Clone Sequence Records
BO13574.3prime Sequence
834 bp (769 high quality bases) assembled on 2006-05-08
> BO13574.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTTCTTAGCACTCGACTCCCTGGAGA
TAGGAACAAGATCTCTAATAATGCCGTTCAGCCGATCTGCGAATGCTTGG
AAAGAGAACTTTTGCTGCACCCGTTTGTGACCCTGGTCTCCCATCTTTAC
ACGCAGCTGCTCGTCCCGGAAAAGCTGGAGCATTGCTCCACCAAAGCTCT
TCTCGGTCTTTTCGCACAGAAAGCCAGTGGAAGTGCTCACCACCGTTTCA
GTGGGTCCGCCGCTGTTTAATGCCACGACTGGCTTCGAGCAGTACATGCC
CTCCAGCGGCACAATGCCGAAGTGCTCGTTCTCTGGCGTATACAGCAGAC
AGTGAGCGGCAAAGAGCAGGCGACATTTCTCCTCGTCGGTAGGCGAGCGT
AGCAGCACAACGTGATCCTGAAGTTTCAACTCCTCCGTAAGGTGCTCCAG
CTCCGCGAAGTGCTCCACATTTTCCATGCATCTGGTGTCGTAACCCCCGG
CGATGATCAGGCGACAGCGCTTGAAGTCCGTGGCGGGCAGCATGTCGCCC
AGAAGGCGCAGGGAATGTAAGGCAAGGGCGTGGTTCTTCTTGCGCTCGTA
GCGATTGATGTCCAGATAGATAAAGGCGTTGAGTGGTACTCGCGGATGCA
CTGGCTCGTCCAGTAAAGCAGACCGCTGTTCTAGCTTTTTCTGCATCTGG
TCAAAGTACTGGGTGTGCAGTGAAGGATACAGCACATCCGGCACCGTGCT
CAGTCGGCGAAAGGTGTCCTGGAAGACACGTAGCGTAAATTTGGAGTTGA
CCAGCACCTTGTCTGCTAGACCGATCGTGTGCTC
BO13574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-PA | 1275 | CG1291-RA | 457..1272 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1477 | CG1291-RA | 641..1456 | 834..19 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3144448..3145263 | 834..19 | 4080 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3649..3686 | 757..795 | 111 | 79.5 | Plus |
BO13574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:08 Download gff for
BO13574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-PA | 457..1275 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:15 Download gff for
BO13574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-PA | 457..1275 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:27 Download gff for
BO13574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 641..1463 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:28 Download gff for
BO13574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 641..1463 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:28 Download gff for
BO13574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3144448..3145270 | 11..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:27 Download gff for
BO13574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3144448..3145270 | 11..834 | 99 | | Minus |
BO13574.5prime Sequence
862 bp (782 high quality bases) assembled on 2006-05-08
> BO13574.5prime
GAAGTTATCAGTCGACATGGTTCGAGTTCTGTTCCTCCACCCGGATTTGG
GCATCGGAGGAGCTGAGCGACTGGTGGTGGATGCCGCTCTGGCACTCAAG
GAGCGGGGTCACCAGGTTAGCTTCCTAACGAATCACCACGACAGCACGCA
CTGCTTCAAGGAGACGGCGGACGGCACTTTTCCGGTCCACGTAGTGGGCG
ACTGGTTGCCACGCGGGCTCTTCGGAAGATTCTATGCCATCTGTGCCTAT
CTGCGCATGCTCTATGCGGCGATCTACGCCAGTTTTTTTATGCCCCAGCG
GGAGCAAGTGGACGTGGTGGTGTGCGACCTAATCTCTGTGTGCATTCCAG
TTCTCCGCTTCGCCCCTCATCGTCCGAAGGTTCTATTCTACTGCCACTTT
CCGGATCAGCTTCTCAGCAGCCGTGAAGGACTGCTAAAGCGGCTGTACCG
CCTGCCCATCAACTGGCTGGAGGAGCACACGATCGGTCTAGCAGACAAGG
TGCTGGTCAACTCCAAATTTACGCTACGTGTCTTCCAGGACACCTTTCGC
CGACTGAGCACGGTGCCGGATGTGCTGTATCCTTCACTGCACACCCAGTA
CTTTGACCAGATGCAGAAAAAGCTAGAACAGCGGTCTGCTTTACTGGACG
AGCCAGTGCATCCGCGAGTACCACTCAACGCCTTTATCTATCTGGACATC
AATCGCTACGAGCGCAAGAAGAACCACGCCCTTGCCTTACATTCCCTGCG
CCTTCTGGGCGACATGCTGCCCGCCACGGACTTCAAGCGCTGTCGCCTGA
TCATCGCCGGGGGTTACGACACCAGATGCATGGAAAATGTGGAGCACTTC
GCGGAGCTGGAG
BO13574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-PA | 1275 | CG1291-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1477 | CG1291-RA | 184..1030 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3143991..3144837 | 16..862 | 4235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3649..3686 | 550..512 | 111 | 79.5 | Minus |
BO13574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:09 Download gff for
BO13574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:17 Download gff for
BO13574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:00 Download gff for
BO13574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 180..1030 | 10..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:46:51 Download gff for
