Clone BO13573 Report

Search the DGRC for BO13573

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6685-RA
Protein status:BO13573.pep: validated full length
Sequenced Size:673

Clone Sequence Records

BO13573.5prime Sequence

671 bp (670 high quality bases) assembled on 2006-05-08

> BO13573.5prime
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGGCAAGCTTTCTAGACC

BO13573.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PA 642 CG6685-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 1534 CG6685-RB 24..662 17..655 3195 100 Plus
CG6685-RA 929 CG6685-RA 24..662 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9967834..9968041 414..207 1040 100 Minus
3L 28110227 3L 9968105..9968294 206..17 950 100 Minus
3L 28110227 3L 9967475..9967623 655..507 745 100 Minus
3L 28110227 3L 9967687..9967780 508..415 470 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:12:58 has no hits.

BO13573.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:07 Download gff for BO13573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:14 Download gff for BO13573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:51 Download gff for BO13573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 16..662 9..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:12 Download gff for BO13573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 16..662 9..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:12 Download gff for BO13573.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9967475..9967621 509..655 100 <- Minus
3L 9967687..9967780 415..508 100 <- Minus
3L 9967834..9968041 207..414 100 <- Minus
3L 9968105..9968302 9..206 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:51 Download gff for BO13573.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9960575..9960721 509..655 100 <- Minus
arm_3L 9960787..9960880 415..508 100 <- Minus
arm_3L 9960934..9961141 207..414 100 <- Minus
arm_3L 9961205..9961402 9..206 97   Minus

BO13573.complete Sequence

673 bp assembled on 2007-10-26

GenBank Submission: FJ632839

> BO13573.complete
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGGCAAGCTTTCTAGACCAT

BO13573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 642 CG6685-PB 1..639 17..655 3195 100 Plus
CG6685-RA 642 CG6685-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 1534 CG6685-RB 24..662 17..655 3195 100 Plus
CG6685-RA 929 CG6685-RA 24..662 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9967834..9968041 414..207 1040 100 Minus
3L 28110227 3L 9968105..9968294 206..17 950 100 Minus
3L 28110227 3L 9967475..9967623 655..507 745 100 Minus
3L 28110227 3L 9967687..9967780 508..415 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:44:41 has no hits.

BO13573.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:06 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:11 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..646 10..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:44 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 24..662 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:32 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 8..646 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:11 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 24..662 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:11 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9967473..9967621 509..657 98 <- Minus
3L 9967687..9967780 415..508 100 <- Minus
3L 9967834..9968041 207..414 100 <- Minus
3L 9968105..9968294 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:44 Download gff for BO13573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9960573..9960721 509..657 98 <- Minus
arm_3L 9960787..9960880 415..508 100 <- Minus
arm_3L 9960934..9961141 207..414 100 <- Minus
arm_3L 9961205..9961394 17..206 100   Minus

BO13573.pep Sequence

Translation from 16 to 673

> BO13573.pep
MEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILLEA
AKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSSQL
AELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQKK
MSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQRQK
CSLDPLFLDEKLTASFLDH

BO13573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PB 213 CG6685-PB 1..213 1..213 1081 100 Plus
CG6685-PA 213 CG6685-PA 1..213 1..213 1081 100 Plus