Clone Sequence Records
BO13570.3prime Sequence
882 bp (792 high quality bases) assembled on 2006-05-08
> BO13570.3prime
ATGGTCTAGAAAGCTTGCCAGTACAACACTTTGTCTGTAGAGTGCCTCGA
ATTCTTCGTCGTCTTCAGTCTCACTAACATCTTCACCAGCAAATGCTGCA
GCCAGTTTATAGTACACATCATGTGAATCATCTAAGTCCTCCGCAACTGC
GTTGGAGGATGTTCCTGGTTTGGTTACAGGCACCTGCTCTTCGTGCTCTT
CCTCGAATTCCTCACTGCTGTCGATGGCTTCATATCCTCCTGGTGGCTTC
GGATCGTAGGTGACCAAAATGGTGGGAAACTCCACGATGGTTTTGCCGAC
TAGATTCTCGGCCAGCGTTTTGGTCGAGTCCAGGAGATAACACCTCGTAG
AGCTGCGTCGCACGCCCTCGGCTCTAAGCCAAAAACTCAGCTGACCAATA
CCGGCAGTCTGATGGTTGGCCAGCAGTTTGCGTTGTTCCCGTGCCGTCTC
GTGCCGCAGATCCACATACTTGGCTACCAGATCGGGCAGCGTGAGCTCCT
CATTGCATTCCTTGTCCACAAATCGAGTTACATTCCGGGGAAGGCTTGCC
TCGTATGGAATATTTGCAAACAGCCACTCTATACGCCAATGGAATCGTCC
CAGTTTCCAGTTTAGATACGTGGTGTTCTCCTTGTGCCGACTGAAATTCT
CCAGTTGCAAGCGCAGATTAATGTTACGCTTCTTGGCTGCCATCCGCATG
CGATGTTGAGTCACTGGGAGATTCCTTTGGTCGTGGGTAAATCGCTTGCA
CGGATCGGATTTTCGATTCTCTGCATAGCGTGTGCACTCCTCCAAGAAGC
AGTAGTCACTCATGAATTCCCGCGAGGTCATCTCGCTCAGCGGTACGAAC
TTGGTGCGATCCCGCTGGCCATCGCAAGTGAG
BO13570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-PA | 1011 | CG1463-RA | 151..1008 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1234 | CG1463-RB | 208..1065 | 876..19 | 4290 | 100 | Minus |
CG1463-RC | 1293 | CG1463-RC | 267..1124 | 876..19 | 4290 | 100 | Minus |
CG1463-RA | 1526 | CG1463-RA | 208..1065 | 876..19 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12610687..12611349 | 214..876 | 3315 | 100 | Plus |
X | 23542271 | X | 12610438..12610634 | 19..215 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:09:49 has no hits.
BO13570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:03 Download gff for
BO13570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-PA | 145..1011 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:09 Download gff for
BO13570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-PA | 145..1011 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:18 Download gff for
BO13570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 202..1065 | 19..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:18 Download gff for
BO13570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 202..1065 | 19..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:18 Download gff for
BO13570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12610438..12610634 | 19..215 | 100 | <- | Plus |
X | 12610689..12611355 | 216..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:18 Download gff for
BO13570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12504471..12504667 | 19..215 | 100 | <- | Plus |
arm_X | 12504722..12505388 | 216..882 | 99 | | Plus |
BO13570.5prime Sequence
833 bp (831 high quality bases) assembled on 2006-05-08
> BO13570.5prime
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAA
AACCATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCAC
CAGGAGGATATGAAGCCATCGACAGCAGTGAGG
BO13570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-PA | 1011 | CG1463-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1234 | CG1463-RB | 49..874 | 9..833 | 4090 | 99.8 | Plus |
CG1463-RC | 1293 | CG1463-RC | 108..933 | 9..833 | 4090 | 99.8 | Plus |
CG1463-RA | 1526 | CG1463-RA | 49..874 | 9..833 | 4090 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12610687..12611473 | 829..43 | 3935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:30:57 has no hits.
BO13570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:04 Download gff for
BO13570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:10 Download gff for
BO13570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:42 Download gff for
BO13570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 44..874 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:26 Download gff for
BO13570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 44..874 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:26 Download gff for
BO13570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12610684..12611470 | 46..833 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:42 Download gff for
BO13570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12504717..12505503 | 46..833 | 99 | <- | Minus |
BO13570.complete Sequence
1042 bp assembled on 2006-10-11
GenBank Submission: FJ632837
> BO13570.complete
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAA
AACCATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCAC
CAGGAGGATATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCAC
GAAGAGCAGGTGCCTGTAACCAAACCAGGAACATCCTCCAACGCAGTTGC
GGAGGACTTAGATGATTCACATGATGTGTACTATAAACTGGCTGCAGCAT
TTGCTGGTGAAGATGTTAGTGAGACTGAAGACGACGAAGAATTCGAGGCA
CTCTACAGACAAAGTGTTGTACTGGCAAGCTTTCTAGACCAT
BO13570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1011 | CG1463-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CG1463-RC | 1011 | CG1463-PC | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CG1463-RA | 1011 | CG1463-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1234 | CG1463-RB | 58..1065 | 17..1024 | 5040 | 100 | Plus |
CG1463-RC | 1293 | CG1463-RC | 117..1124 | 17..1024 | 5040 | 100 | Plus |
CG1463-RA | 1526 | CG1463-RA | 58..1065 | 17..1024 | 5040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12610687..12611473 | 829..43 | 3935 | 100 | Minus |
X | 23542271 | X | 12610438..12610634 | 1024..828 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:00 has no hits.
BO13570.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:39 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 1..1011 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:55 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 35..1056 | 1..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:12 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 58..1065 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:39 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 35..1056 | 1..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:00 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 58..1065 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:00 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12611523..12611551 | 17..45 | 100 | | Minus |
X | 12610436..12610634 | 828..1026 | 98 | <- | Minus |
X | 12610689..12611470 | 46..827 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:12 Download gff for
BO13570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12504469..12504667 | 828..1026 | 98 | <- | Minus |
arm_X | 12504722..12505503 | 46..827 | 100 | <- | Minus |
arm_X | 12505556..12505584 | 17..45 | 100 | | Minus |
BO13570.pep Sequence
Translation from 16 to 1042
> BO13570.pep
MADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELN
CDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRFTHDQ
RNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFHWRIE
WLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAREQRK
LLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTIVEF
PTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAEDLDD
SHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVLASFLDH
BO13570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-PB | 336 | CG1463-PB | 1..336 | 1..336 | 1791 | 100 | Plus |
CG1463-PC | 336 | CG1463-PC | 1..336 | 1..336 | 1791 | 100 | Plus |
CG1463-PA | 336 | CG1463-PA | 1..336 | 1..336 | 1791 | 100 | Plus |