Clone Sequence Records
BO13564.3prime Sequence
894 bp (763 high quality bases) assembled on 2006-05-08
> BO13564.3prime
ATGGTCTAGAAAGCTTGCTTTGCCCGCATACATGGGGTTCTTGAAGGTGG
ACGTGGCCTGCTTGTAGATGGGATTCTCGCCCGTATCCCACTTGGCGTTC
ATGCGCTCCTTCTCGAAGCGAGCGAACTCCCGCCGATCGTGGATCGTAGT
GAGCAGCTTCCACAGCAGGAGAATGGCCAGACCGACCAGGACAATGGCGG
CAATTACGCCCATAACGATGCCCAACATGAAAACCTTGGCCGGACACTCC
TTATTCTCCTGGGCATACACATGCAGCTCACCCTGTTCGCTGTACTTGAA
CATAAACTTGCAGTCGTCCTCGTCGAAGAATTTGCACATCTGCTCGTCCT
TGGTCTCATCGATCTCCACCTTTTCCACGCCCACGGGCACAAATTGAGTG
CAGTTCCTGGCGCAATCATCACCGTTCTTCAGCTCGCCCGTCTTGTACAT
CTGGCACTGGACACAATCCTTCAGCTCCTGGCACCTGCCCGAGCAAGTTG
GACACTTCTCGCAATGTCGGCCCGAGAAGCGTCCCTGATCGTTAACCGTA
CACTTGCAGACACCGCATTCGCAGGTACCATGACCGGAGCAGATCTCGCC
GCCTCCAGGTGGCATACATGTATCGTTGGACTCCTGGCAGCCGCAATTGG
AGCCCGTCCAGCCTGGCTTGCATTTGCAACGGCCGCACTCGCATGTACCG
TGATCGGGACCCGAGCACAACTGGTTCCTGTTCCGTTCGCAGCTGAAGTT
GTCGCACTCGCAGTGTTTACCGGATATGATCTCAATGGGATTTGGTCGCT
TGTGGCATTCGCAGGCGCCGCAAACGCAATGGCCCCGACCAGAGCAGTCC
GTCGTCGATGTGCTATCCGCTCGACAGCTAGTGTCGTTCGCGAA
BO13564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1560-PA | 2541 | mys-RA | 1663..2538 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-RD | 4397 | CG1560-RD | 2217..3092 | 894..19 | 4380 | 100 | Minus |
| mys-RC | 4187 | CG1560-RC | 2007..2882 | 894..19 | 4380 | 100 | Minus |
| mys-RB | 4042 | CG1560-RB | 1862..2737 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8067971..8068784 | 894..81 | 4070 | 100 | Minus |
| X | 23542271 | X | 8068869..8068932 | 82..19 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:37:32 has no hits.
BO13564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:54 Download gff for
BO13564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-PA | 1665..2541 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:55 Download gff for
BO13564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1560-PA | 1665..2541 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:49 Download gff for
BO13564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RB | 1862..2743 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:53 Download gff for
BO13564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RB | 1862..2743 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:53 Download gff for
BO13564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8067971..8068783 | 82..894 | 100 | -> | Minus |
| X | 8068870..8068938 | 11..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:49 Download gff for
BO13564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7962004..7962816 | 82..894 | 100 | -> | Minus |
| arm_X | 7962903..7962971 | 11..81 | 94 | | Minus |
BO13564.5prime Sequence
876 bp (789 high quality bases) assembled on 2006-05-08
> BO13564.5prime
GAAGTTATCAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGG
CCCTCCTCATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCC
CAGAAGGCGGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAA
GTGTCACACCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGG
ACTTTAAGGGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCG
GAGGAGTTCGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAA
CAAACTAACGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCT
CCGCCATGTCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCG
TCGAGCTTCTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATA
CGAAGAGTACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGC
GACTCGCATTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCC
CAGGCGGAGGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAA
ATCTATGGAGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGT
CCGAGACCATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCG
TTTGTGGACAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACT
CGAGCATCCATGCGAAAACTGCAAGGCTCCCTATGGTTACCAAAATCACA
TGCCACTCAAACATAACACCGAAAGCTTCTCTAACGAGGTGAAGAATGCC
ACAGTGTCGGGCAACTTGGATGCTCC
BO13564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1560-PA | 2541 | mys-RA | 1..860 | 17..876 | 4250 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-RD | 4397 | CG1560-RD | 554..1414 | 16..876 | 4275 | 99.8 | Plus |
| mys-RC | 4187 | CG1560-RC | 344..1204 | 16..876 | 4275 | 99.8 | Plus |
| mys-RA | 4042 | CG1560-RA | 199..1059 | 16..876 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8063957..8064464 | 16..523 | 2525 | 99.8 | Plus |
| X | 23542271 | X | 8064533..8064761 | 519..747 | 1145 | 100 | Plus |
| X | 23542271 | X | 8065448..8065532 | 748..832 | 395 | 97.6 | Plus |
| X | 23542271 | X | 8067062..8067105 | 833..876 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:56:29 has no hits.
