Clone BO13558 Report

Search the DGRC for BO13558

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG15345-RA
Protein status:BO13558.pep: validated full length
Sequenced Size:415

Clone Sequence Records

BO13558.5prime Sequence

413 bp (412 high quality bases) assembled on 2006-05-08

> BO13558.5prime
GAAGTTATCAGTCGACATGAGCAGCAATTCCAAGTCGAGATGGAGGAGTT
TGAAACTAGTTTATCAATTTGAAAGTAGCAACGATTTCGGAACAGAAAGA
GATGCAGAAGTCGACACCGGAGAAGGAGAGAATTCAAACCATGAGACTGA
AGTGCATCAGCCAGAGCAAGAGTCCACCGAGGATGAGCGATTCCAATGCC
ACGTCAAGAATGAGTCCATCAACGAAGATCTCTCAGAGGAAGAAGATTAC
AGCGAACTGAGCACATTAAGACTGGAGGACATTGAAGAGAATGTCCTCGA
AGGTACTCCTCGAATCGTTGAGATGCAGGATGACAGCAAAGTGCAACCAA
ACCACAAATACGTCAATGTAAAAATGTTTATTTTATATACATATAAAGCA
AGCTTTCTAGACC

BO13558.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 384 CG15345-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1085 CG15345-RA 401..781 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397461..8397841 397..17 1905 100 Minus
Blast to na_te.dros performed 2015-02-12 06:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1401..1462 396..335 112 68.8 Minus

BO13558.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:45 Download gff for BO13558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-PA 1..384 17..401 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:42 Download gff for BO13558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-PA 1..384 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:16 Download gff for BO13558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..785 10..402 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:47 Download gff for BO13558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..785 10..402 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:47 Download gff for BO13558.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8397457..8397845 10..402 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:16 Download gff for BO13558.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291490..8291878 10..402 98   Minus

BO13558.3prime Sequence

413 bp (412 high quality bases) assembled on 2006-05-08

> BO13558.3prime
ATGGTCTAGAAAGCTTGCTTTATATGTATATAAAATAAACATTTTTACAT
TGACGTATTTGTGGTTTGGTTGCACTTTGCTGTCATCCTGCATCTCAACG
ATTCGAGGAGTACCTTCGAGGACATTCTCTTCAATGTCCTCCAGTCTTAA
TGTGCTCAGTTCGCTGTAATCTTCTTCCTCTGAGAGATCTTCGTTGATGG
ACTCATTCTTGACGTGGCATTGGAATCGCTCATCCTCGGTGGACTCTTGC
TCTGGCTGATGCACTTCAGTCTCATGGTTTGAATTCTCTCCTTCTCCGGT
GTCGACTTCTGCATCTCTTTCTGTTCCGAAATCGTTGCTACTTTCAAATT
GATAAACTAGTTTCAAACTCCTCCATCTCGACTTGGAATTGCTGCTCATG
TCGACTGATAACT

BO13558.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 384 CG15345-RA 1..381 399..19 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1085 CG15345-RA 401..781 399..19 1905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397461..8397841 19..399 1905 100 Plus
Blast to na_te.dros performed 2015-02-12 04:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1401..1462 20..81 112 68.8 Plus

BO13558.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:44 Download gff for BO13558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-PA 1..384 15..399 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:41 Download gff for BO13558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-PA 1..384 15..399 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:44:32 Download gff for BO13558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..785 14..406 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:34 Download gff for BO13558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..785 14..406 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:34 Download gff for BO13558.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8397457..8397845 14..406 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:44:32 Download gff for BO13558.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291490..8291878 14..406 98   Plus

BO13558.complete Sequence

415 bp assembled on 2007-10-17

GenBank Submission: FJ632831

> BO13558.complete
GAAGTTATCAGTCGACATGAGCAGCAATTCCAAGTCGAGATGGAGGAGTT
TGAAACTAGTTTATCAATTTGAAAGTAGCAACGATTTCGGAACAGAAAGA
GATGCAGAAGTCGACACCGGAGAAGGAGAGAATTCAAACCATGAGACTGA
AGTGCATCAGCCAGAGCAAGAGTCCACCGAGGATGAGCGATTCCAATGCC
ACGTCAAGAATGAGTCCATCAACGAAGATCTCTCAGAGGAAGAAGATTAC
AGCGAACTGAGCACATTAAGACTGGAGGACATTGAAGAGAATGTCCTCGA
AGGTACTCCTCGAATCGTTGAGATGCAGGATGACAGCAAAGTGCAACCAA
ACCACAAATACGTCAATGTAAAAATGTTTATTTTATATACATATAAAGCA
AGCTTTCTAGACCAT

BO13558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 384 CG15345-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1085 CG15345-RA 401..781 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397461..8397841 397..17 1905 100 Minus
Blast to na_te.dros performed 2014-11-27 08:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1401..1462 396..335 112 68.8 Minus

BO13558.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:04 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:09 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 360..748 10..402 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:23 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 401..781 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:24 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 364..744 17..399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:49 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 401..781 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:49 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
X 8397459..8397841 17..399 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:23 Download gff for BO13558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291492..8291874 17..399 99   Minus

BO13558.pep Sequence

Translation from 16 to 415

> BO13558.pep
MSSNSKSRWRSLKLVYQFESSNDFGTERDAEVDTGEGENSNHETEVHQPE
QESTEDERFQCHVKNESINEDLSEEEDYSELSTLRLEDIEENVLEGTPRI
VEMQDDSKVQPNHKYVNVKMFILYTYKASFLDH

BO13558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 127 CG15345-PA 1..127 1..127 663 100 Plus