Clone Sequence Records
BO13576.5prime Sequence
665 bp (664 high quality bases) assembled on 2006-05-08
> BO13576.5prime
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGG
CAAGCTTTCTAGACC
BO13576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-PA | 636 | CG5757-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 992 | CG5757-RB | 167..799 | 17..649 | 3165 | 100 | Plus |
CG5757-RA | 897 | CG5757-RA | 72..704 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18094165..18094532 | 465..98 | 1840 | 100 | Minus |
2R | 25286936 | 2R | 18093916..18094100 | 649..465 | 925 | 100 | Minus |
2R | 25286936 | 2R | 18094584..18094665 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:14:02 has no hits.
BO13576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:12 Download gff for
BO13576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-PA | 1..636 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:23 Download gff for
BO13576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-PA | 1..636 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:01 Download gff for
BO13576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..708 | 7..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:43:01 Download gff for
BO13576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..708 | 7..655 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:43:01 Download gff for
BO13576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18094165..18094531 | 99..465 | 100 | <- | Minus |
2R | 18094584..18094671 | 7..98 | 95 | | Minus |
2R | 18093912..18094099 | 466..655 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:01 Download gff for
BO13576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13981417..13981604 | 466..655 | 98 | <- | Minus |
arm_2R | 13981670..13982036 | 99..465 | 100 | <- | Minus |
arm_2R | 13982089..13982176 | 7..98 | 95 | | Minus |
BO13576.3prime Sequence
665 bp (664 high quality bases) assembled on 2006-05-08
> BO13576.3prime
ATGGTCTAGAAAGCTTGCCGATAACGTGTCCAGAGGTCGGGTGGCCACTT
TGGGCAGGAGTTCCTCCGTAATGCTCGCTATCTGGGCATGTAAATCCTCT
ACAGACTGTCTGGCATCGAACTGGTGAAAATAGCTGCCCTCCTTGGAGCA
AATGCGGTTGAATACTTCGGCCACACGACCTTGGAATTCTACTTTCTCAT
AACGCTCTTTGCCGTATTGTCCTCGATGTGTAAGGTCGTTTGGTGGTGCT
CTTAGGTAAAATACAGCATCTGGTTTTATGAGCCCCCTTTCCGGAGCATA
GCACCAATCAAAGTCTAATCCTTTGGCTGCGCTATATGCCACGCCAGAGA
ACGAATATCGATCCACAACCAATGTGGTGCCCTCAAGCAGCTTCTCCTTC
ACCTGGTTTATGTGCTCCCAGCGGTTGGCGGAGAACATTAAGTGAATCAC
CTCATCCGGAAGATCCTTGCTGTTCGTTAAATAGGAGTTTATCACCTGAC
CAATGCTGGAACTGCGTTCCGGGAAATTCATGGGCAATGTCGGAATGCCC
TTCGATTTCAAGAGTTCAACCAACAGCCTGCTTTGAGTGGTCTTTCCACT
TCGATCACATCCTTCAAATATTATCAACGCTCCACGTTTTCCCGCGCTCA
TGTCGACTGATAACT
BO13576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-PA | 636 | CG5757-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 992 | CG5757-RB | 167..799 | 651..19 | 3165 | 100 | Minus |
CG5757-RA | 897 | CG5757-RA | 72..704 | 651..19 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18094165..18094532 | 203..570 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 18093916..18094100 | 19..203 | 925 | 100 | Plus |
2R | 25286936 | 2R | 18094584..18094665 | 570..651 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:16:02 has no hits.
BO13576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:11 Download gff for
BO13576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-PA | 1..636 | 18..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:21 Download gff for
BO13576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-PA | 1..636 | 18..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:28 Download gff for
BO13576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..708 | 13..661 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:19 Download gff for
BO13576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..708 | 13..661 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:19 Download gff for
BO13576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18093912..18094099 | 13..202 | 98 | <- | Plus |
2R | 18094165..18094531 | 203..569 | 100 | <- | Plus |
2R | 18094584..18094671 | 570..661 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:28 Download gff for
BO13576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13981417..13981604 | 13..202 | 98 | <- | Plus |
arm_2R | 13981670..13982036 | 203..569 | 100 | <- | Plus |
arm_2R | 13982089..13982176 | 570..661 | 95 | | Plus |
BO13576.complete Sequence
667 bp assembled on 2006-10-11
GenBank Submission: FJ632841
> BO13576.complete
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGG
CAAGCTTTCTAGACCAT
BO13576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 636 | CG5757-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
CG5757-RA | 636 | CG5757-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 992 | CG5757-RB | 167..799 | 17..649 | 3165 | 100 | Plus |
CG5757-RA | 897 | CG5757-RA | 72..704 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18094165..18094532 | 465..98 | 1840 | 100 | Minus |
2R | 25286936 | 2R | 18093916..18094100 | 649..465 | 925 | 100 | Minus |
2R | 25286936 | 2R | 18094584..18094665 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:35 has no hits.
BO13576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:46 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 1..636 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:04 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 37..679 | 7..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:00 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 72..704 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:46 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 37..679 | 7..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:04 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 72..704 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:04 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18094165..18094531 | 99..465 | 100 | <- | Minus |
2R | 18093912..18094099 | 466..651 | 98 | <- | Minus |
2R | 18094584..18094665 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:00 Download gff for
BO13576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13982089..13982170 | 17..98 | 100 | | Minus |
arm_2R | 13981417..13981604 | 466..651 | 98 | <- | Minus |
arm_2R | 13981670..13982036 | 99..465 | 100 | <- | Minus |
BO13576.pep Sequence
Translation from 16 to 667
> BO13576.pep
MSAGKRGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSI
GQVINSYLTNSKDLPDEVIHLMFSANRWEHINQVKEKLLEGTTLVVDRYS
FSGVAYSAAKGLDFDWCYAPERGLIKPDAVFYLRAPPNDLTHRGQYGKER
YEKVEFQGRVAEVFNRICSKEGSYFHQFDARQSVEDLHAQIASITEELLP
KVATRPLDTLSASFLDH
BO13576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-PB | 211 | CG5757-PB | 1..211 | 1..211 | 1095 | 100 | Plus |
CG5757-PA | 211 | CG5757-PA | 1..211 | 1..211 | 1095 | 100 | Plus |