Clone Sequence Records
BO13555.complete Sequence
1435 bp assembled on 2009-09-17
GenBank Submission: FJ632830
> BO13555.complete
GAAGTTATCAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGG
TGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTC
CAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCAC
GGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGT
GGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAAC
AAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCA
AGTGGCCAGGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGA
TTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAG
GAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCT
GTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTT
ACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAG
GCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGA
GATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTT
TCAAGAATGTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTTCAT
CAGTCGAAGCTGTACAACGACACGTTGGCGGATATCTCCACTCGATTGGG
TTTCCTTTACACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATATGT
GTCGCTATGAGCAGGCGTGGAATGTGGACCGCAATAGCGTCTGGTGCGGC
GCCTTCTTGCCGGAGCAAATAACGGTCTTTGAGTACCTGGAAGATCTAAA
GTACTACTATGGCTCGGGCTATGGTTTCCCGGAAAACGCACATCTCAACT
GCCGACTGGTGCAGGACCTGCTCACCCACCTGAGCAATCCGGTGTCGCCG
CATGTGGTAGCTCATTTCGGTCACTCGACTGGTCTCCTAACTCTCCTAAC
TGCGCTGGGAATCCAGAAGGACGACATCAAGTTGCGGGCAGACAATTACG
ATAGTTTGACGAGCCGCCGTTGGAAGAGCAGCCTGATCGATCCGTTTGCC
GCCAATTTCGTGGCGGTGAAATACGACTGTCCGGCGGACTTGGATCGCGA
GAAGGTGGTCTTCTTCCTCAACCAGCAGGCCGTGCAGCTGGACTGGTGCA
GCGTCGGTCTGTGCAAGTGGTCAGATGTCCTCGAGAAGTACAAGACCATT
GCGGATGCGGATTGTGGAGAATACTACTGCCGGACGGGAGGTGCTCCATC
GCTGGGATCCGGAGTTGGCGGACTTCTGGCCACCACGCTCGCCGCCATGC
TGGTCTACTTAATGCACGCAAGCTTTCTAGACCAT
BO13555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-RC | 1404 | CG4123-PC | 1..1401 | 17..1417 | 7005 | 100 | Plus |
| Mipp1-RA | 1404 | CG4123-PA | 1..1401 | 17..1417 | 7005 | 100 | Plus |
| Mipp1-RB | 1404 | CG4123-PB | 1..1401 | 17..1417 | 7005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-RC | 2009 | CG4123-RC | 133..1533 | 17..1417 | 7005 | 100 | Plus |
| Mipp1-RA | 1828 | CG4123-RA | 133..1533 | 17..1417 | 7005 | 100 | Plus |
| Mipp1-RB | 1769 | CG4123-RB | 74..1474 | 17..1417 | 7005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16563924..16564517 | 1417..824 | 2970 | 100 | Minus |
| 3L | 28110227 | 3L | 16565609..16565863 | 271..17 | 1275 | 100 | Minus |
| 3L | 28110227 | 3L | 16564719..16564962 | 750..507 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 16565033..16565271 | 508..270 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 16564573..16564649 | 826..750 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:39:06 has no hits.
