Clone BO13562 Report

Search the DGRC for BO13562

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptZnT35C-RA
Protein status:BO13562.pep: validated full length
Sequenced Size:1450

Clone Sequence Records

BO13562.3prime Sequence

896 bp (799 high quality bases) assembled on 2006-05-08

> BO13562.3prime
ATGGTCTAGAAAGCTTGCCTTCTCGGGCACATTGCACTGCAGGCAGCTCT
CCATTTGGGCGGTATAGTCCTCGATCTGGATGGTGGTCTCAAAGAAGTTA
TAGCGCAAATGAACCGCCGATGTGGCCGCATCCAGGATCCTCTTCGGATT
CGCATTTTCAGCAATGGCCAAATGTGCAGATAGCGCCACTTTATTAATGC
TCAGCGCCCAGATGCGCAAATTGTGCACCCGCTCAACGCCCTCGATGCCT
TGGAAAATCTGCAGTACCTCGGCGTAGTGCATATAGTTGGGAGTCCCCTC
CATGAGCACCAGCAACGCATCCTTCATGATCGTGAACGTGGTGAAGAGCA
CAATGATGGAGAACACAAACGTGCAAATGGGATCAACGATGGAGTACTCT
GGCCAAAAGTAAATCACGCCAGCGGCGACAAAAACTCCCACGCTCTGGAT
GACATCGCCAATCACATGGATGAGGGCTGCCCGGACATTCATGTTGACGG
CCTCGCGTCCAACCGGTCCGCCGTGATGATGTGATCCGGGTGCCGTTTCG
GCCAGAACGGCAGCAATTTCCAAATCCAGTGTGGGATCGACCAACTTGGT
ATTTTGGTAGGAGAACGTTGGCAGCCCGCCGCCAGGCAATTCGGCATCCT
CGGGCGCGTAGGCCACACCGCCCTCAATACGCTGGCTGGGCGAATCGGAG
CATGGTGTGGATGTGGCCTGCACATGGGATGCGTTCTTGGAACCACCATG
GCTGTGACCATGCCCACCGCCCAGGCCATGCGAATGGCCATGCTGCAGCT
GAACGCCCATGATGACATTCACCCATATGGCCAGGCCGGATGTGATCAGC
ATGATCTTCGCATTCACCTCGTAGTCGCCGCTGATGAGTCGTCCGA

BO13562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3994-PA 1419 CG3994-RA 539..1416 896..19 4365 99.8 Minus
CG3994-PB 1323 CG3994-RB 443..1320 896..19 4365 99.8 Minus
CG33911-PA 1746 CG33911-RA 1093..1157 832..896 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RB 1812 CG3994-RB 731..1608 896..19 4375 99.9 Minus
ZnT35C-RA 1740 CG3994-RA 659..1536 896..19 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15229850..15230354 307..811 2525 100 Plus
2L 23513712 2L 15229544..15229692 162..310 745 100 Plus
2L 23513712 2L 15228932..15229075 19..162 720 100 Plus
2L 23513712 2L 15236605..15236689 812..896 410 98.8 Plus
Blast to na_te.dros performed on 2015-02-03 07:10:30 has no hits.

BO13562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:50 Download gff for BO13562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3994-PA 540..1419 18..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:49 Download gff for BO13562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3994-PB 444..1323 18..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:16 Download gff for BO13562.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 660..1543 11..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:39 Download gff for BO13562.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 660..1543 11..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:39 Download gff for BO13562.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15228925..15229074 11..161 97 <- Plus
2L 15229544..15229691 162..309 100 <- Plus
2L 15229853..15230354 310..811 100 <- Plus
2L 15236605..15236688 812..895 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:16 Download gff for BO13562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15228925..15229074 11..161 97 <- Plus
arm_2L 15229544..15229691 162..309 100 <- Plus
arm_2L 15229853..15230354 310..811 100 <- Plus
arm_2L 15236605..15236688 812..895 98   Plus

