Clone BO13571 Report

Search the DGRC for BO13571

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5525-RA
Protein status:BO13571.pep: Imported from assembly
Sequenced Size:1633

Clone Sequence Records

BO13571.complete Sequence

1633 bp assembled on 2009-09-17

GenBank Submission: FJ632838

> BO13571.complete
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTT
CTGCATTTCGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGG
ATTACGCTGCCATGGATCGTGTGCTCAAGGAGGAGCGTTCATACATCCTG
AACATTGTCAAGCAGATCAAGAAGTCAGGATGCAATGTTCTTCTCGTTCA
GAAGTCTATCTTGCGCGATGCTGTCTCTGATCTGGCTCAGCATTTCCTGG
ACAAGATCAAGTGCATGGTCGTTAAGGATGTGGAGCGCGAGGATATTGAG
TTCGTGTGCAAGACCCTGCACTGCCGACCGATCGCTTCGTTGGATCACTT
CACAGCCGAGAACCTTTCCAGTGCCGATCTGGTCGAGGAGGTGGCCAGTG
GTACCAACAAGTTTGTGAAGATCACCGGCATTCAGAACATGGGACGCACT
GTCTCGATCATCTGCCGCGGATCCAACAAGCTGGTGCTCGAGGAGGCTGC
TCGCTCCCTGCACGATGCCCTCTGTGTCGTCCGTTGCCTGGTGAAGCTGC
GCGCCCAGATTGTCGGCGGTGGTGCGCCCGAGATTGAGATGGCCCTGCAG
CTAGCCGCATTGGCACAAACCGTGGAGGGTGTGGATGCGTATTGCTTCCG
TGCATTTGCCGATGCTTTGGAGGTGATTCCCTCCACTCTGGCTGAGAACG
CCGGTTTGAATCCCATTGCCACGGTCACGGAGCTACGCAACCGCCACGCT
CAGGGTGAGAAGAACGCCGGTATTAATGTGCGCAAGGGCGCCATCACAGA
CATTTTCGCGGAGAACGTTGTGCAGCCGCTGCTGGTCAGTATTTCGTCGA
TCACCCTGGCCACGGAGACGATTCGATCGATCTTGAAGATCGACGATATT
GTCAACACCTTCAGTGCAAGCTTTCTAGACCAT

BO13571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1602 CG5525-PA 1..1599 17..1615 7980 99.9 Plus
Tcp-1eta-RA 1635 CG8351-PA 109..239 143..273 205 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 113..1711 17..1615 7980 99.9 Plus
Tcp-1eta-RA 1964 CG8351-RA 223..353 143..273 205 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12690617..12691304 1602..915 3425 99.9 Minus
2L 23513712 2L 12691565..12692219 775..121 3275 100 Minus
2L 23513712 2L 12691363..12691502 915..776 700 100 Minus
2L 23513712 2L 12692717..12692822 122..17 530 100 Minus
3R 32079331 3R 8801964..8802094 143..273 205 77.1 Plus
Blast to na_te.dros performed on 2014-11-28 01:38:58 has no hits.

BO13571.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:04 Download gff for BO13571.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 116..1714 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:42 Download gff for BO13571.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..1711 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:10 Download gff for BO13571.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 116..1714 17..1617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:36 Download gff for BO13571.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..1711 17..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:36 Download gff for BO13571.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12690619..12691303 916..1600 99 <- Minus
2L 12691363..12691502 776..915 100 <- Minus
2L 12691565..12692217 123..775 100 <- Minus
2L 12692717..12692822 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:42 Download gff for BO13571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12690619..12691303 916..1600 99 <- Minus
arm_2L 12691363..12691502 776..915 100 <- Minus
arm_2L 12691565..12692217 123..775 100 <- Minus
arm_2L 12692717..12692822 17..122 100   Minus

