Clone Sequence Records
BO13554.3prime Sequence
898 bp (771 high quality bases) assembled on 2006-05-08
> BO13554.3prime
ATGGTCTAGAAAGCTTGCCAGTTTACTGTTTCCCGCTAGTAGATCGCGTA
CCAATCGAACTGCGTACATAGCCGTTCCAGGAGCCGTGGTCACACCGTAG
CCGCCGTGGCCGTAGTTGTGGACTACCTTCAGCCGCCTGCCTTCCGGATT
CGTGATCAGTTCTGGCTCCACCCGAACGACGGAGCGGTGTGGCCGCAGAC
CAACACATTCCCGCACGATCTCCGCTTTCCGGAGACTGGGCAGCAAATCG
TAGCAACGCTCTCGAATGGCCATGCTATCGTATTTGCACCACTCGGTGTT
GTAGCTGTCGAATTGGCGACATCCTCCCAGGGTCACAGTCTCAAATCCGG
GAAGAACGTAGGTGTCGTAATCGCCGTAGAAAGCCGTCTTTACCCAGGGA
GCACGCACTTTGAGCACTTGACCCCGAATGGGAACCAAGTGCTGGTCCCC
ACACAACTCCTTGGCTCCCATTCCGGTGCAGTTAAGGAGCAAGTCAATGT
TCTGCGGCACTTCGAAAAAGCTGTTCACATGCTGACGGACAACCTCTCCT
CCGTTCTCCAGGAATTTTTTAGTGGCATAGGGCAAGAAGAGGCGGCTTTC
CGTTAGGCATGTGGTGAAGAAGGATCCGTACTTCCAGCCGCCGTTGCATA
GCCTCAGTTCCTCCTCGGTGGCTCTTCGGTAGACGGGCAATAGTTTCTCA
ATAAAGTGGTTCCGTACGATGGAGGGGGAGGTGCGGGAGTAAATATAGCC
GGATAATTGGCACACGCCCGCCAGAGGAGCCTCCTTGGAGCGACGCAGCT
CATCCCAGTAGTTGAAGGCATCGGTCATTCATTGTTGCGTAATTTTCTGG
GTGGGGCCCATAAAGCTGGTTCCAGGTCGGAAAATTCCAGCCGCCACA
BO13554.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-PA | 1008 | CG12338-RA | 126..1005 | 898..19 | 4375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-RB | 1357 | CG12338-RB | 414..1293 | 898..19 | 4385 | 99.9 | Minus |
CG12338-RA | 1126 | CG12338-RA | 183..1062 | 898..19 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10729642..10730188 | 19..565 | 2735 | 100 | Plus |
2R | 25286936 | 2R | 10730258..10730404 | 566..712 | 735 | 100 | Plus |
2R | 25286936 | 2R | 10730485..10730608 | 712..835 | 605 | 99.2 | Plus |
2R | 25286936 | 2R | 10730674..10730736 | 836..898 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:30:41 has no hits.
BO13554.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:36 Download gff for
BO13554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-PA | 127..1008 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:29 Download gff for
BO13554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-PA | 127..1008 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:01 Download gff for
BO13554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 184..1062 | 19..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:21 Download gff for
BO13554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 184..1062 | 19..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:21 Download gff for
BO13554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10729642..10730188 | 19..565 | 100 | <- | Plus |
2R | 10730258..10730403 | 566..711 | 100 | <- | Plus |
2R | 10730485..10730608 | 712..835 | 99 | <- | Plus |
2R | 10730674..10730735 | 836..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:01 Download gff for
BO13554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6617147..6617693 | 19..565 | 100 | <- | Plus |
arm_2R | 6617763..6617908 | 566..711 | 100 | <- | Plus |
arm_2R | 6617990..6618113 | 712..835 | 99 | <- | Plus |
arm_2R | 6618179..6618240 | 836..897 | 100 | | Plus |
BO13554.5prime Sequence
827 bp (781 high quality bases) assembled on 2006-05-08
> BO13554.5prime
GAAGTTATCAGTCGACATGCATTTCGGAGTCTTGGGAAGCGGTATCATTG
GTCTTACGACCGCCTTAGAACTCCAGAAGGAGTTTCCCACAGCAAGGGTT
