Clone Sequence Records
BO13562.3prime Sequence
896 bp (799 high quality bases) assembled on 2006-05-08
> BO13562.3prime
ATGGTCTAGAAAGCTTGCCTTCTCGGGCACATTGCACTGCAGGCAGCTCT
CCATTTGGGCGGTATAGTCCTCGATCTGGATGGTGGTCTCAAAGAAGTTA
TAGCGCAAATGAACCGCCGATGTGGCCGCATCCAGGATCCTCTTCGGATT
CGCATTTTCAGCAATGGCCAAATGTGCAGATAGCGCCACTTTATTAATGC
TCAGCGCCCAGATGCGCAAATTGTGCACCCGCTCAACGCCCTCGATGCCT
TGGAAAATCTGCAGTACCTCGGCGTAGTGCATATAGTTGGGAGTCCCCTC
CATGAGCACCAGCAACGCATCCTTCATGATCGTGAACGTGGTGAAGAGCA
CAATGATGGAGAACACAAACGTGCAAATGGGATCAACGATGGAGTACTCT
GGCCAAAAGTAAATCACGCCAGCGGCGACAAAAACTCCCACGCTCTGGAT
GACATCGCCAATCACATGGATGAGGGCTGCCCGGACATTCATGTTGACGG
CCTCGCGTCCAACCGGTCCGCCGTGATGATGTGATCCGGGTGCCGTTTCG
GCCAGAACGGCAGCAATTTCCAAATCCAGTGTGGGATCGACCAACTTGGT
ATTTTGGTAGGAGAACGTTGGCAGCCCGCCGCCAGGCAATTCGGCATCCT
CGGGCGCGTAGGCCACACCGCCCTCAATACGCTGGCTGGGCGAATCGGAG
CATGGTGTGGATGTGGCCTGCACATGGGATGCGTTCTTGGAACCACCATG
GCTGTGACCATGCCCACCGCCCAGGCCATGCGAATGGCCATGCTGCAGCT
GAACGCCCATGATGACATTCACCCATATGGCCAGGCCGGATGTGATCAGC
ATGATCTTCGCATTCACCTCGTAGTCGCCGCTGATGAGTCGTCCGA
BO13562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3994-PA | 1419 | CG3994-RA | 539..1416 | 896..19 | 4365 | 99.8 | Minus |
CG3994-PB | 1323 | CG3994-RB | 443..1320 | 896..19 | 4365 | 99.8 | Minus |
CG33911-PA | 1746 | CG33911-RA | 1093..1157 | 832..896 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RB | 1812 | CG3994-RB | 731..1608 | 896..19 | 4375 | 99.9 | Minus |
ZnT35C-RA | 1740 | CG3994-RA | 659..1536 | 896..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15229850..15230354 | 307..811 | 2525 | 100 | Plus |
2L | 23513712 | 2L | 15229544..15229692 | 162..310 | 745 | 100 | Plus |
2L | 23513712 | 2L | 15228932..15229075 | 19..162 | 720 | 100 | Plus |
2L | 23513712 | 2L | 15236605..15236689 | 812..896 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:10:30 has no hits.
