Clone Sequence Records
BO13568.3prime Sequence
824 bp (743 high quality bases) assembled on 2006-05-08
> BO13568.3prime
ATGGTCTAGAAAGCTTGCCTTAGTTTTGCGACTGCGCCGCGGCTGGGATT
CGTCCAGAGGCGGAAGGCCAAGGAGTTGGCGTCGTTCCCGCTTGCCACGC
AGTATGGCTTCCTTGAAGAGGTTGCAATAGAGCTCCACTGCGGCCGGCGA
GTCATCGTTGCCGGGCACCGGATAGGTGATCAGGTTGGGATTGCAATTGC
TGTCCACTATGCCAATGGTTGGTATGGCCATTTTGGCGGCGTCCCGAACC
GCCGTGTGCTGAGCCATAACGTTGTTTTGAGTGTTGAGGAAAATGCAAAG
ATCGGGCAGCCTGGTGACCGCATCGAATTGCACATTGGCATTGGTAAAGA
TGCCGCCGCGCCAAAAGCGAGTGTGCGAGAATTCACCGGCCTCCTGGGCC
TTTCGCTCCACGAGATGTGAGTTCATGGCGTTGCGGTTGAAGAACAGAAT
GATGCCATCTCGGAAGGCAATGTGTGCGGCAAAGTTGAGGGCATCGCGCA
GATGTGATGCCGTCTTGTCCAGATCGAAGATCAGATGACCTAATCGACTG
CCGAACAAGTACGGACGCATTCGGTCGTCCAGGGAGCCCTCCTTGTGGCC
ATAGTGCACTCGGGCATTGAAGAGGTCGCGCACGGTGAACAGGTTGTGCA
CTTGGAAGTAGTCCGGATGCTTCAGAATCCGCTGTTCCACCAGGGCGATG
TCCTCCGGTTCCGTTTCCACCGATTGCTCCGGCTGTGTGCTCTGCAAGCG
TCGTGGCAAACCGCACATCTGACCAAAGCGGGGTAGGTTGGCAAACGATT
TTCTCAACATGTCGACTGATAACT
BO13568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2937-PA | 795 | mRpS2-RA | 1..792 | 810..19 | 3885 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 924 | CG2937-RA | 57..848 | 810..19 | 3915 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4849515..4850281 | 19..785 | 3790 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:26:10 has no hits.
BO13568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:00 Download gff for
BO13568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:03 Download gff for
BO13568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2937-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:39:32 Download gff for
BO13568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 57..851 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:02 Download gff for
BO13568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 57..851 | 15..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:02 Download gff for
BO13568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4849512..4850281 | 15..785 | 99 | <- | Plus |
| 2L | 4850339..4850363 | 786..810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:39:32 Download gff for
BO13568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4849512..4850281 | 15..785 | 99 | <- | Plus |
| arm_2L | 4850339..4850363 | 786..810 | 100 | | Plus |
BO13568.5prime Sequence
824 bp (755 high quality bases) assembled on 2006-05-08
> BO13568.5prime
GAAGTTATCAGTCGACATGTTGAGAAAATCGTTTGCCAACCTACCCCGCT
TTGGTCAGATGTGCGGTCTGCCACGACGCCTGCAGAGCACACAGCCGGAG
CAATCGGTGGAAACGGAACCGGAGGACATCGCCCTGGTGGAACAGCGGAT
TCTGAAGCATCCGGACTACTTCCAAGTGCACAACCTGTTCACCGTGCGCG
ACCTCTTCAATGCCCGAGTGCACTATGGCCACAAGGAGGGCTCCCTGGAC
GACCGAATGCGTCCGTACTTGTTCGGCAGTCGATTAGGTCATCTGATCTT
CGATCTGGACAAGACGGCATCACATCTGCGCGATGCCCTCAACTTTGCCG
CACACATTGCCTTCCGAGATGGCATCATTCTGTTCTTCAACCGCAACGCC
ATGAACTCACATCTCGTGGAGCGAAAGGCCCAGGAGGCCGGTGAATTCTC
GCACACTCGCTTTTGGCGCGGCGGCATCTTTACCAATGCCAATGTGCAAT
TCGATGCGGTCACCAGGCTGCCCGATCTTTGCATTTTCCTCAACACTCAA
AACAACGTTATGGCTCAGCACACGGCGGTTCGGGACGCCGCCAAAATGGC
CATACCAACCATTGGCATAGTGGACAGCAATTGCAATCCCAACCTGATCA
CCTATCCGGTGCCCGGCAACGATGACTCGCCGGCCGCAGTGGAGCTCTAT
TGCAACCTCTTCAAGGAAGCCATACTGCGTGGCAAGCGGGAACGACGCCA
ACTCCTTGGCCTTCCGCCTCTGGACGAATCCCAGCCGCGGCGCAGTCGCA
AAACTAAGGCAAGCTTTCTAGACC
BO13568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2937-PA | 795 | mRpS2-RA | 1..792 | 17..808 | 3935 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 924 | CG2937-RA | 57..848 | 17..808 | 3945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4849515..4850281 | 808..42 | 3820 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:23:08 has no hits.