BO13562.5prime Sequence

900 bp (774 high quality bases) assembled on 2006-05-08

> BO13562.5prime
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGC
CATGGTGGTTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATG
CTCCGATTCGCCCAGCCAGCGTATTGAAGGGCGGTGTGGCCTACGCGCCC
GAGGATGCCGAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAT
ACCAAGTTGGTCGATCCACACTGGATTTTGGAAATTGCTGCCGTTCTGGC

BO13562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3994-PA 1419 CG3994-RA 1..761 17..777 3805 100 Plus
CG3994-PB 1323 CG3994-RB 115..665 227..777 2755 100 Plus
CG33911-PA 1746 CG33911-RA 1093..1253 619..459 805 100 Minus
CG3994-PA 1419 CG3994-RA 761..832 778..849 360 100 Plus
CG3994-PB 1323 CG3994-RB 665..736 778..849 360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RA 1740 CG3994-RA 121..1004 17..900 4330 99.5 Plus
ZnT35C-RB 1812 CG3994-RB 403..1076 227..900 3280 99.4 Plus
ZnT33D-RB 2257 CG31860-RB 1168..1484 356..672 265 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15230094..15230354 900..640 1115 98.5 Minus
2L 23513712 2L 15236605..15236785 639..459 905 100 Minus
2L 23513712 2L 15246174..15246352 227..49 895 100 Minus
2L 23513712 2L 15240464..15240586 460..338 615 100 Minus
2L 23513712 2L 15241409..15241523 340..226 575 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:56:47 has no hits.

BO13562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:51 Download gff for BO13562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3994-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:50 Download gff for BO13562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3994-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:03 Download gff for BO13562.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..1004 17..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:48 Download gff for BO13562.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..1004 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:48 Download gff for BO13562.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15241411..15241521 228..338 100 <- Minus
2L 15240465..15240585 339..459 100 <- Minus
2L 15246174..15246352 49..227 100 <- Minus
2L 15247563..15247594 17..48 100   Minus
2L 15230094..15230354 640..900 98 <- Minus
2L 15236605..15236784 460..639 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:03 Download gff for BO13562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15241411..15241521 228..338 100 <- Minus
arm_2L 15230094..15230354 640..900 98 <- Minus
arm_2L 15236605..15236784 460..639 100 <- Minus
arm_2L 15240465..15240585 339..459 100 <- Minus
arm_2L 15246174..15246352 49..227 100 <- Minus
arm_2L 15247563..15247594 17..48 100   Minus

BO13562.complete Sequence

1450 bp assembled on 2006-10-11

GenBank Submission: FJ632834

> BO13562.complete
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGC
CATGGTGGTTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATG
CTCCGATTCGCCCAGCCAGCGTATTGAGGGCGGTGTGGCCTACGCGCCCG
AGGATGCCGAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAAT
ACCAAGTTGGTCGATCCCACACTGGATTTGGAAATTGCTGCCGTTCTGGC
CGAAACGGCACCCGGATCACATCATCACGGCGGACCGGTTGGACGCGAGG
CCGTCAACATGAATGTCCGGGCAGCCCTCATCCATGTGATTGGCGATGTC
ATCCAGAGCGTGGGAGTTTTTGTCGCCGCTGGCGTGATTTACTTTTGGCC
AGAGTACTCCATCGTTGATCCCATTTGCACGTTTGTGTTCTCCATCATTG
TGCTCTTCACCACGTTCACGATCATGAAGGATGCGTTGCTGGTGCTCATG
GAGGGGACTCCCAACTATATGCACTACGCCGAGGTACTGCAGATTTTCCA
AGGCATCGAGGGCGTTGAGCGGGTGCACAATTTGCGCATCTGGGCGCTGA
GCATTAATAAAGTGGCGCTATCTGCACATTTGGCCATTGCTGAAAATGCG
AATCCGAAGAGGATCCTGGATGCGGCCACATCGGCGGTTCATTTGCGCTA
TAACTTCTTTGAGACCACCATCCAGATCGAGGACTATACCGCCCAAATGG
AGAGCTGCCTGCAGTGCAATGTGCCCGAGAAGGCAAGCTTTCTAGACCAT