BO13562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:50 Download gff for
BO13562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-PA | 540..1419 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:49 Download gff for
BO13562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-PB | 444..1323 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:16 Download gff for
BO13562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 660..1543 | 11..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:39 Download gff for
BO13562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 660..1543 | 11..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:39 Download gff for
BO13562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15228925..15229074 | 11..161 | 97 | <- | Plus |
2L | 15229544..15229691 | 162..309 | 100 | <- | Plus |
2L | 15229853..15230354 | 310..811 | 100 | <- | Plus |
2L | 15236605..15236688 | 812..895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:16 Download gff for
BO13562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15228925..15229074 | 11..161 | 97 | <- | Plus |
arm_2L | 15229544..15229691 | 162..309 | 100 | <- | Plus |
arm_2L | 15229853..15230354 | 310..811 | 100 | <- | Plus |
arm_2L | 15236605..15236688 | 812..895 | 98 | | Plus |
BO13562.5prime Sequence
900 bp (774 high quality bases) assembled on 2006-05-08
> BO13562.5prime
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGC
CATGGTGGTTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATG
CTCCGATTCGCCCAGCCAGCGTATTGAAGGGCGGTGTGGCCTACGCGCCC
GAGGATGCCGAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAT
ACCAAGTTGGTCGATCCACACTGGATTTTGGAAATTGCTGCCGTTCTGGC
BO13562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3994-PA | 1419 | CG3994-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
CG3994-PB | 1323 | CG3994-RB | 115..665 | 227..777 | 2755 | 100 | Plus |
CG33911-PA | 1746 | CG33911-RA | 1093..1253 | 619..459 | 805 | 100 | Minus |
CG3994-PA | 1419 | CG3994-RA | 761..832 | 778..849 | 360 | 100 | Plus |
CG3994-PB | 1323 | CG3994-RB | 665..736 | 778..849 | 360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RA | 1740 | CG3994-RA | 121..1004 | 17..900 | 4330 | 99.5 | Plus |
ZnT35C-RB | 1812 | CG3994-RB | 403..1076 | 227..900 | 3280 | 99.4 | Plus |
ZnT33D-RB | 2257 | CG31860-RB | 1168..1484 | 356..672 | 265 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15230094..15230354 | 900..640 | 1115 | 98.5 | Minus |
2L | 23513712 | 2L | 15236605..15236785 | 639..459 | 905 | 100 | Minus |
2L | 23513712 | 2L | 15246174..15246352 | 227..49 | 895 | 100 | Minus |
2L | 23513712 | 2L | 15240464..15240586 | 460..338 | 615 | 100 | Minus |
2L | 23513712 | 2L | 15241409..15241523 | 340..226 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:56:47 has no hits.
BO13562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:51 Download gff for
BO13562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:50 Download gff for
BO13562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:03 Download gff for
BO13562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..1004 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:48 Download gff for
BO13562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..1004 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:48 Download gff for
BO13562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
2L | 15247563..15247594 | 17..48 | 100 | | Minus |
2L | 15230094..15230354 | 640..900 | 98 | <- | Minus |
2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:03 Download gff for
BO13562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
arm_2L | 15230094..15230354 | 640..900 | 98 | <- | Minus |
arm_2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
arm_2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
arm_2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
arm_2L | 15247563..15247594 | 17..48 | 100 | | Minus |
BO13562.complete Sequence
1450 bp assembled on 2006-10-11
GenBank Submission: FJ632834
> BO13562.complete
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGC
CATGGTGGTTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATG
CTCCGATTCGCCCAGCCAGCGTATTGAGGGCGGTGTGGCCTACGCGCCCG
AGGATGCCGAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAAT
ACCAAGTTGGTCGATCCCACACTGGATTTGGAAATTGCTGCCGTTCTGGC
CGAAACGGCACCCGGATCACATCATCACGGCGGACCGGTTGGACGCGAGG
CCGTCAACATGAATGTCCGGGCAGCCCTCATCCATGTGATTGGCGATGTC
ATCCAGAGCGTGGGAGTTTTTGTCGCCGCTGGCGTGATTTACTTTTGGCC
AGAGTACTCCATCGTTGATCCCATTTGCACGTTTGTGTTCTCCATCATTG
TGCTCTTCACCACGTTCACGATCATGAAGGATGCGTTGCTGGTGCTCATG
GAGGGGACTCCCAACTATATGCACTACGCCGAGGTACTGCAGATTTTCCA
AGGCATCGAGGGCGTTGAGCGGGTGCACAATTTGCGCATCTGGGCGCTGA
GCATTAATAAAGTGGCGCTATCTGCACATTTGGCCATTGCTGAAAATGCG
AATCCGAAGAGGATCCTGGATGCGGCCACATCGGCGGTTCATTTGCGCTA
TAACTTCTTTGAGACCACCATCCAGATCGAGGACTATACCGCCCAAATGG
AGAGCTGCCTGCAGTGCAATGTGCCCGAGAAGGCAAGCTTTCTAGACCAT
BO13562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RA | 1419 | CG3994-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
ZnT35C-RB | 1323 | CG3994-PB | 115..1320 | 227..1432 | 6030 | 100 | Plus |
ZnT33D-RB | 2106 | CG31860-PB | 1090..1406 | 356..672 | 250 | 71.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RA | 1740 | CG3994-RA | 121..1536 | 17..1432 | 7080 | 100 | Plus |
ZnT35C-RB | 1812 | CG3994-RB | 403..1608 | 227..1432 | 6030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15229850..15230354 | 1144..640 | 2525 | 100 | Minus |
2L | 23513712 | 2L | 15236605..15236785 | 639..459 | 905 | 100 | Minus |
2L | 23513712 | 2L | 15246174..15246352 | 227..49 | 895 | 100 | Minus |
2L | 23513712 | 2L | 15229544..15229692 | 1289..1141 | 745 | 100 | Minus |
2L | 23513712 | 2L | 15228932..15229075 | 1432..1289 | 720 | 100 | Minus |
2L | 23513712 | 2L | 15240464..15240586 | 460..338 | 615 | 100 | Minus |
2L | 23513712 | 2L | 15241409..15241523 | 340..226 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:13:43 has no hits.
BO13562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:29 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-RA | 1..1419 | 17..1433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:53 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 183..1598 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:56 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..1536 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:30 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-RA | 183..1605 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:43 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..1536 | 17..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:43 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
2L | 15228930..15229074 | 1290..1434 | 98 | <- | Minus |
2L | 15229544..15229691 | 1142..1289 | 100 | <- | Minus |
2L | 15229853..15230354 | 640..1141 | 100 | <- | Minus |
2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
2L | 15247563..15247594 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:56 Download gff for
BO13562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
arm_2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
arm_2L | 15228930..15229074 | 1290..1434 | 98 | <- | Minus |
arm_2L | 15229544..15229691 | 1142..1289 | 100 | <- | Minus |
arm_2L | 15229853..15230354 | 640..1141 | 100 | <- | Minus |
arm_2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
arm_2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
arm_2L | 15247563..15247594 | 17..48 | 100 | | Minus |
BO13562.pep Sequence
Translation from 16 to 1450
> BO13562.pep
MSRNEDTPIAKRDSGRTRRSNYGTAPSFHLMEQGQPGVNVVAGNGNNNHP
ATPATPAQIFCLHGRSNNVEVRDHCHRARSEGVDVKARRKLIIASILCLV
FMIAEIVGGVLSNSLAIATDAAHLLTDFASFMISLFAIWIAGRPSTQRMS
FGWYRAEVIGAMASVFMIWVITGILVWLAIGRLISGDYEVNAKIMLITSG
LAILVNVIMGVQLQHGHSHGLGGGHGHSHGGSKNASHVQATSTPCSDSPS
QRIEGGVAYAPEDAELPGGGLPTFSYQNTKLVDPTLDLEIAAVLAETAPG
SHHHGGPVGREAVNMNVRAALIHVIGDVIQSVGVFVAAGVIYFWPEYSIV
DPICTFVFSIIVLFTTFTIMKDALLVLMEGTPNYMHYAEVLQIFQGIEGV
ERVHNLRIWALSINKVALSAHLAIAENANPKRILDAATSAVHLRYNFFET
TIQIEDYTAQMESCLQCNVPEKASFLDH
BO13562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-PA | 472 | CG3994-PA | 1..472 | 1..472 | 2447 | 100 | Plus |
ZnT35C-PB | 440 | CG3994-PB | 39..440 | 71..472 | 2069 | 100 | Plus |
ZnT33D-PB | 701 | CG31860-PB | 323..668 | 74..474 | 997 | 53.2 | Plus |
ZnT41F-PD | 498 | CG11163-PD | 128..497 | 86..458 | 608 | 36.6 | Plus |
ZnT41F-PC | 498 | CG11163-PC | 128..497 | 86..458 | 608 | 36.6 | Plus |