Clone Sequence Records
BO13559.3prime Sequence
875 bp (812 high quality bases) assembled on 2006-05-08
> BO13559.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTTCTTAAGTTTTTTCATTTTCTTCA
AGTTTTTCCGATAGGCGTATTTGTCTGTGCGCTTAATAACCTCGTTGAAC
TTCCTCTTGTTGAACTTCTGGAAGCTCTCGTCTTCTAACAACTCATTTAC
CAGCGACTGCTTCTTCTTGGACTTCTTTTCTTGGTAGTGATCCAAATGCG
AAGGTAGCACAGTACCGATTTGGAAAAATTTGGGCAGACTCTTAAGGTCG
TTCTTCTTGTAGAATTGCTTAGGGTTCAGAACCGATCGCATCTGAACTAT
TTTCAGTTCGTTTCGCATCTCGTCGGTGATCTCTGTGGCGGGCAGATTAA
ACCATCCCTTGCCCTTGGTCTTTGAGCGTTCAGCTCTGTTGATGATGGGT
TGCTGCCTCTTTCCCACGGTGGGCAGTGCATGCGCCTGTTCTAGTCCTGG
ATTCAAGGCCTGTTTCGTCCTCTTCATATTACTTTCCAGGTTTTCCTGCC
GCAGGTCCAGATGCGGAGCATCGTGGTTCAGTTCTGTTACCCGCTTCCGG
GGCACTACTTTCGGTTTGCTGGAGTTCTCCACTGCACTCTCGACCTTTTC
GCAGAGGTCCTCCAGCTGCTTGGCAACCTTGGATACCGGCTTCTTTCGGT
CAGGCAGGGAATTCACGACATCGAGCACTTCCTTGGAGTTCAACTTTAGG
CCAAAGAGCTCCACTGCGCCCTCATTTTGTTCCTCGTCCTCCTCGCTGTG
CGCGTCACTTTCTGTCAAGAGCAGCTCTTTGTTGTACACAATCTTCTTTT
GCTGCTGCTCGCCATTGAATTCCTGGCGTCCTGTTGTGTCTACCAAAAAA
ATAGAATCCATGTCCACTGATAACT
BO13559.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-PA | 846 | CG1142-RA | 1..843 | 861..19 | 4165 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-RA | 911 | CG1142-RA | 45..887 | 861..19 | 4185 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7473260..7473737 | 384..861 | 2360 | 99.6 | Plus |
| 3R | 32079331 | 3R | 7472482..7472847 | 19..384 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:26:47 has no hits.
BO13559.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:46 Download gff for
BO13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-PA | 1..846 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:43 Download gff for
BO13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-PA | 1..846 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:07 Download gff for
BO13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 45..890 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:50 Download gff for
BO13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 45..890 | 15..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:50 Download gff for
BO13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7472478..7472847 | 15..384 | 99 | <- | Plus |
| 3R | 7473261..7473737 | 385..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:07 Download gff for
BO13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3298200..3298569 | 15..384 | 99 | <- | Plus |
| arm_3R | 3298983..3299459 | 385..861 | 99 | | Plus |
BO13559.5prime Sequence
874 bp (770 high quality bases) assembled on 2006-05-08
> BO13559.5prime
GAAGTTATCAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGAC
GCCAGGAATTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAA
GAGCTGCTCCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACA
AAATGAGGGCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAG
TGCTCGATGTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAG
GTTGCCAAGCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGA
GAACTCCAGCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGA
ACCACGATGCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAAT
ATGAAGAGGACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGC
ACTGCCCACCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAAC
GCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATC
ACCGACGAGATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCT
GAACCCTAAGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAAT
TTTTCCAAATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAA
AAGAAGTCCAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAGACGA
GAGCTTCCAGAAGTTCAACAAGAGGAAGTTCAACGAGGTTATTAAGCGCA
CAGACAAATACGCCTATCGGAAAAACTTGAAGAAAATGAAAAAACTTAAG
AAAAATAAAGCAAGCTTTCTAAAC
BO13559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-PA | 846 | CG1142-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-RA | 911 | CG1142-RA | 45..887 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7473260..7473737 | 494..17 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 7472482..7472847 | 859..494 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:19:16 has no hits.
BO13559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:47 Download gff for
BO13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-PA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:45 Download gff for
BO13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-PA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:32 Download gff for
BO13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 39..890 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:28:25 Download gff for
BO13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 39..890 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:28:25 Download gff for
BO13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7472479..7472847 | 494..864 | 99 | <- | Minus |
| 3R | 7473261..7473743 | 9..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:32 Download gff for
BO13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3298201..3298569 | 494..864 | 99 | <- | Minus |
| arm_3R | 3298983..3299465 | 9..493 | 99 | | Minus |
BO13559.complete Sequence
877 bp assembled on 2006-10-11
GenBank Submission: FJ632832
> BO13559.complete
GAAGTTATCAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGAC
GCCAGGAATTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAA
GAGCTGCTCCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACA
AAATGAGGGCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAG
TGCTCGATGTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAG
GTTGCCAAGCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGA
GAACTCCAGCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGA
ACCACGATGCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAAT
ATGAAGAGGACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGC
ACTGCCCACCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAAC
GCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATC
ACCGACGAGATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCT
GAACCCTAAGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAAT
TTTTCCAAATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAA
AAGAAGTCCAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAGACGA
GAGCTTCCAGAAGTTCAACAAGAGGAAGTTCAACGAGGTTATTAAGCGCA
CAGACAAATACGCCTATCGGAAAAACTTGAAGAAAATGAAAAAACTTAAG
AAAAATAAAGCAAGCTTTCTAGACCAT
BO13559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-RA | 846 | CG1142-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-RA | 911 | CG1142-RA | 45..887 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7473260..7473737 | 494..17 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 7472482..7472847 | 859..494 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:31:04 has no hits.
BO13559.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:27 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:40 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 32..883 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:09 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 45..875 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:27 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 32..883 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:15 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 45..875 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:15 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7472494..7472847 | 494..847 | 100 | <- | Minus |
| 3R | 7473261..7473737 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:09 Download gff for
BO13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3298216..3298569 | 494..847 | 100 | <- | Minus |
| arm_3R | 3298983..3299459 | 17..493 | 100 | | Minus |
BO13559.pep Sequence
Translation from 16 to 877
> BO13559.pep
MDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAHSEEDEEQNEGAV
ELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCEKVESAVENSSKP
KVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNPGLEQAHALPTVG
KRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKIVQMRSVLNPKQF
YKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLVNELLEDESFQKF
NKRKFNEVIKRTDKYAYRKNLKKMKKLKKNKASFLDH
BO13559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-PA | 281 | CG1142-PA | 1..281 | 1..281 | 1435 | 100 | Plus |
