100 Plus
3L 28110227 3L 14212191..14212232 499..540 210 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:09:20 has no hits.

BO13550.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:29 Download gff for BO13550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PC 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:20 Download gff for BO13550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:07 Download gff for BO13550.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1609 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:50:34 Download gff for BO13550.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1609 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:50:34 Download gff for BO13550.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14199960..14200100 9..149 96 -> Plus
3L 14200165..14200447 150..432 100 -> Plus
3L 14200739..14200807 433..501 100 -> Plus
3L 14212194..14212232 502..540 100 -> Plus
3L 14213089..14213203 541..655 100 -> Plus
3L 14230176..14230310 656..790 100 -> Plus
3L 14230656..14230748 791..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:07 Download gff for BO13550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14193060..14193200 9..149 96 -> Plus
arm_3L 14193265..14193547 150..432 100 -> Plus
arm_3L 14193839..14193907 433..501 100 -> Plus
arm_3L 14205294..14205332 502..540 100 -> Plus
arm_3L 14206189..14206303 541..655 100 -> Plus
arm_3L 14223276..14223410 656..790 100 -> Plus
arm_3L 14223756..14223848 791..883 100   Plus

BO13550.complete Sequence

1540 bp assembled on 2007-10-17

GenBank Submission: FJ632827

> BO13550.complete
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAA
GATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCC
GACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAG
GAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCA
CGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCA
CCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAG
GAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACT
GGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCC
TCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCC
ACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAAC
ACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTAC
AACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTAT
ATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGA
AGTCAAGCCCATGGAGCGAAAGGCAAGCTTTCTAGACCAT

BO13550.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RA 1509 CG33991-PA 1..1506 17..1522 7515 99.9 Plus
nuf-RC 1509 CG33991-PC 1..1506 17..1522 7515 99.9 Plus
nuf-RL 1548 CG33991-PL 1..1380 17..1396 6885 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RA 2696 CG33991-RA 741..2248 15..1522 7525 99.9 Plus
nuf-RC 3446 CG33991-RC 741..2248 15..1522 7525 99.9 Plus
nuf-RL 2735 CG33991-RL 741..2122 15..1396 6895 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 789..1247 2295 100 Plus
3L 28110227 3L 14200162..14200447 147..432 1430 100 Plus
3L 28110227 3L 14231177..14231325 1248..1396 745 100 Plus
3L 28110227 3L 14230175..14230310 655..790 680 100 Plus
3L 28110227 3L 14199966..14200100 15..149 660 99.3 Plus
3L 28110227 3L 14231924..14232052 1394..1522 645 100 Plus
3L 28110227 3L 14213087..14213203 539..655 585 100 Plus
3L 28110227 3L 14200739..14200807 433..501 345 100 Plus
3L 28110227 3L 14212191..14212232 499..540 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:47:01 has no hits.

BO13550.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:03 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 1..1509 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:22 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 739..2244 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:04 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 743..2248 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:52 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 739..2244 17..1524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:47 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 743..2248 17..1524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:47 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14200165..14200447 150..432 100 -> Plus
3L 14200739..14200807 433..501 100 -> Plus
3L 14212194..14212232 502..540 100 -> Plus
3L 14213089..14213203 541..655 100 -> Plus
3L 14230176..14230310 656..790 100 -> Plus
3L 14231927..14232052 1397..1524 98   Plus
3L 14199968..14200100 17..149 99 -> Plus
3L 14230656..14231112 791..1247 100 -> Plus
3L 14231177..14231325 1248..1396 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:04 Download gff for BO13550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14193068..14193200 17..149 99 -> Plus
arm_3L 14193265..14193547 150..432 100 -> Plus
arm_3L 14193839..14193907 433..501 100 -> Plus
arm_3L 14205294..14205332 502..540 100 -> Plus
arm_3L 14206189..14206303 541..655 100 -> Plus
arm_3L 14223276..14223410 656..790 100 -> Plus
arm_3L 14223756..14224212 791..1247 100 -> Plus
arm_3L 14224277..14224425 1248..1396 100 -> Plus
arm_3L 14225027..14225152 1397..1524 98   Plus

BO13550.pep Sequence

Translation from 16 to 1540

> BO13550.pep
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGGSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RKASFLDH

BO13550.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PA 502 CG33991-PA 1..502 1..502 2546 99.8 Plus
nuf-PC 502 CG33991-PC 1..502 1..502 2546 99.8 Plus
nuf-PL 515 CG33991-PL 1..515 1..502 2522 97.3 Plus
nuf-PG 530 CG33991-PG 1..530 1..502 2496 94.5 Plus
nuf-PH 529 CG33991-PH 1..529 1..502 2480 94.3 Plus