TCCGTGATTGCGGATCGGTTTAACGAGGACACCGTCAGCTATGTGGCGGC
TGGAATTTTCCGACCTGGAACCAGCTTTATGGGCCCCACCCAGAAAATTA
CGCAACAATGGATGACCGATGCCTTCAACTACTGGGATGAGCTGCGTCGC
TCCAAGGAGGCTCCTCTGGCGGGCGTGTGCCAATTATCCGGCTATATTTA
CTCCCGCACCTCCCCCTCCATCGTACGGAACCACTTTATTGAGAAACTAT
TGCCCGTCTACCGAAGAGCCACCGAGGAGGAACTGAGGCTATGCAACGGC
GGCTGGAAGTACGGATCCTTCTTCACCACATGCCTAACGGAAAGCCGCCT
CTTCTTGCCCTATGCCACTAAAAAATTCCTGGAGAACGGAGGAGAGGTTG
TCCGTCAGCATGTGAACAGCTTTTTCGAAGTGCCGCAGAACATTGACTTG
CTCCTTAACTGCACCGGAATGGGAGCCAAGGAGTTGTGTGGGGACCAGCA
CTTGGTTCCCATTCGGGGTCAAGTGCTCAAAGTGCGTGCTCCCTGGGTAA
AGACGGCTTTCTACGGCGATTACGACACCTACGTTCTTCCCGGATTTGAG
ACTGTGACCCTGGGAGGATGTCGCCAATTCGACAGCTACAACACCGAGTG
GTGCAAATACGATAGCATGGCCATTCGAGAGCGTTGCTACGATTTGCTGC
CCAGTCTCCGGAAAGCGGAGATCGTGC
BO13554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-PA | 1008 | CG12338-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-RB | 1357 | CG12338-RB | 289..1099 | 17..827 | 4055 | 100 | Plus |
CG12338-RA | 1126 | CG12338-RA | 58..868 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10729836..10730188 | 827..475 | 1765 | 100 | Minus |
2R | 25286936 | 2R | 10730674..10730861 | 204..17 | 940 | 100 | Minus |
2R | 25286936 | 2R | 10730258..10730404 | 474..328 | 735 | 100 | Minus |
2R | 25286936 | 2R | 10730485..10730608 | 328..205 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:06:02 has no hits.
BO13554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:37 Download gff for
BO13554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:31 Download gff for
BO13554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:27 Download gff for
BO13554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 54..868 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:05 Download gff for
BO13554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 54..868 | 9..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:05 Download gff for
BO13554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10730485..10730608 | 205..328 | 100 | <- | Minus |
2R | 10730674..10730865 | 9..204 | 97 | | Minus |
2R | 10729836..10730188 | 475..827 | 100 | <- | Minus |
2R | 10730258..10730403 | 329..474 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:27 Download gff for
BO13554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6617341..6617693 | 475..827 | 100 | <- | Minus |
arm_2R | 6617763..6617908 | 329..474 | 100 | <- | Minus |
arm_2R | 6617990..6618113 | 205..328 | 100 | <- | Minus |
arm_2R | 6618179..6618370 | 9..204 | 97 | | Minus |
BO13554.complete Sequence
1039 bp assembled on 2006-10-11
GenBank Submission: FJ632829
> BO13554.complete
GAAGTTATCAGTCGACATGCATTTCGGAGTCTTGGGAAGCGGTATCATTG
GTCTTACGACCGCCTTAGAACTCCAGAAGGAGTTTCCCACAGCAAGGGTT
TCCGTGATTGCGGATCGGTTTAACGAGGACACCGTCAGCTATGTGGCGGC
TGGAATTTTCCGACCTGGAACCAGCTTTATGGGCCCCACCCAGAAAATTA
CGCAACAATGGATGACCGATGCCTTCAACTACTGGGATGAGCTGCGTCGC
TCCAAGGAGGCTCCTCTGGCGGGCGTGTGCCAATTATCCGGCTATATTTA
CTCCCGCACCTCCCCCTCCATCGTACGGAACCACTTTATTGAGAAACTAT
TGCCCGTCTACCGAAGAGCCACCGAGGAGGAACTGAGGCTATGCAACGGC
GGCTGGAAGTACGGATCCTTCTTCACCACATGCCTAACGGAAAGCCGCCT
CTTCTTGCCCTATGCCACTAAAAAATTCCTGGAGAACGGAGGAGAGGTTG
TCCGTCAGCATGTGAACAGCTTTTTCGAAGTGCCGCAGAACATTGACTTG
CTCCTTAACTGCACCGGAATGGGAGCCAAGGAGTTGTGTGGGGACCAGCA
