Clone BO13554 Report

Search the DGRC for BO13554

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG12338-RA
Protein status:BO13554.pep: validated full length
Sequenced Size:1039

Clone Sequence Records

BO13554.3prime Sequence

898 bp (771 high quality bases) assembled on 2006-05-08

> BO13554.3prime
ATGGTCTAGAAAGCTTGCCAGTTTACTGTTTCCCGCTAGTAGATCGCGTA
CCAATCGAACTGCGTACATAGCCGTTCCAGGAGCCGTGGTCACACCGTAG
CCGCCGTGGCCGTAGTTGTGGACTACCTTCAGCCGCCTGCCTTCCGGATT
CGTGATCAGTTCTGGCTCCACCCGAACGACGGAGCGGTGTGGCCGCAGAC
CAACACATTCCCGCACGATCTCCGCTTTCCGGAGACTGGGCAGCAAATCG
TAGCAACGCTCTCGAATGGCCATGCTATCGTATTTGCACCACTCGGTGTT
GTAGCTGTCGAATTGGCGACATCCTCCCAGGGTCACAGTCTCAAATCCGG
GAAGAACGTAGGTGTCGTAATCGCCGTAGAAAGCCGTCTTTACCCAGGGA
GCACGCACTTTGAGCACTTGACCCCGAATGGGAACCAAGTGCTGGTCCCC
ACACAACTCCTTGGCTCCCATTCCGGTGCAGTTAAGGAGCAAGTCAATGT
TCTGCGGCACTTCGAAAAAGCTGTTCACATGCTGACGGACAACCTCTCCT
CCGTTCTCCAGGAATTTTTTAGTGGCATAGGGCAAGAAGAGGCGGCTTTC
CGTTAGGCATGTGGTGAAGAAGGATCCGTACTTCCAGCCGCCGTTGCATA
GCCTCAGTTCCTCCTCGGTGGCTCTTCGGTAGACGGGCAATAGTTTCTCA
ATAAAGTGGTTCCGTACGATGGAGGGGGAGGTGCGGGAGTAAATATAGCC
GGATAATTGGCACACGCCCGCCAGAGGAGCCTCCTTGGAGCGACGCAGCT
CATCCCAGTAGTTGAAGGCATCGGTCATTCATTGTTGCGTAATTTTCTGG
GTGGGGCCCATAAAGCTGGTTCCAGGTCGGAAAATTCCAGCCGCCACA

BO13554.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-PA 1008 CG12338-RA 126..1005 898..19 4375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-RB 1357 CG12338-RB 414..1293 898..19 4385 99.9 Minus
CG12338-RA 1126 CG12338-RA 183..1062 898..19 4385 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10729642..10730188 19..565 2735 100 Plus
2R 25286936 2R 10730258..10730404 566..712 735 100 Plus
2R 25286936 2R 10730485..10730608 712..835 605 99.2 Plus
2R 25286936 2R 10730674..10730736 836..898 315 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:30:41 has no hits.

BO13554.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:36 Download gff for BO13554.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-PA 127..1008 18..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:29 Download gff for BO13554.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-PA 127..1008 18..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:01 Download gff for BO13554.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 184..1062 19..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:21 Download gff for BO13554.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 184..1062 19..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:21 Download gff for BO13554.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10729642..10730188 19..565 100 <- Plus
2R 10730258..10730403 566..711 100 <- Plus
2R 10730485..10730608 712..835 99 <- Plus
2R 10730674..10730735 836..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:01 Download gff for BO13554.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6617147..6617693 19..565 100 <- Plus
arm_2R 6617763..6617908 566..711 100 <- Plus
arm_2R 6617990..6618113 712..835 99 <- Plus
arm_2R 6618179..6618240 836..897 100   Plus