BO13562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RA 1419 CG3994-PA 1..1416 17..1432 7080 100 Plus
ZnT35C-RB 1323 CG3994-PB 115..1320 227..1432 6030 100 Plus
ZnT33D-RB 2106 CG31860-PB 1090..1406 356..672 250 71.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RA 1740 CG3994-RA 121..1536 17..1432 7080 100 Plus
ZnT35C-RB 1812 CG3994-RB 403..1608 227..1432 6030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15229850..15230354 1144..640 2525 100 Minus
2L 23513712 2L 15236605..15236785 639..459 905 100 Minus
2L 23513712 2L 15246174..15246352 227..49 895 100 Minus
2L 23513712 2L 15229544..15229692 1289..1141 745 100 Minus
2L 23513712 2L 15228932..15229075 1432..1289 720 100 Minus
2L 23513712 2L 15240464..15240586 460..338 615 100 Minus
2L 23513712 2L 15241409..15241523 340..226 575 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:13:43 has no hits.

BO13562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:29 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG3994-RA 1..1419 17..1433 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:53 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 183..1598 17..1434 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:56 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..1536 17..1434 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:30 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG3994-RA 183..1605 17..1440 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:43 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..1536 17..1434 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:43 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15246174..15246352 49..227 100 <- Minus
2L 15228930..15229074 1290..1434 98 <- Minus
2L 15229544..15229691 1142..1289 100 <- Minus
2L 15229853..15230354 640..1141 100 <- Minus
2L 15236605..15236784 460..639 100 <- Minus
2L 15240465..15240585 339..459 100 <- Minus
2L 15241411..15241521 228..338 100 <- Minus
2L 15247563..15247594 17..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:56 Download gff for BO13562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15240465..15240585 339..459 100 <- Minus
arm_2L 15241411..15241521 228..338 100 <- Minus
arm_2L 15228930..15229074 1290..1434 98 <- Minus
arm_2L 15229544..15229691 1142..1289 100 <- Minus
arm_2L 15229853..15230354 640..1141 100 <- Minus
arm_2L 15236605..15236784 460..639 100 <- Minus
arm_2L 15246174..15246352 49..227 100 <- Minus
arm_2L 15247563..15247594 17..48 100   Minus

BO13562.pep Sequence

Translation from 16 to 1450

> BO13562.pep
MSRNEDTPIAKRDSGRTRRSNYGTAPSFHLMEQGQPGVNVVAGNGNNNHP
ATPATPAQIFCLHGRSNNVEVRDHCHRARSEGVDVKARRKLIIASILCLV
FMIAEIVGGVLSNSLAIATDAAHLLTDFASFMISLFAIWIAGRPSTQRMS
FGWYRAEVIGAMASVFMIWVITGILVWLAIGRLISGDYEVNAKIMLITSG
LAILVNVIMGVQLQHGHSHGLGGGHGHSHGGSKNASHVQATSTPCSDSPS
QRIEGGVAYAPEDAELPGGGLPTFSYQNTKLVDPTLDLEIAAVLAETAPG
SHHHGGPVGREAVNMNVRAALIHVIGDVIQSVGVFVAAGVIYFWPEYSIV
DPICTFVFSIIVLFTTFTIMKDALLVLMEGTPNYMHYAEVLQIFQGIEGV
ERVHNLRIWALSINKVALSAHLAIAENANPKRILDAATSAVHLRYNFFET
TIQIEDYTAQMESCLQCNVPEKASFLDH

BO13562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-PA 472 CG3994-PA 1..472 1..472 2447 100 Plus
ZnT35C-PB 440 CG3994-PB 39..440 71..472 2069 100 Plus
ZnT33D-PB 701 CG31860-PB 323..668 74..474 997 53.2 Plus
ZnT41F-PD 498 CG11163-PD 128..497 86..458 608 36.6 Plus
ZnT41F-PC 498 CG11163-PC 128..497 86..458 608 36.6 Plus