Clone Sequence Records
BO13567.3prime Sequence
875 bp (741 high quality bases) assembled on 2006-05-08
> BO13567.3prime
ATGGTCTAGAAAGCTTGCTCGCCTGGCATCATCTATTCCTTCGGAAATGG
GACGAATCATCCAACGAACCCGTTTCAGCGAATTCTGCCCTGAAAAGGTG
TCCCACCAGATCCCAGTTTCTCCAGGTTGGTTCTGGGTGGTATATTCGCC
GAATAAGTTGCTCTTTGCGCAGTTGTTAAACCATCCAGCTCCCTTGTGTC
TCAGGGCGCAATTGCACTCCAGGCAGTTGTCATTATCCTGATCCACAGTG
CTAAACTTAGCTCCAGCATGATAGGACAATGAATCTCCAGCTGAAGGAGT
CAAATTATCCTGGAATTTGCCCAGCAAGACGAGTGGATATAGTTCCTTTT
CGCTGCCAATGGCAAACAACGAATATCCCGCATACGCCACGTTGCCCGAG
AAGTCCTCCATCACAATCCGCAGTTCGTGCAAGGCCGATGAAGTGAGGGC
ATGCAGTTTGTTGAGACCAATAAAGAAGTCCCCAGCCAAATTGCCAAAGC
CATCGCGATAATCCAGCCAGCCGCGTTCGAAGTTCACATCATCGGAGGTG
CGGCTCAAAATAACAGTCCAATCCTCATCGCAGGATACGTAGAAGGATTC
CGATTCGGGTGTGAGCTGTACTTTTAGAATTCCGTGGTTAGAAAGGAAGG
AATAGGAGCAACTACTAGGCAACTGCCGTGTAGCTGTTGGTCCATTTAAT
CCACTTGGACCGTAGAAGATTGGCTGCTGACCTGGTGTCGACCTNCATCC
CTTACCCTGGATCAAACGGCTTTGGCGCCTAATGGCCCGTGAAAGATTGG
CCACTTCAACCTGCACAGATCTGACACTGAGAGCAGTAGAAGCCAAAAGC
GTGGCCAAGGCATCCAGACGACTTG
BO13567.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-PA | 1383 | CG10359-RA | 524..1380 | 875..19 | 4241 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RE | 1762 | CG10359-RE | 732..1588 | 875..19 | 4259 | 99.8 | Minus |
CG10359-RG | 1684 | CG10359-RG | 654..1510 | 875..19 | 4259 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3614307..3615070 | 782..19 | 3794 | 99.7 | Minus |
3L | 28110227 | 3L | 3614157..3614254 | 875..778 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:20:44 has no hits.
BO13567.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:58 Download gff for
BO13567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-PA | 524..1383 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:01 Download gff for
BO13567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-PA | 524..1383 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:31 Download gff for
BO13567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 654..1510 | 19..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:54 Download gff for
BO13567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 654..1510 | 19..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:54 Download gff for
BO13567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3614311..3615070 | 19..778 | 99 | | Minus |
3L | 3614157..3614253 | 779..875 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:31 Download gff for
BO13567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3614157..3614253 | 779..875 | 100 | -> | Minus |
arm_3L | 3614311..3615070 | 19..778 | 99 | | Minus |
BO13567.5prime Sequence
903 bp (834 high quality bases) assembled on 2006-05-08
> BO13567.5prime
GAAGTTATCAGTCGACATGATGAGGCCCCAATTAGCGGCCATAGCCACTG
TCATGGTGCTGGCTGCGATCTGCGGTTTTGGCACTGGTTCCGTGCTGGAA
GTACCCGGAGTCACCCAGGCACCACCACTCCCACCTCGTAACCTCCGAAA
CAACCAAACGCGGTCGCGCATTCCCAACAACTTCCGAAGCATTGCGACCC
CACCAATTGCTCCCAGATGCGACTACAAGGAGCTGATGACCAATCTGCAC
GATCGCGTTGGCATCTTGGTGACCTTGGACGAGGACCAGCGCCACCGGCT
GGAAGTCATCGATAAGAAATTGGATCAGCTGGTGGAAAGCAGTTCGGCCC
GCATGGAATCGATGAAGGCCCAGCAATTGGACTTCCTGCACAGACTGGAC
AGTTTTGAGCACATCCAGCGGCTTTCGAGGAACACTCTAGATGAGCTTAA
AGATATCTCGCGCACTGTTCGTGACGTTTCCCAGGAACAGTATCCCAGCT
CGGGAATAGGTACATTTAATGAATCCAACTTGAATTTATCAAGTCGTCTG
GATGCCTTGGCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGT
GCAGGTTGAAGTGGCCAATCTTTCACGGGCCATTAGGCGCCAAAGCCGTT
TGATCCAGGGTAAGGGATTGAGGTCGACACCAGGTCAGCAGCCAATCTTC