BO13564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:55 Download gff for
BO13564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:57 Download gff for
BO13564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1560-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:15 Download gff for
BO13564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 196..1059 | 10..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:37 Download gff for
BO13564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 196..1059 | 10..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:37 Download gff for
BO13564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8063954..8064459 | 10..518 | 99 | -> | Plus |
| X | 8064533..8064761 | 519..747 | 100 | -> | Plus |
| X | 8065448..8065532 | 748..832 | 97 | -> | Plus |
| X | 8067062..8067105 | 833..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:15 Download gff for
BO13564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7957987..7958492 | 10..518 | 99 | -> | Plus |
| arm_X | 7958566..7958794 | 519..747 | 100 | -> | Plus |
| arm_X | 7959481..7959565 | 748..832 | 97 | -> | Plus |
| arm_X | 7961095..7961138 | 833..876 | 100 | | Plus |
BO13564.complete Sequence
2572 bp assembled on 2008-11-10
GenBank Submission: KX799531
> BO13564.complete
GAAGTTATCAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGG
CCCTCCTCATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCC
CAGAAGGCGGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAA
GTGTCACACCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGG
ACTTTAAGGGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCG
GAGGAGTTCGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAA
CAAACTAACGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCT
CCGCCATGTCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCG
TCGAGCTTCTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATA
CGAAGAGTACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGC
GACTCGCATTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCC
CAGGCGGAGGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAA
ATCTATGGAGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGT
CCGAGACCATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCG
TTTGTGGACAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACT
CGAGCATCCATGCGAAAACTGCAAGGCTCCCTATGGTTACCAAAATCACA
TGCCACTCAACAATAACACCGAAAGCTTCTCTAACGAGGTGAAGAATGCC
ACAGTGTCGGGCAACTTGGATGCTCCCGAAGGAGGTTTCGATGCCATCAT
GCAGGCCATTGCCTGCCGATCGCAGATCGGTTGGCGGGAACAGGCTCGTC
GGCTGTTGGTCTTCTCGACGGACGCAGGCTTCCATTATGCTGGCGATGGC
AAATTGGGCGGTGTGATTGCTCCAAACGATGGCGAGTGTCACTTGAGTCC
CAAGGGCGAGTACACGCATTCGACGCTGCAGGATTATCCCAGTATTTCGC
AGATCAACCAGAAGGTCAAGGACAATGCCATCAATATTATCTTCGCCGTC
ACTGCCAGTCAGCTGTCTGTCTACGAAAAGTTGGTGGAGCACATCCAGGG
CTCTTCGGCGGCCAAGCTCGATAACGATTCATCCAATGTGGTTGAATTGG
TCAAGGAAGAATATCGCAAAATCTCCTCTTCGGTGGAGATGAAGGACAAC
GCCACTGGAGATGTGAAGATCACCTATTTCTCGTCATGCCTGAGCAACGG
ACCCGAAGTGCAGACCTCTAAGTGCGACAATCTGAAGGAGGGCCAGCAGG
TGAGCTTCACAGCTCAGATTCAGTTGCTCAAGTGTCCCGAGGATCCGCGC
GACTGGACACAGACGATCCACATCTCGCCCGTCGGCATCAACGAGGTCAT
GCAAATCCAGCTGACCATGCTCTGCTCGTGTCCCTGCGAGAATCCCGGTT
CAATTGGATATCAGGTGCAGGCGAACAGCTGCAGCGGCCACGGCACCTCA
ATGTGCGGCATCTGCAATTGCGATGATAGCTATTTCGGCAACAAATGCGA
GTGCTCGGCAACGGATCTAACATCGAAATTCGCGAACGACACTAGCTGTC
GAGCGGATAGCACATCGACGACGGACTGCTCTGGTCGGGGCCATTGCGTT
TGCGGCGCCTGCGAATGCCACAAGCGACCAAATCCCATTGAGATCATATC
CGGTAAACACTGCGAGTGCGACAACTTCAGCTGCGAACGGAACAGGAACC
AGTTGTGCTCGGGTCCCGATCACGGTACATGCGAGTGCGGCCGTTGCAAA
TGCAAGCCAGGCTGGACGGGCTCCAATTGCGGCTGCCAGGAGTCCAACGA
TACATGTATGCCACCTGGAGGCGGCGAGATCTGCTCCGGTCATGGTACCT
GCGAATGCGGTGTCTGCAAGTGTACGGTTAACGATCAGGGACGCTTCTCG
GGCCGACATTGCGAGAAGTGTCCAACTTGCTCGGGCAGGTGCCAGGAGCT
GAAGGATTGTGTCCAGTGCCAGATGTACAAGACGGGCGAGCTGAAGAACG
GTGATGATTGCGCCAGGAACTGCACTCAATTTGTGCCCGTGGGCGTGGAA
AAGGTGGAGATCGATGAGACCAAGGACGAGCAGATGTGCAAATTCTTCGA
CGAGGACGACTGCAAGTTTATGTTCAAGTACAGCGAACAGGGTGAGCTGC
ATGTGTATGCCCAGGAGAATAAGGAGTGTCCGGCCAAGGTTTTCATGTTG
GGCATCGTTATGGGCGTAATTGCCGCCATTGTCCTGGTCGGTCTGGCCAT
TCTCCTGCTGTGGAAGCTGCTCACTACGATCCACGATCGGCGGGAGTTCG
CTCGCTTCGAGAAGGAGCGCATGAACGCCAAGTGGGATACGGGCGAGAAT
