Clone Sequence Records
BO13566.3prime Sequence
854 bp (762 high quality bases) assembled on 2006-05-08
> BO13566.3prime
ATGGTCTAGAAAGCTTGCAATTTTTGCAATTTGGCTAAGGCGGCGTTTCA
GAAAGTCCTGGCGGTCAGCTGAGTTCTCCAGTTCCCGCCACTCGTGCCAA
TAGATCACCAGTGGCTGATGTCCCAATTGCCGCAGCTGCCTTAGCTTCAT
ATCCATTTGGCCGGTGAAACGATCCTTATCGCGGATTACGTTGTTCCAGC
CGGCAATAACGATAACCACTGTGACCAGCTGGTCATCCGCAGCCTTTCTC
TCACCCAGTAAGTGCTTCCGGGTGAGAATCTCACCGCTGTAATCCTGACA
GGCCTCACCATTTATGGACAACGCCTTCCGTTGCCGGCGGTCGTAGCACA
ACACTACATCGCATCGATCGTATTGCGGCAGGATGTGCTTGAAGGTCACG
GGACGGTGGATCATGGTGATCGCATCCCGTATTTCCACTAGAATACGATC
GGTATTATTCAGCTTGAAGCGTCCGTCCCGATCGGGGATGTACTGCGTGT
AATTGCGGCCCATCTGCTGTCGTTGCTTCTCGGTAACCAGTGCTCCCTGG
TATTCCGGCCCCAGGAGGCGTGCGAACCCATCCAAATGGAAGTACTCACG
CCCGGGCAATCCGCTTGGGTACGCATGCTTCAGGAAACGCGGCTCCAGTG
CCACGCCCAAAAGCTCAAGATCGTAAACACCACGCATTGTGAGAAACTGA
AGGCAGTTGGAGAAACAACGAGGATGGCGCAGTATCTCCTCTATACGCTG
GCGCAGCAAATCGGGCAATCTCTCCGCCAACCGGCGTTCCACTCCCGACT
TAGTTGTAATATTGAAAAGGGCCATTACCAGACAAATTCGCTCCATATCC
TTGA
BO13566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-PA | 1890 | CG2124-RA | 1052..1887 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 2782 | CG2124-RA | 1180..2015 | 854..19 | 4180 | 100 | Minus |
| CG1628-RC | 1499 | CG1628-RC | 1243..1330 | 19..106 | 440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10597301..10598049 | 854..106 | 3745 | 100 | Minus |
| X | 23542271 | X | 10598315..10598402 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:38:02 has no hits.
BO13566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:56 Download gff for
BO13566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-PA | 1053..1890 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:58 Download gff for
BO13566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-PA | 1053..1890 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:12 Download gff for
BO13566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 1181..2019 | 13..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:52 Download gff for
BO13566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 1181..2019 | 13..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:52 Download gff for
BO13566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10597302..10598049 | 106..853 | 100 | -> | Minus |
| X | 10598316..10598406 | 13..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:12 Download gff for
BO13566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10492349..10492439 | 13..105 | 96 | | Minus |
| arm_X | 10491335..10492082 | 106..853 | 100 | -> | Minus |
BO13566.5prime Sequence
910 bp (743 high quality bases) assembled on 2006-05-08
> BO13566.5prime
GAAGTTATCAGTCGACATGTGGGCAAGAACAAACTACCTCTGGCGAAGTG
TGGGACGTCTGCGCCGCCAAGTATGCACGACGATCGTTTCACCAGCGCGA
ATATTTGCGGACCGAGAGAATCAGTTCGCCCATGGAATCCTGATGGATTC
TCTCAAACCGTATGCAATACTGCGTCCTCGGGACTCCGCCTGGCAGGATT
TGCCCGCATCTGAAGGCTTTATGCGGCCACAGCCAGATGCCAGTGCTGCC
GATCTCTATGCGGACTTTTTAGGCCTGGTGAGGCACTGTAATCGCATGGA
ACTGAAGATCAGCGATAGCCGCTACGAAGCCTTTACCCGCTGCTTCTGTG
AGCAGCTGCATCGCCTTACGGATGAACAACTTCTTGGATCGCTTAGTGCC
TTGGCCGAGCTGCCCGTACCGGAATCGCCCAAAGCCAAGAACTACATGGA
GATATGGAATACCCTGGACATCGAGTGCTGTCGCCGCATCGAGCGATGGT
CCAGTGAACAATTGCTACTCGTGAGCGATGCCTGGTATCGTCTTGGTCTG
GTCAGGATAGGCGAGTACGTGTGGCTGGCGCTGAAAAAGCTCGGCCGCAA
GCTGCGAAAGCTGCCGCCAGAACAGCTCGTTCACTCCATGTTCCTGTGCA
ATCTACTGCGCCGACCCGTCTTCGAGATGTTCGATTTCGAGTTGAATCTG
GCCCGCTGCGTGGATCAAATGACGCTGTCCGAATTGGGCGTAATGGCCAT
GGGCTTCTTTAAGACACAGACGCCTATCAGAAATCCGGAGCTGCNTACGC
AACTCTATCAGCGATTAGGCAGCGAGCTGGACACCGTGGAAGACATTGTC
CTGGTAGCGCTGCTCAAGGTGCTGCGGTACAGCACCAAGCTGCCACAAGT
GGAGCCCGCT
BO13566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-PA | 1890 | CG2124-RA | 1..890 | 17..906 | 4381 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 2782 | CG2124-RA | 127..1018 | 15..906 | 4419 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10596248..10597139 | 15..906 | 4419 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:57:47 has no hits.