CTTGGTTCCCATTCGGGGTCAAGTGCTCAAAGTGCGTGCTCCCTGGGTAA
AGACGGCTTTCTACGGCGATTACGACACCTACGTTCTTCCCGGATTTGAG
ACTGTGACCCTGGGAGGATGTCGCCAATTCGACAGCTACAACACCGAGTG
GTGCAAATACGATAGCATGGCCATTCGAGAGCGTTGCTACGATTTGCTGC
CCAGTCTCCGGAAAGCGGAGATCGTGCGGGAATGTGTTGGTCTGCGGCCA
CACCGCTCCGTCGTTCGGGTGGAGCCAGAACTGATCACGAATCCGGAAGG
CAGGCGGCTGAAGGTAGTCCACAACTACGGCCACGGCGGCTACGGTGTGA
CCACGGCTCCTGGAACGGCTATGTACGCAGTTCGATTGGTACGCGATCTA
CTAGCGGGAAACAGTAAACTGGCAAGCTTTCTAGACCAT
BO13554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-RB | 1008 | CG12338-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
CG12338-RA | 1008 | CG12338-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-RB | 1357 | CG12338-RB | 289..1293 | 17..1021 | 5025 | 100 | Plus |
CG12338-RA | 1126 | CG12338-RA | 58..1062 | 17..1021 | 5025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10729642..10730188 | 1021..475 | 2735 | 100 | Minus |
2R | 25286936 | 2R | 10730674..10730861 | 204..17 | 940 | 100 | Minus |
2R | 25286936 | 2R | 10730258..10730404 | 474..328 | 735 | 100 | Minus |
2R | 25286936 | 2R | 10730485..10730608 | 328..205 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:04 has no hits.
BO13554.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:25 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 1..1008 | 17..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:38 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 50..1058 | 9..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:49 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 58..1062 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:26 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 50..1058 | 9..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:37 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12338-RA | 58..1062 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:37 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10729640..10730188 | 475..1023 | 99 | <- | Minus |
2R | 10730258..10730403 | 329..474 | 100 | <- | Minus |
2R | 10730485..10730608 | 205..328 | 100 | <- | Minus |
2R | 10730674..10730861 | 17..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:49 Download gff for
BO13554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6618179..6618366 | 17..204 | 100 | | Minus |
arm_2R | 6617145..6617693 | 475..1023 | 99 | <- | Minus |
arm_2R | 6617763..6617908 | 329..474 | 100 | <- | Minus |
arm_2R | 6617990..6618113 | 205..328 | 100 | <- | Minus |
BO13554.pep Sequence
Translation from 16 to 1039
> BO13554.pep
MHFGVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRP
GTSFMGPTQKITQQWMTDAFNYWDELRRSKEAPLAGVCQLSGYIYSRTSP
SIVRNHFIEKLLPVYRRATEEELRLCNGGWKYGSFFTTCLTESRLFLPYA
TKKFLENGGEVVRQHVNSFFEVPQNIDLLLNCTGMGAKELCGDQHLVPIR
GQVLKVRAPWVKTAFYGDYDTYVLPGFETVTLGGCRQFDSYNTEWCKYDS
MAIRERCYDLLPSLRKAEIVRECVGLRPHRSVVRVEPELITNPEGRRLKV
VHNYGHGGYGVTTAPGTAMYAVRLVRDLLAGNSKLASFLDH
BO13554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12338-PB | 335 | CG12338-PB | 1..335 | 1..335 | 1786 | 100 | Plus |
CG12338-PA | 335 | CG12338-PA | 1..335 | 1..335 | 1786 | 100 | Plus |
CG11236-PA | 341 | CG11236-PA | 3..325 | 2..318 | 408 | 31.8 | Plus |
CG11236-PB | 338 | CG11236-PB | 3..322 | 2..318 | 390 | 31.5 | Plus |