Clone Sequence Records
BO13561.3prime Sequence
835 bp (804 high quality bases) assembled on 2006-05-08
> BO13561.3prime
ATGGTCTAGAAAGCTTGCCGCCTGTTGCTGGCGGAACAGACGCCTCTGCG
TCTGGTGGGGTGGCTGGAGGTCGCTCTGCAGGATAGAGGCGAAGTGCTGC
TGCTTTAAGGAGCTGATTGTGGCGATCTTGCGGTGCCTGTTGGGCTGAGC
GGCGGCCAGACCAAGATGAAAGTAGGGCAGGTCTTCGTCCCGCGGCAGTG
GCATCATCTTGTCCTCCTCCACCGGGGAGCCATCGGGTCGCACCCGGATC
ACCAAAGGTCCGGTGAGGAATCTTTTGGACGGTTCTGAAGTCAGTGCGGC
GGCCATTGGGAGCTCACTGCTGGACTGCGGCCCGTAGCCGTAGGCCTTGT
CCATGTCCATGGCGTATTTGTGCTTCTGCTCGCCGCTCTCGAAGATTGGA
TTGGTGGCGGAGCCGGAGCTCTGGATGGGGTGGGCATGGGATGCTCCGTG
CGGAAGTTGCTGGCGCGTTAGGATGATCAGAGAGGACGCAGGAGGAGTTG
GCAGGGGCTGTTGGAGCGGCTGCCTCGTTGTCACCAGGCTGGCTCCGCTC
GGATGGTCCCCCATAATCGATGACCAGATCAGCTCGTTGGCATCGCGCTG
ATACGGATCTAGTGCCTCCAGCTGTACGTCGGAGAGCGTCTGCAGCTTGG
CGGACCCGTAACCGAGCAGGTTGTGCTTGCACTGGTTCACTGGGAGGCCT
CCGACGGCGGCTGTTGACTTGCAGTGCACGCTTACCAATTGAGCGAATGT
TGAGTAGAGGTGGGACATCTTCTCGTTGCGGGTCAGGAACTCCCAGATGG
GAATGGCCGATGACGAGCTGATCTGAATGTGGAAG
BO13561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2928-PA | 867 | Reg-5-RA | 48..864 | 835..19 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-5-RA | 1653 | CG2928-RA | 554..1370 | 835..19 | 4085 | 100 | Minus |
Reg-5-RB | 1781 | CG2928-RB | 939..1498 | 578..19 | 2800 | 100 | Minus |
Reg-5-RB | 1781 | CG2928-RB | 554..810 | 835..579 | 1285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24788291..24788850 | 19..578 | 2800 | 100 | Plus |
2R | 25286936 | 2R | 24788979..24789170 | 579..770 | 960 | 100 | Plus |
2R | 25286936 | 2R | 24792791..24792857 | 769..835 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:23:10 has no hits.