BO13554.5prime Sequence

827 bp (781 high quality bases) assembled on 2006-05-08

> BO13554.5prime
GAAGTTATCAGTCGACATGCATTTCGGAGTCTTGGGAAGCGGTATCATTG
GTCTTACGACCGCCTTAGAACTCCAGAAGGAGTTTCCCACAGCAAGGGTT
TCCGTGATTGCGGATCGGTTTAACGAGGACACCGTCAGCTATGTGGCGGC
TGGAATTTTCCGACCTGGAACCAGCTTTATGGGCCCCACCCAGAAAATTA
CGCAACAATGGATGACCGATGCCTTCAACTACTGGGATGAGCTGCGTCGC
TCCAAGGAGGCTCCTCTGGCGGGCGTGTGCCAATTATCCGGCTATATTTA
CTCCCGCACCTCCCCCTCCATCGTACGGAACCACTTTATTGAGAAACTAT
TGCCCGTCTACCGAAGAGCCACCGAGGAGGAACTGAGGCTATGCAACGGC
GGCTGGAAGTACGGATCCTTCTTCACCACATGCCTAACGGAAAGCCGCCT
CTTCTTGCCCTATGCCACTAAAAAATTCCTGGAGAACGGAGGAGAGGTTG
TCCGTCAGCATGTGAACAGCTTTTTCGAAGTGCCGCAGAACATTGACTTG
CTCCTTAACTGCACCGGAATGGGAGCCAAGGAGTTGTGTGGGGACCAGCA
CTTGGTTCCCATTCGGGGTCAAGTGCTCAAAGTGCGTGCTCCCTGGGTAA
AGACGGCTTTCTACGGCGATTACGACACCTACGTTCTTCCCGGATTTGAG
ACTGTGACCCTGGGAGGATGTCGCCAATTCGACAGCTACAACACCGAGTG
GTGCAAATACGATAGCATGGCCATTCGAGAGCGTTGCTACGATTTGCTGC
CCAGTCTCCGGAAAGCGGAGATCGTGC

BO13554.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-PA 1008 CG12338-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-RB 1357 CG12338-RB 289..1099 17..827 4055 100 Plus
CG12338-RA 1126 CG12338-RA 58..868 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10729836..10730188 827..475 1765 100 Minus
2R 25286936 2R 10730674..10730861 204..17 940 100 Minus
2R 25286936 2R 10730258..10730404 474..328 735 100 Minus
2R 25286936 2R 10730485..10730608 328..205 620 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:06:02 has no hits.

BO13554.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:37 Download gff for BO13554.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:31 Download gff for BO13554.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:27 Download gff for BO13554.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 54..868 9..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:05 Download gff for BO13554.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 54..868 9..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:05 Download gff for BO13554.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10730485..10730608 205..328 100 <- Minus
2R 10730674..10730865 9..204 97   Minus
2R 10729836..10730188 475..827 100 <- Minus
2R 10730258..10730403 329..474 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:27 Download gff for BO13554.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6617341..6617693 475..827 100 <- Minus
arm_2R 6617763..6617908 329..474 100 <- Minus
arm_2R 6617990..6618113 205..328 100 <- Minus
arm_2R 6618179..6618370 9..204 97   Minus