BO13555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:06 Download gff for
BO13555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RA | 129..1529 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:46 Download gff for
BO13555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 74..1474 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:07 Download gff for
BO13555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RA | 129..1529 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:40 Download gff for
BO13555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 74..1474 | 17..1419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:40 Download gff for
BO13555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16563922..16564517 | 824..1419 | 99 | <- | Minus |
| 3L | 16564576..16564648 | 751..823 | 100 | <- | Minus |
| 3L | 16564719..16564960 | 509..750 | 100 | <- | Minus |
| 3L | 16565033..16565269 | 272..508 | 100 | <- | Minus |
| 3L | 16565609..16565863 | 17..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:46 Download gff for
BO13555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16557022..16557617 | 824..1419 | 99 | <- | Minus |
| arm_3L | 16557676..16557748 | 751..823 | 100 | <- | Minus |
| arm_3L | 16557819..16558060 | 509..750 | 100 | <- | Minus |
| arm_3L | 16558133..16558369 | 272..508 | 100 | <- | Minus |
| arm_3L | 16558709..16558963 | 17..271 | 100 | | Minus |
BO13555.3prime Sequence
829 bp (817 high quality bases) assembled on 2006-05-08
> BO13555.3prime
ATGGTCTAGAAAGCTTGCGTGCATTAAGTAGACCAGCATGGCGGCGAGCG
TGGTGGCCAGAAGTCCGCCAACTCCGGATCCCAGCGATGGAGCACCTCCC
GTCCGGCAGTAGTATTCTCCACAATCCGCATCCGCAATGGTCTTGTACTT
CTCGAGGACATCTGACCACTTGCACAGACCGACGCTGCACCAGTCCAGCT
GCACGGCCTGCTGGTTGAGGAAGAAGACCACCTTCTCGCGATCCAAGTCC
GCCGGACAGTCGTATTTCACCGCCACGAAATTGGCGGCAAACGGATCGAT
CAGGCTGCTCTTCCAACGGCGGCTCGTCAAACTATCGTAATTGTCTGCCC
GCAACTTGATGTCGTCCTTCTGGATTCCCAGCGCAGTTAGGAGAGTTAGG
AGACCAGTCGAGTGACCGAAATGAGCTACCACATGCGGCGACACCGGATT
GCTCAGGTGGGTGAGCAGGTCCTGCACCAGTCGGCAGTTGAGATGTGCGT
TTTCCGGGAAACCATAGCCCGAGCCATAGTAGTACTTTAGATCTTCCAGG
TACTCAAAGACCGTTATTTGCTCCGGCAAGAAGGCGCCGCACCAGACGCT
ATTGCGGTCCACATTCCACGCCTGCTCATAGCGACACATATCGTACATTA
GCTTGATGTCCGCCTCCTCCAGGGTGTAAAGGAAACCCAATCGAGTGGAG
ATATCCGCCAACGTGTCGTTGTACAGCTTCGACTGATGAAACTTGTAGTA
CTCAGAGCCCTCATCCTTGTAGTTCACATTCTTGAAAGAGGAGCAATAGT
CATAGGGACGCAGCAGCAGATCCTGCTTT
BO13555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4123-PB | 1404 | Mipp1-RB | 592..1401 | 828..19 | 4050 | 100 | Minus |
| CG4123-PA | 1404 | Mipp1-RA | 592..1401 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-RC | 2009 | CG4123-RC | 724..1533 | 828..19 | 4050 | 100 | Minus |
| Mipp1-RA | 1828 | CG4123-RA | 724..1533 | 828..19 | 4050 | 100 | Minus |
| Mipp1-RB | 1769 | CG4123-RB | 665..1474 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16563924..16564517 | 19..612 | 2970 | 100 | Plus |
| 3L | 28110227 | 3L | 16564719..16564861 | 686..828 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 16564573..16564649 | 610..686 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:10:40 has no hits.
BO13555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:38 Download gff for
BO13555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-PB | 591..1404 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:32 Download gff for
BO13555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4123-PA | 591..1404 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:19 Download gff for
BO13555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 664..1482 | 9..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:42 Download gff for
BO13555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 664..1482 | 9..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:42 Download gff for
BO13555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16564576..16564648 | 613..685 | 100 | <- | Plus |
| 3L | 16563916..16564517 | 9..612 | 99 | <- | Plus |
| 3L | 16564719..16564861 | 686..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:19 Download gff for
BO13555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16557819..16557961 | 686..829 | 99 | | Plus |
| arm_3L | 16557676..16557748 | 613..685 | 100 | <- | Plus |
| arm_3L | 16557016..16557617 | 9..612 | 99 | <- | Plus |
BO13555.5prime Sequence