BO13561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:48 Download gff for
BO13561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-PA | 48..867 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:46 Download gff for
BO13561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2928-PA | 48..867 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:02 Download gff for
BO13561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 554..1374 | 14..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:16 Download gff for
BO13561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 554..1374 | 14..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:16 Download gff for
BO13561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24788287..24788850 | 14..578 | 99 | <- | Plus |
2R | 24788979..24789168 | 579..768 | 100 | <- | Plus |
2R | 24792791..24792857 | 769..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:02 Download gff for
BO13561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20675810..20676373 | 14..578 | 99 | <- | Plus |
arm_2R | 20676502..20676691 | 579..768 | 100 | <- | Plus |
arm_2R | 20680314..20680380 | 769..835 | 100 | | Plus |
BO13561.5prime Sequence
840 bp (791 high quality bases) assembled on 2006-05-08
> BO13561.5prime
GAAGTTATCAGTCGACATGACGACTGCGGCGAAAGTAATCTTGGCCTGCT
GCCTGCTGGGCGCCTTCCACATTCAGATCAGCTCGTCATCGGCCATTCCC
ATCTGGGAGTTCCTGACCCGCAACGAGAAGATGTCCCACCTCTACTCAAC
ATTCGCTCAATTGGTAAGCGTGCACTGCAAGTCAACAGCCGCCGTCGGAG
GCCTCCCAGTGAACCAGTGCAAGCACAACCTGCTCGGTTACGGGTCCGCC
AAGCTGCAGACGCTCTCCGACGTACAGCTGGAGGCACTAGATCCGTATCA
GCGCGATGCCAACGAGCTGATCTGGTCATCGATTATGGGGGACCATCCGA
GCGGAGCCAGCCTGGTGACAACGAGGCAGCCGCTCCAACAGCCCCTGCCA
ACTCCTCCTGCGTCCTCTCTGATCATCCTAACGCGCCAGCAACTTCCGCA
CGGAGCATCCCATGCCCACCCCATCCAGAGCTCCGGCTCCGCCACCAATC
CAATCTTCGAGAGCGGCGAGCAGAAGCACAAATACGCCATGGACATGGAC
AAGGCCTACGGCTACGGGCCGCAGTCCAGCAGTGAGCTCCCAATGGCCGC
CGCACTGACTTCAGAACCGTCCAAAAGATTCCTCACCGGACCTTTGGTGA
TCCGGGTGCGACCCGATGGCTCCCCGGTGGAGGAGGACAAGATGATGCCA
CTGCCGCGGGACGAAGACCTGCCCTACTTTCATCTTGGTCTGGCCGCCGC
TCAGCCCAACAGGCACCGCAAGATCGCCACAATCAGCTCCTTAAAGCAGC
AGCACTTCGCCTCTATCCTGCAGAGCGACCTCCAGCCACC
BO13561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2928-PA | 867 | Reg-5-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-5-RA | 1653 | CG2928-RA | 506..1330 | 16..840 | 4125 | 100 | Plus |
Reg-5-RB | 1781 | CG2928-RB | 939..1458 | 321..840 | 2600 | 100 | Plus |
Reg-5-RB | 1781 | CG2928-RB | 506..810 | 16..320 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24788331..24788850 | 840..321 | 2600 | 100 | Minus |
2R | 25286936 | 2R | 24788979..24789170 | 320..129 | 960 | 100 | Minus |
2R | 25286936 | 2R | 24792791..24792905 | 130..16 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:47:53 has no hits.
BO13561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:49 Download gff for
BO13561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:48 Download gff for
BO13561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2928-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:53 Download gff for
BO13561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 506..1330 | 16..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:22 Download gff for
BO13561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 506..1330 | 16..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:22 Download gff for
BO13561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24788331..24788850 | 321..840 | 100 | <- | Minus |
2R | 24788979..24789168 | 131..320 | 100 | <- | Minus |
2R | 24792791..24792905 | 16..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:53 Download gff for
