Clone BO13576 Report

Search the DGRC for BO13576

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG5757-RA
Protein status:BO13576.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO13576.5prime Sequence

665 bp (664 high quality bases) assembled on 2006-05-08

> BO13576.5prime
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGG
CAAGCTTTCTAGACC

BO13576.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-PA 636 CG5757-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 992 CG5757-RB 167..799 17..649 3165 100 Plus
CG5757-RA 897 CG5757-RA 72..704 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18094165..18094532 465..98 1840 100 Minus
2R 25286936 2R 18093916..18094100 649..465 925 100 Minus
2R 25286936 2R 18094584..18094665 98..17 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:14:02 has no hits.

BO13576.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:12 Download gff for BO13576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-PA 1..636 17..650 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:23 Download gff for BO13576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-PA 1..636 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:01 Download gff for BO13576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..708 7..655 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:43:01 Download gff for BO13576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..708 7..655 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:43:01 Download gff for BO13576.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18094165..18094531 99..465 100 <- Minus
2R 18094584..18094671 7..98 95   Minus
2R 18093912..18094099 466..655 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:01 Download gff for BO13576.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13981417..13981604 466..655 98 <- Minus
arm_2R 13981670..13982036 99..465 100 <- Minus
arm_2R 13982089..13982176 7..98 95   Minus

BO13576.3prime Sequence

665 bp (664 high quality bases) assembled on 2006-05-08

> BO13576.3prime
ATGGTCTAGAAAGCTTGCCGATAACGTGTCCAGAGGTCGGGTGGCCACTT
TGGGCAGGAGTTCCTCCGTAATGCTCGCTATCTGGGCATGTAAATCCTCT
ACAGACTGTCTGGCATCGAACTGGTGAAAATAGCTGCCCTCCTTGGAGCA
AATGCGGTTGAATACTTCGGCCACACGACCTTGGAATTCTACTTTCTCAT
AACGCTCTTTGCCGTATTGTCCTCGATGTGTAAGGTCGTTTGGTGGTGCT
CTTAGGTAAAATACAGCATCTGGTTTTATGAGCCCCCTTTCCGGAGCATA
GCACCAATCAAAGTCTAATCCTTTGGCTGCGCTATATGCCACGCCAGAGA
ACGAATATCGATCCACAACCAATGTGGTGCCCTCAAGCAGCTTCTCCTTC
ACCTGGTTTATGTGCTCCCAGCGGTTGGCGGAGAACATTAAGTGAATCAC
CTCATCCGGAAGATCCTTGCTGTTCGTTAAATAGGAGTTTATCACCTGAC
CAATGCTGGAACTGCGTTCCGGGAAATTCATGGGCAATGTCGGAATGCCC
TTCGATTTCAAGAGTTCAACCAACAGCCTGCTTTGAGTGGTCTTTCCACT
TCGATCACATCCTTCAAATATTATCAACGCTCCACGTTTTCCCGCGCTCA
TGTCGACTGATAACT

BO13576.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-PA 636 CG5757-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 992 CG5757-RB 167..799 651..19 3165 100 Minus
CG5757-RA 897 CG5757-RA 72..704 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18094165..18094532 203..570 1840 100 Plus
2R 25286936 2R 18093916..18094100 19..203 925 100 Plus
2R 25286936 2R 18094584..18094665 570..651 410 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:16:02 has no hits.

BO13576.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:11 Download gff for BO13576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-PA 1..636 18..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:21 Download gff for BO13576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-PA 1..636 18..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:28 Download gff for BO13576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..708 13..661 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:19 Download gff for BO13576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..708 13..661 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:19 Download gff for BO13576.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18093912..18094099 13..202 98 <- Plus
2R 18094165..18094531 203..569 100 <- Plus
2R 18094584..18094671 570..661 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:28 Download gff for BO13576.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13981417..13981604 13..202 98 <- Plus
arm_2R 13981670..13982036 203..569 100 <- Plus
arm_2R 13982089..13982176 570..661 95   Plus

BO13576.complete Sequence

667 bp assembled on 2006-10-11

GenBank Submission: FJ632841

> BO13576.complete
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGG
CAAGCTTTCTAGACCAT

BO13576.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 636 CG5757-PB 1..633 17..649 3165 100 Plus
CG5757-RA 636 CG5757-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 992 CG5757-RB 167..799 17..649 3165 100 Plus
CG5757-RA 897 CG5757-RA 72..704 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18094165..18094532 465..98 1840 100 Minus
2R 25286936 2R 18093916..18094100 649..465 925 100 Minus
2R 25286936 2R 18094584..18094665 98..17 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:55:35 has no hits.

BO13576.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:46 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 1..636 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:04 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 37..679 7..655 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:00 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 72..704 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:46 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 37..679 7..655 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:04 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 72..704 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:04 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18094165..18094531 99..465 100 <- Minus
2R 18093912..18094099 466..651 98 <- Minus
2R 18094584..18094665 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:00 Download gff for BO13576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13982089..13982170 17..98 100   Minus
arm_2R 13981417..13981604 466..651 98 <- Minus
arm_2R 13981670..13982036 99..465 100 <- Minus

BO13576.pep Sequence

Translation from 16 to 667

> BO13576.pep
MSAGKRGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSI
GQVINSYLTNSKDLPDEVIHLMFSANRWEHINQVKEKLLEGTTLVVDRYS
FSGVAYSAAKGLDFDWCYAPERGLIKPDAVFYLRAPPNDLTHRGQYGKER
YEKVEFQGRVAEVFNRICSKEGSYFHQFDARQSVEDLHAQIASITEELLP
KVATRPLDTLSASFLDH

BO13576.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-PB 211 CG5757-PB 1..211 1..211 1095 100 Plus
CG5757-PA 211 CG5757-PA 1..211 1..211 1095 100 Plus