TACGGTCCAAGTGGATTAAATGGACCAACAGCTACACGGCAGTTGCCTAG
TAGTTGCTCCTATTCCTTCCTTTCTAACCACGGAATTCTAAAAGTACAGC
TCACACCCGAATCGGAATCCTTCTACGTATCCTGCGATGAGGATTGGACT
GTTATTTTGAGCCGCACCTCCGATGATGTGAACTTCGAACGCGGCTGGCT
GGA
BO13567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-PA | 1383 | CG10359-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RG | 1684 | CG10359-RG | 128..1017 | 14..903 | 4450 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 644..1095 | 452..903 | 2260 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 128..566 | 14..452 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3614307..3614577 | 633..903 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 3614068..3614254 | 451..637 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3612319..3612492 | 14..187 | 870 | 100 | Plus |
3L | 28110227 | 3L | 3613749..3613882 | 319..452 | 670 | 100 | Plus |
3L | 28110227 | 3L | 3613075..3613205 | 188..318 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:48:24 has no hits.
BO13567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:06:59 Download gff for
BO13567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:02 Download gff for
BO13567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:21 Download gff for
BO13567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 125..1016 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:30 Download gff for
BO13567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 125..1016 | 10..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:30 Download gff for
BO13567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3612316..3612492 | 10..187 | 99 | -> | Plus |
3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
3L | 3614311..3614576 | 637..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:21 Download gff for
BO13567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
arm_3L | 3612316..3612492 | 10..187 | 99 | -> | Plus |
arm_3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
arm_3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
arm_3L | 3614311..3614576 | 637..902 | 100 | | Plus |
BO13567.complete Sequence
1414 bp assembled on 2007-07-13
GenBank Submission: FJ632835
> BO13567.complete
GAAGTTATCAGTCGACATGATGAGGCCCCAATTAGCGGCCATAGCCACTG
TCATGGTGCTGGCTGCGATCTGCGGTTTTGGCACTGGTTCCGTGCTGGAA
GTACCCGGAGTCACCCAGGCACCACCACTCCCACCTCGTAACCTCCGAAA
CAACCAAACGCGGTCGCGCATTCCCAACAACTTCCGAAGCATTGCGACCC
CACCAATTGCTCCCAGATGCGACTACAAGGAGCTGATGACCAATCTGCAC
GATCGCGTTGGCATCTTGGTGACCTTGGACGAGGACCAGCGCCACCGGCT
GGAAGTCATCGATAAGAAATTGGATCAGCTGGTGGAAAGCAGTTCGGCCC
GCATGGAATCGATGAAGGCCCAGCAATTGGACTTCCTGCACAGACTGGAC
AGTTTTGAGCACATCCAGCGGCTTTCGAGGAACACTCTAGATGAGCTTAA
AGATATCTCGCGCACTGTTCGTGACGTTTCCCAGGAACAGTATCCCAGCT
CGGGAATAGGTACATTTAATGAATCCAACTTGAATTTATCAAGTCGTCTG
GATGCCTTGGCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGT
GCAGGTTGAAGTGGCCAATCTTTCACGGGCCATTAGGCGCCAAAGCCGTT
TGATCCAGGGTAAGGGATTGAGGTCGACACCAGGTCAGCAGCCAATCTTC
TACGGTCCAAGTGGATTAAATGGACCAACAGCTACACGGCAGTTGCCTAG
TAGTTGCTCCTATTCCTTCCTTTCTAACCACGGAATTCTAAAAGTACAGC
TCACACCCGAATCGGAATCCTTCTACGTATCCTGCGATGAGGATTGGACT
GTTATTTTGAGCCGCACCTCCGATGATGTGAACTTCGAACGCGGCTGGCT
GGATTATCGCGATGGCTTTGGCAATTTGGCTGGGGACTTCTTTATTGGTC
TCAACAAACTGCATGCCCTCACTTCATCGGCCTTGCACGAACTGCGGATT
GTGATGGAGGACTTCTCGGGCAACGTGGCGTATGCGGGATATTCGTTGTT
TGCCATTGGCAGCGAAAAGGAACTATATCCACTCGTCTTGCTGGGCAAAT
TCCAGGATAATTTGACTCCTTCAGCTGGAGATTCATTGTCCTATCATGCT
GGAGCTAAGTTTAGCACTGTGGATCAGGATAATGACAACTGCCTGGAGTG