879 bp (810 high quality bases) assembled on 2006-05-08
> BO13555.5prime
GAAGTTATCACCCTTAAAGCGCCTGCTGATATTGCTACTGCTGCCACTGG
TGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTC
CAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCAC
GGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGT
GGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAAC
AAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCA
AGTGGCCAGGACCAATCCCGAAACGGATGCTCTCTGCCAGACGGATCTGA
TTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAG
GAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCT
GTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTT
ACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAG
GCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGA
GATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTT
TCAAGAATGTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTTCAT
CAGTCGAAGCTGTACAACGACACGTTGGCGGATATCTCCACTCGATTGGG
TTTCCTTTACACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATATGT
GTCGCTATGAGCAAGCGTGGAATGTGGACCGCAATAGCGTCTGGTGCGGC
GCCTTCTTGCCGGAGCAAATAACGGTCTT
BO13555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4123-PB | 1404 | Mipp1-RB | 3..863 | 19..879 | 4255 | 99.7 | Plus |
| CG4123-PA | 1404 | Mipp1-RA | 3..863 | 19..879 | 4255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-RC | 2009 | CG4123-RC | 135..995 | 19..879 | 4275 | 99.8 | Plus |
| Mipp1-RA | 1828 | CG4123-RA | 135..995 | 19..879 | 4275 | 99.8 | Plus |
| Mipp1-RB | 1769 | CG4123-RB | 76..936 | 19..879 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16565609..16565861 | 271..19 | 1265 | 100 | Minus |
| 3L | 28110227 | 3L | 16564719..16564962 | 750..507 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 16565033..16565271 | 508..270 | 1180 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16564573..16564649 | 826..750 | 370 | 98.7 | Minus |
| 3L | 28110227 | 3L | 16564462..16564517 | 879..824 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:14:10 has no hits.
BO13555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:39 Download gff for
BO13555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-PB | 1..863 | 18..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:33 Download gff for
BO13555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4123-PA | 1..863 | 18..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:11 Download gff for
BO13555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 76..936 | 19..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:51 Download gff for
BO13555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 76..936 | 19..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:51 Download gff for
BO13555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16565609..16565861 | 19..271 | 100 | | Minus |
| 3L | 16564462..16564517 | 824..879 | 100 | <- | Minus |
| 3L | 16564576..16564648 | 751..823 | 98 | <- | Minus |
| 3L | 16564719..16564960 | 509..750 | 100 | <- | Minus |
| 3L | 16565033..16565269 | 272..508 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:11 Download gff for
BO13555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16557562..16557617 | 824..879 | 100 | <- | Minus |
| arm_3L | 16557676..16557748 | 751..823 | 98 | <- | Minus |
| arm_3L | 16557819..16558060 | 509..750 | 100 | <- | Minus |
| arm_3L | 16558133..16558369 | 272..508 | 99 | <- | Minus |
| arm_3L | 16558709..16558961 | 19..271 | 100 | | Minus |
BO13555.pep Sequence
Translation from 16 to 1435
> BO13555.pep
MRLLILLLLPLVAIAQDDYCFSKDTSRLQTRQFSSKTAYQIVKGTDIDKQ
YLVPGCQPQKMWIFHRHGTRLPKKSMINKASRVAELRDLIINNYQVARTK
PETDALCQTDLIAIKLWKWNSSITPDMEEYLTAQGYEDLRGTAKLYQRYY
PTVLTANYNDTYYQFRHTDTQRTTESFKAFAEGLFGSQNAAHPVEIPKQD
LLLRPYDYCSSFKNVNYKDEGSEYYKFHQSKLYNDTLADISTRLGFLYTL
EEADIKLMYDMCRYEQAWNVDRNSVWCGAFLPEQITVFEYLEDLKYYYGS
GYGFPENAHLNCRLVQDLLTHLSNPVSPHVVAHFGHSTGLLTLLTALGIQ
KDDIKLRADNYDSLTSRRWKSSLIDPFAANFVAVKYDCPADLDREKVVFF
LNQQAVQLDWCSVGLCKWSDVLEKYKTIADADCGEYYCRTGGAPSLGSGV
GGLLATTLAAMLVYLMHASFLDH
BO13555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-PC | 467 | CG4123-PC | 1..467 | 1..467 | 2495 | 100 | Plus |
| Mipp1-PA | 467 | CG4123-PA | 1..467 | 1..467 | 2495 | 100 | Plus |
| Mipp1-PB | 467 | CG4123-PB | 1..467 | 1..467 | 2495 | 100 | Plus |
| Mipp2-PA | 453 | CG4317-PA | 10..452 | 3..439 | 473 | 29.7 | Plus |