BO13568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:01 Download gff for
BO13568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:05 Download gff for
BO13568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2937-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:46 Download gff for
BO13568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 57..851 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:04 Download gff for
BO13568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 57..851 | 17..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:04 Download gff for
BO13568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4849512..4850281 | 42..812 | 99 | <- | Minus |
| 2L | 4850339..4850363 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:46 Download gff for
BO13568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4849512..4850281 | 42..812 | 99 | <- | Minus |
| arm_2L | 4850339..4850363 | 17..41 | 100 | | Minus |
BO13568.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ632836
> BO13568.complete
GAAGTTATCAGTCGACATGTTGAGAAAATCGTTTGCCAACCTACCCCGCT
TTGGTCAGATGTGCGGTCTGCCACGACGCCTGCAGAGCACACAGCCGGAG
CAATCGGTGGAAACGGAACCGGAGGACATCGCCCTGGTGGAACAGCGGAT
TCTGAAGCATCCGGACTACTTCCAAGTGCACAACCTGTTCACCGTGCGCG
ACCTCTTCAATGCCCGAGTGCACTATGGCCACAAGGAGGGCTCCCTGGAC
GACCGAATGCGTCCGTACTTGTTCGGCAGTCGATTAGGTCATCTGATCTT
CGATCTGGACAAGACGGCATCACATCTGCGCGATGCCCTCAACTTTGCCG
CACACATTGCCTTCCGAGATGGCATCATTCTGTTCTTCAACCGCAACGCC
ATGAACTCACATCTCGTGGAGCGAAAGGCCCAGGAGGCCGGTGAATTCTC
GCACACTCGCTTTTGGCGCGGCGGCATCTTTACCAATGCCAATGTGCAAT
TCGATGCGGTCACCAGGCTGCCCGATCTTTGCATTTTCCTCAACACTCAA
AACAACGTTATGGCTCAGCACACGGCGGTTCGGGACGCCGCCAAAATGGC
CATACCAACCATTGGCATAGTGGACAGCAATTGCAATCCCAACCTGATCA
CCTATCCGGTGCCCGGCAACGATGACTCGCCGGCCGCAGTGGAGCTCTAT
TGCAACCTCTTCAAGGAAGCCATACTGCGTGGCAAGCGGGAACGACGCCA
ACTCCTTGGCCTTCCGCCTCTGGACGAATCCCAGCCGCGGCGCAGTCGCA
AAACTAAGGCAAGCTTTCTAGACCAT
BO13568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 795 | CG2937-PA | 1..792 | 17..808 | 3945 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 924 | CG2937-RA | 57..848 | 17..808 | 3945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4849515..4850281 | 808..42 | 3820 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:24 has no hits.
BO13568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:31 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:45 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 56..850 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:23 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 62..848 | 22..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:31 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 56..850 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:25 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 62..848 | 22..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:25 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4849513..4850281 | 42..810 | 99 | <- | Minus |
| 2L | 4850339..4850358 | 22..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:23 Download gff for
BO13568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4849513..4850281 | 42..810 | 99 | <- | Minus |
| arm_2L | 4850339..4850358 | 22..41 | 100 | | Minus |
BO13568.pep Sequence
Translation from 16 to 826
> BO13568.pep
MLRKSFANLPRFGQMCGLPRRLQSTQPEQSVETEPEDIALVEQRILKHPD
YFQVHNLFTVRDLFNARVHYGHKEGSLDDRMRPYLFGSRLGHLIFDLDKT
ASHLRDALNFAAHIAFRDGIILFFNRNAMNSHLVERKAQEAGEFSHTRFW
RGGIFTNANVQFDAVTRLPDLCIFLNTQNNVMAQHTAVRDAAKMAIPTIG
IVDSNCNPNLITYPVPGNDDSPAAVELYCNLFKEAILRGKRERRQLLGLP
PLDESQPRRSRKTKASFLDH
BO13568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-PA | 264 | CG2937-PA | 1..264 | 1..264 | 1389 | 100 | Plus |
