Clone BO13561 Report

Search the DGRC for BO13561

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptReg-5-RA
Protein status:BO13561.pep: validated full length
Sequenced Size:898

Clone Sequence Records

BO13561.3prime Sequence

835 bp (804 high quality bases) assembled on 2006-05-08

> BO13561.3prime
ATGGTCTAGAAAGCTTGCCGCCTGTTGCTGGCGGAACAGACGCCTCTGCG
TCTGGTGGGGTGGCTGGAGGTCGCTCTGCAGGATAGAGGCGAAGTGCTGC
TGCTTTAAGGAGCTGATTGTGGCGATCTTGCGGTGCCTGTTGGGCTGAGC
GGCGGCCAGACCAAGATGAAAGTAGGGCAGGTCTTCGTCCCGCGGCAGTG
GCATCATCTTGTCCTCCTCCACCGGGGAGCCATCGGGTCGCACCCGGATC
ACCAAAGGTCCGGTGAGGAATCTTTTGGACGGTTCTGAAGTCAGTGCGGC
GGCCATTGGGAGCTCACTGCTGGACTGCGGCCCGTAGCCGTAGGCCTTGT
CCATGTCCATGGCGTATTTGTGCTTCTGCTCGCCGCTCTCGAAGATTGGA
TTGGTGGCGGAGCCGGAGCTCTGGATGGGGTGGGCATGGGATGCTCCGTG
CGGAAGTTGCTGGCGCGTTAGGATGATCAGAGAGGACGCAGGAGGAGTTG
GCAGGGGCTGTTGGAGCGGCTGCCTCGTTGTCACCAGGCTGGCTCCGCTC
GGATGGTCCCCCATAATCGATGACCAGATCAGCTCGTTGGCATCGCGCTG
ATACGGATCTAGTGCCTCCAGCTGTACGTCGGAGAGCGTCTGCAGCTTGG
CGGACCCGTAACCGAGCAGGTTGTGCTTGCACTGGTTCACTGGGAGGCCT
CCGACGGCGGCTGTTGACTTGCAGTGCACGCTTACCAATTGAGCGAATGT
TGAGTAGAGGTGGGACATCTTCTCGTTGCGGGTCAGGAACTCCCAGATGG
GAATGGCCGATGACGAGCTGATCTGAATGTGGAAG

BO13561.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2928-PA 867 Reg-5-RA 48..864 835..19 4085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-5-RA 1653 CG2928-RA 554..1370 835..19 4085 100 Minus
Reg-5-RB 1781 CG2928-RB 939..1498 578..19 2800 100 Minus
Reg-5-RB 1781 CG2928-RB 554..810 835..579 1285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24788291..24788850 19..578 2800 100 Plus
2R 25286936 2R 24788979..24789170 579..770 960 100 Plus
2R 25286936 2R 24792791..24792857 769..835 335 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:23:10 has no hits.

BO13561.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:48 Download gff for BO13561.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-PA 48..867 15..835 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:46 Download gff for BO13561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2928-PA 48..867 15..835 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:02 Download gff for BO13561.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 554..1374 14..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:16 Download gff for BO13561.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 554..1374 14..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:16 Download gff for BO13561.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24788287..24788850 14..578 99 <- Plus
2R 24788979..24789168 579..768 100 <- Plus
2R 24792791..24792857 769..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:02 Download gff for BO13561.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20675810..20676373 14..578 99 <- Plus
arm_2R 20676502..20676691 579..768 100 <- Plus
arm_2R 20680314..20680380 769..835 100   Plus

BO13561.5prime Sequence

840 bp (791 high quality bases) assembled on 2006-05-08

> BO13561.5prime
GAAGTTATCAGTCGACATGACGACTGCGGCGAAAGTAATCTTGGCCTGCT
GCCTGCTGGGCGCCTTCCACATTCAGATCAGCTCGTCATCGGCCATTCCC
ATCTGGGAGTTCCTGACCCGCAACGAGAAGATGTCCCACCTCTACTCAAC
ATTCGCTCAATTGGTAAGCGTGCACTGCAAGTCAACAGCCGCCGTCGGAG
GCCTCCCAGTGAACCAGTGCAAGCACAACCTGCTCGGTTACGGGTCCGCC
AAGCTGCAGACGCTCTCCGACGTACAGCTGGAGGCACTAGATCCGTATCA
GCGCGATGCCAACGAGCTGATCTGGTCATCGATTATGGGGGACCATCCGA
GCGGAGCCAGCCTGGTGACAACGAGGCAGCCGCTCCAACAGCCCCTGCCA
ACTCCTCCTGCGTCCTCTCTGATCATCCTAACGCGCCAGCAACTTCCGCA
CGGAGCATCCCATGCCCACCCCATCCAGAGCTCCGGCTCCGCCACCAATC
CAATCTTCGAGAGCGGCGAGCAGAAGCACAAATACGCCATGGACATGGAC
AAGGCCTACGGCTACGGGCCGCAGTCCAGCAGTGAGCTCCCAATGGCCGC
CGCACTGACTTCAGAACCGTCCAAAAGATTCCTCACCGGACCTTTGGTGA
TCCGGGTGCGACCCGATGGCTCCCCGGTGGAGGAGGACAAGATGATGCCA
CTGCCGCGGGACGAAGACCTGCCCTACTTTCATCTTGGTCTGGCCGCCGC
TCAGCCCAACAGGCACCGCAAGATCGCCACAATCAGCTCCTTAAAGCAGC
AGCACTTCGCCTCTATCCTGCAGAGCGACCTCCAGCCACC

BO13561.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2928-PA 867 Reg-5-RA 1..824 17..840 4120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-5-RA 1653 CG2928-RA 506..1330 16..840 4125 100 Plus
Reg-5-RB 1781 CG2928-RB 939..1458 321..840 2600 100 Plus
Reg-5-RB 1781 CG2928-RB 506..810 16..320 1525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24788331..24788850 840..321 2600 100 Minus
2R 25286936 2R 24788979..24789170 320..129 960 100 Minus
2R 25286936 2R 24792791..24792905 130..16 575 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:47:53 has no hits.