CAATTGCGCCCTGAGACACAAGGGAGCTGGATGGTTTAACAACTGCGCAA
AGAGCAACTTATTCGGCGAATATACCACCCAGAACCAACCTGGAGAAACT
GGGATCTGGTGGGACACCTTTTCAGGGCAGAATTCGCTGAAACGGGTTCG
TTGGATGATTCGTCCCATTTCCGAAGGAATAGATGATGCCAGGCGAGCAA
GCTTTCTAGACCAT
BO13567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RG | 1380 | CG10359-PG | 1..1377 | 20..1396 | 6885 | 100 | Plus |
CG10359-RE | 1458 | CG10359-PE | 511..1455 | 452..1396 | 4725 | 100 | Plus |
CG10359-RE | 1458 | CG10359-PE | 1..433 | 20..452 | 2165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RG | 1684 | CG10359-RG | 128..1510 | 14..1396 | 6915 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 644..1588 | 452..1396 | 4725 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 128..566 | 14..452 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3614307..3615070 | 633..1396 | 3820 | 100 | Plus |
3L | 28110227 | 3L | 3614068..3614254 | 451..637 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3612319..3612492 | 14..187 | 870 | 100 | Plus |
3L | 28110227 | 3L | 3613749..3613882 | 319..452 | 670 | 100 | Plus |
3L | 28110227 | 3L | 3613075..3613205 | 188..318 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:56 has no hits.
BO13567.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:50 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 1..1380 | 20..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:11 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 123..1508 | 10..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:22 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 131..1510 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:50 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 123..1508 | 10..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:30 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 131..1510 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:30 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3612322..3612492 | 17..187 | 100 | -> | Plus |
3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
3L | 3614311..3615070 | 637..1398 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:22 Download gff for
BO13567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3612322..3612492 | 17..187 | 100 | -> | Plus |
arm_3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
arm_3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
arm_3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
arm_3L | 3614311..3615070 | 637..1398 | 99 | | Plus |
BO13567.pep Sequence
Translation from 16 to 1414
> BO13567.pep
MMRPQLAAIATVMVLAAICGFGTGSVLEVPGVTQAPPLPPRNLRNNQTRS
RIPNNFRSIATPPIAPRCDYKELMTNLHDRVGILVTLDEDQRHRLEVIDK
KLDQLVESSSARMESMKAQQLDFLHRLDSFEHIQRLSRNTLDELKDISRT
VRDVSQEQYPSSGIGTFNESNLNLSSRLDALATLLASTALSVRSVQVEVA
NLSRAIRRQSRLIQGKGLRSTPGQQPIFYGPSGLNGPTATRQLPSSCSYS
FLSNHGILKVQLTPESESFYVSCDEDWTVILSRTSDDVNFERGWLDYRDG
FGNLAGDFFIGLNKLHALTSSALHELRIVMEDFSGNVAYAGYSLFAIGSE
KELYPLVLLGKFQDNLTPSAGDSLSYHAGAKFSTVDQDNDNCLECNCALR
HKGAGWFNNCAKSNLFGEYTTQNQPGETGIWWDTFSGQNSLKRVRWMIRP
ISEGIDDARRASFLDH
BO13567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-PG | 459 | CG10359-PG | 1..459 | 2..460 | 2385 | 100 | Plus |
CG10359-PE | 485 | CG10359-PE | 1..485 | 2..460 | 2348 | 94.6 | Plus |
CG1791-PC | 333 | CG1791-PC | 54..332 | 185..453 | 413 | 38.9 | Plus |
CG1791-PA | 334 | CG1791-PA | 54..333 | 185..453 | 412 | 38.8 | Plus |
CG9500-PA | 272 | CG9500-PA | 33..266 | 219..450 | 396 | 40.9 | Plus |