BO13554.complete Sequence

1039 bp assembled on 2006-10-11

GenBank Submission: FJ632829

> BO13554.complete
GAAGTTATCAGTCGACATGCATTTCGGAGTCTTGGGAAGCGGTATCATTG
GTCTTACGACCGCCTTAGAACTCCAGAAGGAGTTTCCCACAGCAAGGGTT
TCCGTGATTGCGGATCGGTTTAACGAGGACACCGTCAGCTATGTGGCGGC
TGGAATTTTCCGACCTGGAACCAGCTTTATGGGCCCCACCCAGAAAATTA
CGCAACAATGGATGACCGATGCCTTCAACTACTGGGATGAGCTGCGTCGC
TCCAAGGAGGCTCCTCTGGCGGGCGTGTGCCAATTATCCGGCTATATTTA
CTCCCGCACCTCCCCCTCCATCGTACGGAACCACTTTATTGAGAAACTAT
TGCCCGTCTACCGAAGAGCCACCGAGGAGGAACTGAGGCTATGCAACGGC
GGCTGGAAGTACGGATCCTTCTTCACCACATGCCTAACGGAAAGCCGCCT
CTTCTTGCCCTATGCCACTAAAAAATTCCTGGAGAACGGAGGAGAGGTTG
TCCGTCAGCATGTGAACAGCTTTTTCGAAGTGCCGCAGAACATTGACTTG
CTCCTTAACTGCACCGGAATGGGAGCCAAGGAGTTGTGTGGGGACCAGCA
CTTGGTTCCCATTCGGGGTCAAGTGCTCAAAGTGCGTGCTCCCTGGGTAA
AGACGGCTTTCTACGGCGATTACGACACCTACGTTCTTCCCGGATTTGAG
ACTGTGACCCTGGGAGGATGTCGCCAATTCGACAGCTACAACACCGAGTG
GTGCAAATACGATAGCATGGCCATTCGAGAGCGTTGCTACGATTTGCTGC
CCAGTCTCCGGAAAGCGGAGATCGTGCGGGAATGTGTTGGTCTGCGGCCA
CACCGCTCCGTCGTTCGGGTGGAGCCAGAACTGATCACGAATCCGGAAGG
CAGGCGGCTGAAGGTAGTCCACAACTACGGCCACGGCGGCTACGGTGTGA
CCACGGCTCCTGGAACGGCTATGTACGCAGTTCGATTGGTACGCGATCTA
CTAGCGGGAAACAGTAAACTGGCAAGCTTTCTAGACCAT

BO13554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-RB 1008 CG12338-PB 1..1005 17..1021 5025 100 Plus
CG12338-RA 1008 CG12338-PA 1..1005 17..1021 5025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-RB 1357 CG12338-RB 289..1293 17..1021 5025 100 Plus
CG12338-RA 1126 CG12338-RA 58..1062 17..1021 5025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10729642..10730188 1021..475 2735 100 Minus
2R 25286936 2R 10730674..10730861 204..17 940 100 Minus
2R 25286936 2R 10730258..10730404 474..328 735 100 Minus
2R 25286936 2R 10730485..10730608 328..205 620 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:04 has no hits.

BO13554.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:25 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 1..1008 17..1022 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:38 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 50..1058 9..1021 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:49 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 58..1062 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:26 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 50..1058 9..1021 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:37 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
CG12338-RA 58..1062 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:37 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10729640..10730188 475..1023 99 <- Minus
2R 10730258..10730403 329..474 100 <- Minus
2R 10730485..10730608 205..328 100 <- Minus
2R 10730674..10730861 17..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:49 Download gff for BO13554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6618179..6618366 17..204 100   Minus
arm_2R 6617145..6617693 475..1023 99 <- Minus
arm_2R 6617763..6617908 329..474 100 <- Minus
arm_2R 6617990..6618113 205..328 100 <- Minus

BO13554.pep Sequence

Translation from 16 to 1039

> BO13554.pep
MHFGVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRP
GTSFMGPTQKITQQWMTDAFNYWDELRRSKEAPLAGVCQLSGYIYSRTSP
SIVRNHFIEKLLPVYRRATEEELRLCNGGWKYGSFFTTCLTESRLFLPYA
TKKFLENGGEVVRQHVNSFFEVPQNIDLLLNCTGMGAKELCGDQHLVPIR
GQVLKVRAPWVKTAFYGDYDTYVLPGFETVTLGGCRQFDSYNTEWCKYDS
MAIRERCYDLLPSLRKAEIVRECVGLRPHRSVVRVEPELITNPEGRRLKV
VHNYGHGGYGVTTAPGTAMYAVRLVRDLLAGNSKLASFLDH

BO13554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12338-PB 335 CG12338-PB 1..335 1..335 1786 100 Plus
CG12338-PA 335 CG12338-PA 1..335 1..335 1786 100 Plus
CG11236-PA 341 CG11236-PA 3..325 2..318 408 31.8 Plus
CG11236-PB 338 CG11236-PB 3..322 2..318 390 31.5 Plus