BO13574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 180..1030 | 10..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:46:51 Download gff for
BO13574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3143987..3144837 | 10..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:00 Download gff for
BO13574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3143987..3144837 | 10..862 | 99 | | Plus |
BO13574.complete Sequence
1306 bp assembled on 2006-10-11
GenBank Submission: FJ632840
> BO13574.complete
GAAGTTATCAGTCGACATGGTTCGAGTTCTGTTCCTCCACCCGGATTTGG
GCATCGGAGGAGCTGAGCGACTGGTGGTGGATGCCGCTCTGGCACTCAAG
GAGCGGGGTCACCAGGTTAGCTTCCTAACGAATCACCACGACAGCACGCA
CTGCTTCAAGGAGACGGCGGACGGCACTTTTCCGGTCCACGTAGTGGGCG
ACTGGTTGCCACGCGGGCTCTTCGGAAGATTCTATGCCATCTGTGCCTAT
CTGCGCATGCTCTATGCGGCGATCTACGCCAGTTTTTTTATGCCCCAGCG
GGAGCAAGTGGACGTGGTGGTGTGCGACCTAATCTCTGTGTGCATTCCAG
TTCTCCGCTTCGCCCCTCATCGTCCGAAGGTTCTATTCTACTGCCACTTT
CCGGATCAGCTTCTCAGCAGCCGTGAAGGACTGCTAAAGCGGCTGTACCG
CCTGCCCATCAACTGGCTGGAGGAGCACACGATCGGTCTAGCAGACAAGG
TGCTGGTCAACTCCAAATTTACGCTACGTGTCTTCCAGGACACCTTTCGC
CGACTGAGCACGGTGCCGGATGTGCTGTATCCTTCACTGCACACCCAGTA
CTTTGACCAGATGCAGAAAAAGCTAGAACAGCGGTCTGCTTTACTGGACG
AGCCAGTGCATCCGCGAGTACCACTCAACGCCTTTATCTATCTGGACATC
AATCGCTACGAGCGCAAGAAGAACCACGCCCTTGCCTTACATTCCCTGCG
CCTTCTGGGCGACATGCTGCCCGCCACGGACTTCAAGCGCTGTCGCCTGA
TCATCGCCGGGGGTTACGACACCAGATGCATGGAAAATGTGGAGCACTTC
GCGGAGCTGGAGCACCTTACGGAGGAGTTGAAACTTCAGGATCACGTTGT
GCTGCTACGCTCGCCTACCGACGAGGAGAAATGTCGCCTGCTCTTTGCCG
CTCACTGTCTGCTGTATACGCCAGAGAACGAGCACTTCGGCATTGTGCCG
CTGGAGGGCATGTACTGCTCGAAGCCAGTCGTGGCATTAAACAGCGGCGG
ACCCACTGAAACGGTGGTGAGCACTTCCACTGGCTTTCTGTGCGAAAAGA
CCGAGAAGAGCTTTGGTGGAGCAATGCTCCAGCTTTTCCGGGACGAGCAG
CTGCGTGTAAAGATGGGAGACCAGGGTCACAAACGGGTGCAGCAAAAGTT
CTCTTTCCAAGCATTCGCAGATCGGCTGAACGGCATTATTAGAGATCTTG
TTCCTATCTCCAGGGAGTCGAGTGCTAAGAAAAATAAAGCAAGCTTTCTA
GACCAT
BO13574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1275 | CG1291-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1477 | CG1291-RA | 184..1456 | 16..1288 | 6365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3143991..3145263 | 16..1288 | 6365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:30:30 has no hits.
BO13574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:11 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 1..1275 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:21 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 178..1461 | 10..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:59 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 185..1444 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:11 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 178..1461 | 10..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:01 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 185..1444 | 17..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:01 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3143992..3145251 | 17..1276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:59 Download gff for
BO13574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3143992..3145251 | 17..1276 | 100 | | Plus |
BO13574.pep Sequence
Translation from 16 to 1306
> BO13574.pep
MVRVLFLHPDLGIGGAERLVVDAALALKERGHQVSFLTNHHDSTHCFKET
ADGTFPVHVVGDWLPRGLFGRFYAICAYLRMLYAAIYASFFMPQREQVDV
VVCDLISVCIPVLRFAPHRPKVLFYCHFPDQLLSSREGLLKRLYRLPINW
LEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSLHTQYFDQMQ
KKLEQRSALLDEPVHPRVPLNAFIYLDINRYERKKNHALALHSLRLLGDM
LPATDFKRCRLIIAGGYDTRCMENVEHFAELEHLTEELKLQDHVVLLRSP
TDEEKCRLLFAAHCLLYTPENEHFGIVPLEGMYCSKPVVALNSGGPTETV
VSTSTGFLCEKTEKSFGGAMLQLFRDEQLRVKMGDQGHKRVQQKFSFQAF
ADRLNGIIRDLVPISRESSAKKNKASFLDH
BO13574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-PA | 424 | CG1291-PA | 1..424 | 1..424 | 2232 | 100 | Plus |
| CG11306-PB | 475 | CG11306-PB | 281..414 | 223..356 | 155 | 30.9 | Plus |
| CG11306-PA | 475 | CG11306-PA | 281..414 | 223..356 | 155 | 30.9 | Plus |