BO13566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:57 Download gff for
BO13566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:00 Download gff for
BO13566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:25 Download gff for
BO13566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 127..1021 | 15..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:13 Download gff for
BO13566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 127..1021 | 15..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:13 Download gff for
BO13566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10596248..10597142 | 15..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:25 Download gff for
BO13566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10490281..10491175 | 15..910 | 99 | | Plus |
BO13566.complete Sequence
1921 bp assembled on 2008-11-10
GenBank Submission: KX796733
> BO13566.complete
GAAGTTATCAGTCGACATGTGGGCAAGAACAAACTACCTCTGGCGAAGTG
TGGGACGTCTGCGCCGCCAAGTATGCACGACGATCGTTTCACCAGCGCGA
ATATTTGCGGACCGAGAGAATCAGTTCGCCCATGGAATCCTGATGGATTC
TCTCAAACCGTATGCAATACTGCGTCCTCGGGACTCCGCCTGGCAGGATT
TGCCCGCATCTGAAGGCTTTATGCGGCCACAGCCAGATGCCAGTGCTGCC
GATCTCTATGCGGACTTTTTAGGCCTGGTGAGGCACTGTAATCGCATGGA
ACTGAAGATCAGCGATAGCCGCTACGAAGCCTTTACCCGCTGCTTCTGTG
AGCAGCTGCATCGCCTTACGGATGAACAACTTCTTGGATCGCTTAGTGCC
TTGGCCGAGCTGCCCGTACCGGAATCGCCCAAAGCCAAGAACTACATGGA
GATATGGAATACCCTGGACATCGAGTGCTGTCGCCGCATCGAGCGATGGT
CCAGTGAACAATTGCTACTCGTGAGCGATGCCTGGTATCGTCTTGGTCTG
GTCAGGATAGGCGAGTACGTGTGGCTGGCGCTGAAAAAGCTCGGCCGCAA
GCTGCGAAAGCTGCCGCCAGAACAGCTCGTTCACTCCATGTTCCTGTGCA
ATCTACTGCGCCGACCCGTCTTCGAGATGTTCGATTTCGAGTTGAATCTG
GCCCGCTGCGTGGATCAAATGACGCTGTCCGAATTGGGCGTAATGGCCAT
GGGCTTCTTTAAGACACAGACGCCTATCAGAAATCCGGAGCTGCTAACGC
AACTCTATCAGCGATTAGGCAGCGAGCTGGACACCGTGGAAGACATTGTC
CTGGTAGCGCTGCTCAAGGTGCTGCGGTACAGCAGCAAGCTGCCACAAGT
GGAGCCGCTAAAGAAGATGTTAAGCGCTCTAGAGTCGCAAGTGGATCGCG
TTTCCCTCCTCACGTGCCTGCACATGGCTCTTCTGGGCTGTGAACTGCAA
ACGTGCAATGATGCACTGGTGGAGCGCATACTGCTGAGATTCGAGCGTGA
GTTAGAGACTGCCCGCCTCAAGGATATGGAGCGAATTTGTCTGGTAATGG
CCCTTTTCAATATTACAACTAAGTCGGGAGTGGAACGCCGGTTGGCGGAG
AGATTGCCCGATTTGCTGCGCCAGCGTATAGAGGAGATACTGCGCCATCC
TCGTTGTTTCTCCAACTGCCTTCAGTTTCTCACAATGCGTGGTGTTTACG
ATCTTGAGCTTTTGGGCGTGGCACTGGAGCCGCGTTTCCTGAAGCATGCG
TACCCAAGCGGATTGCCCGGGCGTGAGTACTTCCATTTGGATGGGTTCGC
ACGCCTCCTGGGGCCGGAATACCAGGGAGCACTGGTTACCGAGAAGCAAC
GACAGCAGATGGGCCGCAATTACACGCAGTACATCCCCGATCGGGACGGA
CGCTTCAAGCTGAATAATACCGATCGTATTCTAGTGGAAATACGGGATGC
GATCACCATGATCCACCGTCCCGTGACCTTCAAGCACATCCTGCCGCAAT
ACGATCGATGCGATGTAGTGTTGTGCTACGACCGCCGGCAACGGAAGGCG
TTGTCCATAAATGGTGAGGCCTGTCAGGATTACAGCGGTGAGATTCTCAC
CCGGAAGCACTTACTGGGTGAGAGAAAGGCTGCGGATGACCAGCTGGTCA