CCCATCTACAAGCAGGCCACGTCCACCTTCAAGAACCCCATGTATGCGGG
CAAAGCAAGCTTTCTAGACCAT
BO13564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-RD | 2541 | CG1560-PD | 1..2538 | 17..2554 | 12690 | 100 | Plus |
| mys-RC | 2541 | CG1560-PC | 1..2538 | 17..2554 | 12690 | 100 | Plus |
| mys-RA | 2541 | CG1560-PA | 1..2538 | 17..2554 | 12690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-RD | 4397 | CG1560-RD | 554..3092 | 16..2554 | 12695 | 100 | Plus |
| mys-RC | 4187 | CG1560-RC | 344..2882 | 16..2554 | 12695 | 100 | Plus |
| mys-RA | 4042 | CG1560-RA | 199..2737 | 16..2554 | 12695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8067560..8068784 | 1268..2492 | 6125 | 100 | Plus |
| X | 23542271 | X | 8063957..8064464 | 16..523 | 2525 | 99.8 | Plus |
| X | 23542271 | X | 8067062..8067496 | 833..1267 | 2175 | 100 | Plus |
| X | 23542271 | X | 8064533..8064761 | 519..747 | 1145 | 100 | Plus |
| X | 23542271 | X | 8065448..8065532 | 748..832 | 425 | 100 | Plus |
| X | 23542271 | X | 8068869..8068932 | 2491..2554 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:27:30 has no hits.
BO13564.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:02 Download gff for
BO13564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 194..2741 | 10..2562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:27 Download gff for
BO13564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 200..2737 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:59 Download gff for
BO13564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 198..2735 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:13 Download gff for
BO13564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 200..2737 | 17..2556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:13 Download gff for
BO13564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8063958..8064459 | 17..518 | 100 | -> | Plus |
| X | 8064533..8064761 | 519..747 | 100 | -> | Plus |
| X | 8065448..8065532 | 748..832 | 100 | -> | Plus |
| X | 8067062..8067496 | 833..1267 | 100 | -> | Plus |
| X | 8067560..8068783 | 1268..2491 | 100 | -> | Plus |
| X | 8068870..8068932 | 2492..2556 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:27 Download gff for
BO13564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7957991..7958492 | 17..518 | 100 | -> | Plus |
| arm_X | 7958566..7958794 | 519..747 | 100 | -> | Plus |
| arm_X | 7959481..7959565 | 748..832 | 100 | -> | Plus |
| arm_X | 7961095..7961529 | 833..1267 | 100 | -> | Plus |
| arm_X | 7961593..7962816 | 1268..2491 | 100 | -> | Plus |
| arm_X | 7962903..7962965 | 2492..2556 | 96 | | Plus |
BO13564.pep Sequence
Translation from 16 to 2572
> BO13564.pep
MILERNRRCQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCI
QTEGCAWCMQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQ
YKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSA
GEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD
KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPCE
NCKAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIAC
RSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYT
HSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAK
LDNDSSNVVELVKEEYRKISSSVEMKDNATGDVKITYFSSCLSNGPEVQT
SKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLT
MLCSCPCENPGSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATD
LTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISGKHCE
CDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDTCMPP
GGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQ
CQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCK
FMFKYSEQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK
LLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGKASFL
DH
BO13564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-PD | 846 | CG1560-PD | 1..846 | 1..846 | 4573 | 100 | Plus |
| mys-PC | 846 | CG1560-PC | 1..846 | 1..846 | 4573 | 100 | Plus |
| mys-PA | 846 | CG1560-PA | 1..846 | 1..846 | 4573 | 100 | Plus |
| mys-PB | 846 | CG1560-PB | 1..846 | 1..846 | 4472 | 98 | Plus |
| Itgbetanu-PB | 799 | CG1762-PB | 33..785 | 40..841 | 1030 | 31 | Plus |
