Clone Sequence Records
BO13573.5prime Sequence
671 bp (670 high quality bases) assembled on 2006-05-08
> BO13573.5prime
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGGCAAGCTTTCTAGACC
BO13573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-PA | 642 | CG6685-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 1534 | CG6685-RB | 24..662 | 17..655 | 3195 | 100 | Plus |
CG6685-RA | 929 | CG6685-RA | 24..662 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9967834..9968041 | 414..207 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 9968105..9968294 | 206..17 | 950 | 100 | Minus |
3L | 28110227 | 3L | 9967475..9967623 | 655..507 | 745 | 100 | Minus |
3L | 28110227 | 3L | 9967687..9967780 | 508..415 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:12:58 has no hits.
BO13573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:07 Download gff for
BO13573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:14 Download gff for
BO13573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:51 Download gff for
BO13573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 16..662 | 9..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:12 Download gff for
BO13573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 16..662 | 9..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:12 Download gff for
BO13573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9967475..9967621 | 509..655 | 100 | <- | Minus |
3L | 9967687..9967780 | 415..508 | 100 | <- | Minus |
3L | 9967834..9968041 | 207..414 | 100 | <- | Minus |
3L | 9968105..9968302 | 9..206 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:51 Download gff for
BO13573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9960575..9960721 | 509..655 | 100 | <- | Minus |
arm_3L | 9960787..9960880 | 415..508 | 100 | <- | Minus |
arm_3L | 9960934..9961141 | 207..414 | 100 | <- | Minus |
arm_3L | 9961205..9961402 | 9..206 | 97 | | Minus |
BO13573.complete Sequence
673 bp assembled on 2007-10-26
GenBank Submission: FJ632839
> BO13573.complete
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGGCAAGCTTTCTAGACCAT
BO13573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 642 | CG6685-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
CG6685-RA | 642 | CG6685-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 1534 | CG6685-RB | 24..662 | 17..655 | 3195 | 100 | Plus |
CG6685-RA | 929 | CG6685-RA | 24..662 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9967834..9968041 | 414..207 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 9968105..9968294 | 206..17 | 950 | 100 | Minus |
3L | 28110227 | 3L | 9967475..9967623 | 655..507 | 745 | 100 | Minus |
3L | 28110227 | 3L | 9967687..9967780 | 508..415 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:41 has no hits.
BO13573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:06 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:11 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 1..646 | 10..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:44 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 24..662 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:32 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 8..646 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:11 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 24..662 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:11 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9967473..9967621 | 509..657 | 98 | <- | Minus |
3L | 9967687..9967780 | 415..508 | 100 | <- | Minus |
3L | 9967834..9968041 | 207..414 | 100 | <- | Minus |
3L | 9968105..9968294 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:44 Download gff for
BO13573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9960573..9960721 | 509..657 | 98 | <- | Minus |
arm_3L | 9960787..9960880 | 415..508 | 100 | <- | Minus |
arm_3L | 9960934..9961141 | 207..414 | 100 | <- | Minus |
arm_3L | 9961205..9961394 | 17..206 | 100 | | Minus |
BO13573.pep Sequence
Translation from 16 to 673
> BO13573.pep
MEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILLEA
AKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSSQL
AELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQKK
MSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQRQK
CSLDPLFLDEKLTASFLDH
BO13573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-PB | 213 | CG6685-PB | 1..213 | 1..213 | 1081 | 100 | Plus |
CG6685-PA | 213 | CG6685-PA | 1..213 | 1..213 | 1081 | 100 | Plus |