CAGTGGTTATCGTTATTGCCGGCTGGAACAACGTAATCCGCGATAAGGAT
CGTTTCACCGGCCAAATGGATATGAAGCTAAGGCAGCTGCGGCAATTGGG
ACATCAGCCACTGGTGATCTATTGGCACGAGTGGCGGGAACTGGAGAACT
CAGCTGACCGCCAGGACTTTCTGAAACGCCGCCTTAGCCAAATTGCAAAA
ATTGCAAGCTTTCTAGACCAT
BO13566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 1890 | CG2124-PA | 1..1887 | 17..1903 | 9435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 2782 | CG2124-RA | 127..2015 | 15..1903 | 9445 | 100 | Plus |
| CG1628-RC | 1499 | CG1628-RC | 1243..1330 | 1903..1816 | 440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10596248..10598049 | 15..1816 | 9010 | 100 | Plus |
| X | 23542271 | X | 10598315..10598402 | 1816..1903 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:27:27 has no hits.
BO13566.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:57 Download gff for
BO13566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 172..2064 | 15..1909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:35 Download gff for
BO13566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 129..2015 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:54 Download gff for
BO13566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 174..2060 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:59 Download gff for
BO13566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 129..2015 | 17..1905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:59 Download gff for
BO13566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10596250..10598049 | 17..1816 | 100 | -> | Plus |
| X | 10598316..10598402 | 1817..1905 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:35 Download gff for
BO13566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10490283..10492082 | 17..1816 | 100 | -> | Plus |
| arm_X | 10492349..10492435 | 1817..1905 | 97 | | Plus |
BO13566.pep Sequence
Translation from 16 to 1921
> BO13566.pep
MWARTNYLWRSVGRLRRQVCTTIVSPARIFADRENQFAHGILMDSLKPYA
ILRPRDSAWQDLPASEGFMRPQPDASAADLYADFLGLVRHCNRMELKISD
SRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKNYMEIWNTL
DIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGRKLRKLP
PEQLVHSMFLCNLLRRPVFEMFDFELNLARCVDQMTLSELGVMAMGFFKT
QTPIRNPELLTQLYQRLGSELDTVEDIVLVALLKVLRYSSKLPQVEPLKK
MLSALESQVDRVSLLTCLHMALLGCELQTCNDALVERILLRFERELETAR
LKDMERICLVMALFNITTKSGVERRLAERLPDLLRQRIEEILRHPRCFSN
CLQFLTMRGVYDLELLGVALEPRFLKHAYPSGLPGREYFHLDGFARLLGP
EYQGALVTEKQRQQMGRNYTQYIPDRDGRFKLNNTDRILVEIRDAITMIH
RPVTFKHILPQYDRCDVVLCYDRRQRKALSINGEACQDYSGEILTRKHLL
GERKAADDQLVTVVIVIAGWNNVIRDKDRFTGQMDMKLRQLRQLGHQPLV
IYWHEWRELENSADRQDFLKRRLSQIAKIASFLDH
BO13566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-PA | 629 | CG2124-PA | 1..629 | 1..629 | 3280 | 100 | Plus |