BO13561.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:49 Download gff for BO13561.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:48 Download gff for BO13561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2928-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:53 Download gff for BO13561.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 506..1330 16..840 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:22 Download gff for BO13561.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 506..1330 16..840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:22 Download gff for BO13561.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24788331..24788850 321..840 100 <- Minus
2R 24788979..24789168 131..320 100 <- Minus
2R 24792791..24792905 16..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:53 Download gff for BO13561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20675854..20676373 321..840 100 <- Minus
arm_2R 20676502..20676691 131..320 100 <- Minus
arm_2R 20680314..20680428 16..130 100   Minus

BO13561.complete Sequence

898 bp assembled on 2006-10-11

GenBank Submission: FJ632833

> BO13561.complete
GAAGTTATCAGTCGACATGACGACTGCGGCGAAAGTAATCTTGGCCTGCT
GCCTGCTGGGCGCCTTCCACATTCAGATCAGCTCGTCATCGGCCATTCCC
ATCTGGGAGTTCCTGACCCGCAACGAGAAGATGTCCCACCTCTACTCAAC
ATTCGCTCAATTGGTAAGCGTGCACTGCAAGTCAACAGCCGCCGTCGGAG
GCCTCCCAGTGAACCAGTGCAAGCACAACCTGCTCGGTTACGGGTCCGCC
AAGCTGCAGACGCTCTCCGACGTACAGCTGGAGGCACTAGATCCGTATCA
GCGCGATGCCAACGAGCTGATCTGGTCATCGATTATGGGGGACCATCCGA
GCGGAGCCAGCCTGGTGACAACGAGGCAGCCGCTCCAACAGCCCCTGCCA
ACTCCTCCTGCGTCCTCTCTGATCATCCTAACGCGCCAGCAACTTCCGCA
CGGAGCATCCCATGCCCACCCCATCCAGAGCTCCGGCTCCGCCACCAATC
CAATCTTCGAGAGCGGCGAGCAGAAGCACAAATACGCCATGGACATGGAC
AAGGCCTACGGCTACGGGCCGCAGTCCAGCAGTGAGCTCCCAATGGCCGC
CGCACTGACTTCAGAACCGTCCAAAAGATTCCTCACCGGACCTTTGGTGA
TCCGGGTGCGACCCGATGGCTCCCCGGTGGAGGAGGACAAGATGATGCCA
CTGCCGCGGGACGAAGACCTGCCCTACTTTCATCTTGGTCTGGCCGCCGC
TCAGCCCAACAGGCACCGCAAGATCGCCACAATCAGCTCCTTAAAGCAGC
AGCACTTCGCCTCTATCCTGCAGAGCGACCTCCAGCCACCCCACCAGACG
CAGAGGCGTCTGTTCCGCCAGCAACAGGCGGCAAGCTTTCTAGACCAT

BO13561.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-5-RA 867 CG2928-PA 1..864 17..880 4320 100 Plus
Reg-5-RB 549 CG2928-PB 1..546 335..880 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-5-RA 1653 CG2928-RA 506..1370 16..880 4325 100 Plus
Reg-5-RB 1781 CG2928-RB 939..1498 321..880 2800 100 Plus
Reg-5-RB 1781 CG2928-RB 506..810 16..320 1525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24788291..24788850 880..321 2800 100 Minus
2R 25286936 2R 24788979..24789170 320..129 960 100 Minus
2R 25286936 2R 24792791..24792905 130..16 575 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:34:14 has no hits.

BO13561.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:28 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 1..867 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:42 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 502..1370 16..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:13 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 507..1370 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:28 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 502..1370 16..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:09 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 507..1370 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:09 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24788289..24788850 321..882 99 <- Minus
2R 24788979..24789168 131..320 100 <- Minus
2R 24792791..24792904 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:13 Download gff for BO13561.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20675812..20676373 321..882 99 <- Minus
arm_2R 20676502..20676691 131..320 100 <- Minus
arm_2R 20680314..20680427 17..130 100   Minus

BO13561.pep Sequence

Translation from 16 to 898

> BO13561.pep
MTTAAKVILACCLLGAFHIQISSSSAIPIWEFLTRNEKMSHLYSTFAQLV
SVHCKSTAAVGGLPVNQCKHNLLGYGSAKLQTLSDVQLEALDPYQRDANE
LIWSSIMGDHPSGASLVTTRQPLQQPLPTPPASSLIILTRQQLPHGASHA
HPIQSSGSATNPIFESGEQKHKYAMDMDKAYGYGPQSSSELPMAAALTSE
PSKRFLTGPLVIRVRPDGSPVEEDKMMPLPRDEDLPYFHLGLAAAQPNRH
RKIATISSLKQQHFASILQSDLQPPHQTQRRLFRQQQAASFLDH

BO13561.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-5-PA 288 CG2928-PA 1..288 1..288 1494 100 Plus
Reg-5-PB 182 CG2928-PB 1..182 107..288 947 100 Plus