Clone BO13570 Report

Search the DGRC for BO13570

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG1463-RA
Protein status:BO13570.pep: validated full length
Sequenced Size:1042

Clone Sequence Records

BO13570.3prime Sequence

882 bp (792 high quality bases) assembled on 2006-05-08

> BO13570.3prime
ATGGTCTAGAAAGCTTGCCAGTACAACACTTTGTCTGTAGAGTGCCTCGA
ATTCTTCGTCGTCTTCAGTCTCACTAACATCTTCACCAGCAAATGCTGCA
GCCAGTTTATAGTACACATCATGTGAATCATCTAAGTCCTCCGCAACTGC
GTTGGAGGATGTTCCTGGTTTGGTTACAGGCACCTGCTCTTCGTGCTCTT
CCTCGAATTCCTCACTGCTGTCGATGGCTTCATATCCTCCTGGTGGCTTC
GGATCGTAGGTGACCAAAATGGTGGGAAACTCCACGATGGTTTTGCCGAC
TAGATTCTCGGCCAGCGTTTTGGTCGAGTCCAGGAGATAACACCTCGTAG
AGCTGCGTCGCACGCCCTCGGCTCTAAGCCAAAAACTCAGCTGACCAATA
CCGGCAGTCTGATGGTTGGCCAGCAGTTTGCGTTGTTCCCGTGCCGTCTC
GTGCCGCAGATCCACATACTTGGCTACCAGATCGGGCAGCGTGAGCTCCT
CATTGCATTCCTTGTCCACAAATCGAGTTACATTCCGGGGAAGGCTTGCC
TCGTATGGAATATTTGCAAACAGCCACTCTATACGCCAATGGAATCGTCC
CAGTTTCCAGTTTAGATACGTGGTGTTCTCCTTGTGCCGACTGAAATTCT
CCAGTTGCAAGCGCAGATTAATGTTACGCTTCTTGGCTGCCATCCGCATG
CGATGTTGAGTCACTGGGAGATTCCTTTGGTCGTGGGTAAATCGCTTGCA
CGGATCGGATTTTCGATTCTCTGCATAGCGTGTGCACTCCTCCAAGAAGC
AGTAGTCACTCATGAATTCCCGCGAGGTCATCTCGCTCAGCGGTACGAAC
TTGGTGCGATCCCGCTGGCCATCGCAAGTGAG

BO13570.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PA 1011 CG1463-RA 151..1008 876..19 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1234 CG1463-RB 208..1065 876..19 4290 100 Minus
CG1463-RC 1293 CG1463-RC 267..1124 876..19 4290 100 Minus
CG1463-RA 1526 CG1463-RA 208..1065 876..19 4290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12610687..12611349 214..876 3315 100 Plus
X 23542271 X 12610438..12610634 19..215 985 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:09:49 has no hits.

BO13570.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:03 Download gff for BO13570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-PA 145..1011 18..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:09 Download gff for BO13570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-PA 145..1011 18..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:18 Download gff for BO13570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 202..1065 19..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:18 Download gff for BO13570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 202..1065 19..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:18 Download gff for BO13570.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12610438..12610634 19..215 100 <- Plus
X 12610689..12611355 216..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:18 Download gff for BO13570.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12504471..12504667 19..215 100 <- Plus
arm_X 12504722..12505388 216..882 99   Plus

BO13570.5prime Sequence

833 bp (831 high quality bases) assembled on 2006-05-08

> BO13570.5prime
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAA
AACCATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCAC
CAGGAGGATATGAAGCCATCGACAGCAGTGAGG

BO13570.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PA 1011 CG1463-RA 1..817 17..833 4085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1234 CG1463-RB 49..874 9..833 4090 99.8 Plus
CG1463-RC 1293 CG1463-RC 108..933 9..833 4090 99.8 Plus
CG1463-RA 1526 CG1463-RA 49..874 9..833 4090 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12610687..12611473 829..43 3935 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:30:57 has no hits.

BO13570.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:04 Download gff for BO13570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:10 Download gff for BO13570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:42 Download gff for BO13570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 44..874 1..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:26 Download gff for BO13570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 44..874 1..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:26 Download gff for BO13570.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12610684..12611470 46..833 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:42 Download gff for BO13570.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12504717..12505503 46..833 99 <- Minus

BO13570.complete Sequence

1042 bp assembled on 2006-10-11

GenBank Submission: FJ632837

> BO13570.complete
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAA
AACCATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCAC
CAGGAGGATATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCAC
GAAGAGCAGGTGCCTGTAACCAAACCAGGAACATCCTCCAACGCAGTTGC
GGAGGACTTAGATGATTCACATGATGTGTACTATAAACTGGCTGCAGCAT
TTGCTGGTGAAGATGTTAGTGAGACTGAAGACGACGAAGAATTCGAGGCA
CTCTACAGACAAAGTGTTGTACTGGCAAGCTTTCTAGACCAT

BO13570.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1011 CG1463-PB 1..1008 17..1024 5040 100 Plus
CG1463-RC 1011 CG1463-PC 1..1008 17..1024 5040 100 Plus
CG1463-RA 1011 CG1463-PA 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1234 CG1463-RB 58..1065 17..1024 5040 100 Plus
CG1463-RC 1293 CG1463-RC 117..1124 17..1024 5040 100 Plus
CG1463-RA 1526 CG1463-RA 58..1065 17..1024 5040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12610687..12611473 829..43 3935 100 Minus
X 23542271 X 12610438..12610634 1024..828 985 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:00 has no hits.

BO13570.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:39 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 17..1025 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:55 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 35..1056 1..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:12 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 58..1065 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:39 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 35..1056 1..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:00 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 58..1065 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:00 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
X 12611523..12611551 17..45 100   Minus
X 12610436..12610634 828..1026 98 <- Minus
X 12610689..12611470 46..827 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:12 Download gff for BO13570.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12504469..12504667 828..1026 98 <- Minus
arm_X 12504722..12505503 46..827 100 <- Minus
arm_X 12505556..12505584 17..45 100   Minus

BO13570.pep Sequence

Translation from 16 to 1042

> BO13570.pep
MADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELN
CDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRFTHDQ
RNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFHWRIE
WLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAREQRK
LLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTIVEF
PTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAEDLDD
SHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVLASFLDH

BO13570.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PB 336 CG1463-PB 1..336 1..336 1791 100 Plus
CG1463-PC 336 CG1463-PC 1..336 1..336 1791 100 Plus
CG1463-PA 336 CG1463-PA 1..336 1..336 1791 100 Plus