BO13561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20675854..20676373 | 321..840 | 100 | <- | Minus |
arm_2R | 20676502..20676691 | 131..320 | 100 | <- | Minus |
arm_2R | 20680314..20680428 | 16..130 | 100 | | Minus |
BO13561.complete Sequence
898 bp assembled on 2006-10-11
GenBank Submission: FJ632833
> BO13561.complete
GAAGTTATCAGTCGACATGACGACTGCGGCGAAAGTAATCTTGGCCTGCT
GCCTGCTGGGCGCCTTCCACATTCAGATCAGCTCGTCATCGGCCATTCCC
ATCTGGGAGTTCCTGACCCGCAACGAGAAGATGTCCCACCTCTACTCAAC
ATTCGCTCAATTGGTAAGCGTGCACTGCAAGTCAACAGCCGCCGTCGGAG
GCCTCCCAGTGAACCAGTGCAAGCACAACCTGCTCGGTTACGGGTCCGCC
AAGCTGCAGACGCTCTCCGACGTACAGCTGGAGGCACTAGATCCGTATCA
GCGCGATGCCAACGAGCTGATCTGGTCATCGATTATGGGGGACCATCCGA
GCGGAGCCAGCCTGGTGACAACGAGGCAGCCGCTCCAACAGCCCCTGCCA
ACTCCTCCTGCGTCCTCTCTGATCATCCTAACGCGCCAGCAACTTCCGCA
CGGAGCATCCCATGCCCACCCCATCCAGAGCTCCGGCTCCGCCACCAATC
CAATCTTCGAGAGCGGCGAGCAGAAGCACAAATACGCCATGGACATGGAC
AAGGCCTACGGCTACGGGCCGCAGTCCAGCAGTGAGCTCCCAATGGCCGC
CGCACTGACTTCAGAACCGTCCAAAAGATTCCTCACCGGACCTTTGGTGA
TCCGGGTGCGACCCGATGGCTCCCCGGTGGAGGAGGACAAGATGATGCCA
CTGCCGCGGGACGAAGACCTGCCCTACTTTCATCTTGGTCTGGCCGCCGC
TCAGCCCAACAGGCACCGCAAGATCGCCACAATCAGCTCCTTAAAGCAGC
AGCACTTCGCCTCTATCCTGCAGAGCGACCTCCAGCCACCCCACCAGACG
CAGAGGCGTCTGTTCCGCCAGCAACAGGCGGCAAGCTTTCTAGACCAT
BO13561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-5-RA | 867 | CG2928-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Reg-5-RB | 549 | CG2928-PB | 1..546 | 335..880 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-5-RA | 1653 | CG2928-RA | 506..1370 | 16..880 | 4325 | 100 | Plus |
Reg-5-RB | 1781 | CG2928-RB | 939..1498 | 321..880 | 2800 | 100 | Plus |
Reg-5-RB | 1781 | CG2928-RB | 506..810 | 16..320 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24788291..24788850 | 880..321 | 2800 | 100 | Minus |
2R | 25286936 | 2R | 24788979..24789170 | 320..129 | 960 | 100 | Minus |
2R | 25286936 | 2R | 24792791..24792905 | 130..16 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:14 has no hits.
BO13561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:28 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:42 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 502..1370 | 16..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:13 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 507..1370 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:28 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 502..1370 | 16..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:09 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 507..1370 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:09 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24788289..24788850 | 321..882 | 99 | <- | Minus |
2R | 24788979..24789168 | 131..320 | 100 | <- | Minus |
2R | 24792791..24792904 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:13 Download gff for
BO13561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20675812..20676373 | 321..882 | 99 | <- | Minus |
arm_2R | 20676502..20676691 | 131..320 | 100 | <- | Minus |
arm_2R | 20680314..20680427 | 17..130 | 100 | | Minus |
BO13561.pep Sequence
Translation from 16 to 898
> BO13561.pep
MTTAAKVILACCLLGAFHIQISSSSAIPIWEFLTRNEKMSHLYSTFAQLV
SVHCKSTAAVGGLPVNQCKHNLLGYGSAKLQTLSDVQLEALDPYQRDANE
LIWSSIMGDHPSGASLVTTRQPLQQPLPTPPASSLIILTRQQLPHGASHA
HPIQSSGSATNPIFESGEQKHKYAMDMDKAYGYGPQSSSELPMAAALTSE
PSKRFLTGPLVIRVRPDGSPVEEDKMMPLPRDEDLPYFHLGLAAAQPNRH
RKIATISSLKQQHFASILQSDLQPPHQTQRRLFRQQQAASFLDH
BO13561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-5-PA | 288 | CG2928-PA | 1..288 | 1..288 | 1494 | 100 | Plus |
Reg-5-PB | 182 | CG2928-PB | 1..182 | 107..288 | 947 | 100 | Plus |