BO13571.3prime Sequence

737 bp (723 high quality bases) assembled on 2006-05-08

> BO13571.3prime
ATGGTCTAGAAAGCTTGCACTGACTGTGTTGACAATATCGTCGATCTTCA
AGATCGATCGAATCGTCTCCGTGGCCAGGGTGATCGACGAAATACTGACC
AGCAGCGGCTGCACAACGTTCTCCGCGAAAATGTCTGTGATGGCGCCCTT
GCGCACATTAATACCGGCGTTCTTCTCACCCTGAGCGTGGCGGTTGCGTA
GCTCCGTGACCGTGGCAATGGGATTCAAACCGGCGTTCTCAGCCAGAGTG
GAGGGAATCACCTCCAAAGCATCGGCAAATGCACGGAAGCAATACGCATC
CACACCCTCCACGGTTTGTGCCAATGCGGCTAGCTGCAGGGCCATCTCAA
TCTCGGGCGCACCACCGCCGACAATCTGGGCGCGCAGCTTCACCAGGCAA
CGGACGACACAGAGGGCATCGTGCAGGGAGCGAGCAGCCTCCTCGAGCAC
CAGCTTGTTGGATCCGCGGCAGATGATCGAGACAGTGCGTCCCATGTTCT
GAATGCCGGTGATCTTCACAAACTTGTTGGTACCACTGGCCACCTCCTCG
ACCAGATCGGCACTGGAAAGGTTCTCGGCTGTGAAGTGATCCAACGAAGC
GATCGGTCGGCAGTGCAGGGTCTTGCACACGAACTCAATATCCTCGCGCT
CCACATCCTTAACGACCATGCACTTGATCTTGTCCAGGAAATGCTGAGCC
AGATCAGAGACAGCATCGCGCAAGATAAACTTCTGAA

BO13571.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 1602 CG5525-RA 881..1592 737..26 3510 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 993..1711 737..19 3535 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12690617..12691304 32..719 3425 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 16:25:39 has no hits.

BO13571.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:05 Download gff for BO13571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 883..1602 15..735 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:11 Download gff for BO13571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 883..1602 15..735 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:39:26 Download gff for BO13571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 993..1716 13..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:57 Download gff for BO13571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 993..1716 13..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:57 Download gff for BO13571.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12690615..12691311 29..728 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:39:26 Download gff for BO13571.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12690615..12691311 29..728 99   Plus

BO13571.5prime Sequence

948 bp (827 high quality bases) assembled on 2006-05-08

> BO13571.5prime
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTT
CTGCATTTCGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGG
ATTACGCTGCCATGGATCGTGTGCTCAAGGAGGAGCGTTCATACATCCTG
AACATTGTCAAGCAGATCAAGAAGTCAGGATGCAATGTTCTTCTCGGTCA
GAAGTCTATCTTGCGCGATGCTGTCTCTGATCTGGCTCACCATTTCCT

BO13571.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 1602 CG5525-RA 1..932 17..948 4610 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 113..1044 17..948 4630 99.8 Plus
Tcp-1eta-RA 1964 CG8351-RA 223..353 143..273 205 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12691565..12692219 775..121 3275 100 Minus
2L 23513712 2L 12691363..12691502 915..776 685 99.3 Minus
2L 23513712 2L 12692717..12692822 122..17 530 100 Minus
3R 32079331 3R 8801964..8802094 143..273 205 77.1 Plus
Blast to na_te.dros performed on 2015-02-12 19:14:14 has no hits.

BO13571.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:06 Download gff for BO13571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:12 Download gff for BO13571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:03 Download gff for BO13571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..1044 17..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:15 Download gff for BO13571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..1044 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:15 Download gff for BO13571.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12692717..12692822 17..122 100   Minus
2L 12691271..12691303 916..948 96 <- Minus
2L 12691363..12691502 776..915 99 <- Minus
2L 12691565..12692217 123..775 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:03 Download gff for BO13571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12691271..12691303 916..948 96 <- Minus
arm_2L 12691363..12691502 776..915 99 <- Minus
arm_2L 12691565..12692217 123..775 100 <- Minus
arm_2L 12692717..12692822 17..122 100   Minus

BO13571.pep Sequence

Translation from 16 to 1633

> BO13571.pep
MAPKAAAVNIKPTAKAFKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGM
DKMIQAGNGEVSITNDGATILKQMNVLHPAAKMLVELSRAQDVAAGDGTT
SVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMSTPIEL
DDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKN
IKVISSLGGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAP
KTDMDHNVIVSDYAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILR
DAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIASLDHFTAENL
SSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHD
ALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADA
LEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDIFAEN
VVQPLLVSISSITLATETIRSILKIDDIVNTFSASFLDH

BO13571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 533 CG5525-PA 1..533 1..533 2625 100 Plus
Cct5-PB 512 CG8439-PB 4..504 26..528 823 37.6 Plus
Cct5-PA 542 CG8439-PA 32..534 24..528 820 37.5 Plus
T-cp1-PA 557 CG5374-PA 20..534 26..529 713 31.9 Plus
T-cp1-PB 557 CG5374-PB 20..534 26..529 713 31.9 Plus