Clone Sequence Records
BO13578.3prime Sequence
935 bp (791 high quality bases) assembled on 2006-05-08
> BO13578.3prime
ATGGTCTAGAAAGCTTGCGTTTGGTGTAGTGGAGAGCAGCACAAACATGA
CCCACAGATGTAGTAGGGCCACGTAGACGATCACAGAGACCCGCATCATG
GGATAGCGACGCAGAAACGTTCCCACCCGAATACCCATGGAGTCCGCCTG
GCGAAGGGCTCGCTTGAAGCGTCGTGCCACACGATTATCGAATGGACTTG
GATGCATGAGAAGCGGGAATTGTGCTTTGACATCATCTGTGCTGTTGAGC
ATAGTATGGCGGGAGCTGCCCCTTTGGCTCTCCATTTCCACCAAGTGCAT
GTTTTGCTGTAGCTGCGTCTGTGCCTTTTCGTGCTGTAGTCGCAGGGCAT
TTCTCTCACTCGTAACTCTTTCCAGAAGACTTTGACGTTCGACCAGTGAT
TGGGTTAAAGCCTTTAGCCGAGTCTCGTAATCGCTCTTGGCTCCCGTGTT
GGCTTCCTCGCTCAATCGCTGACGCATCTGCTGAAGCTGCTGCTCCCGCT
CCTGGAGTCGAGTGGCGGCAGCAGCCATTTGGTTACTAAGTTGCTGCCGC
AGTGAGGCCAGTTCCTGCGTGAGCACTCGCTGATCGGATTCGGAGGTCAC
ACTGTGTTCCCTTGCCTGTCGCAACTCCTTTGCTAGTGTTTCCTCGCGTT
GGCGGGCAGAGCTTAGTTCCACCTGTCGTTGTCTTTCCTGGGAAACGTAA
TCGTCCAGCTGCAAGCGCGCCTTTTGCAGTTCCTCGTTGGCATGCTCTAG
TTCTTGCTTAAGTGACTCGTGTTCAATTTGCAGAAAACGCGTTTCACTGT
CCTTGGACACCAGGTTTGGATCTGCGCCCTCCTCCGTGGGCTTCGCCTTC
ACTCTGCGATGAGGGAATCTTTTGCTTGCAGAGCTCGCTGAGCCTTGATA
CGGTATTCCTGAAGCTCCTGGCGCTGCTGCTCCGT
BO13578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17785-PA | 1551 | Golgin84-RA | 716..1548 | 851..19 | 4165 | 100 | Minus |
CG17785-PA | 1551 | Golgin84-RA | 631..715 | 935..851 | 400 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Golgin84-RA | 1814 | CG17785-RA | 693..1610 | 935..19 | 4550 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24356541..24357246 | 231..935 | 3465 | 99.7 | Plus |
3R | 32079331 | 3R | 24356274..24356486 | 19..231 | 1065 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 04:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2908 | 510..234 | 148 | 55.7 | Minus |
BO13578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:13 Download gff for
BO13578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17785-PA | 631..1551 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:24 Download gff for
BO13578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17785-PA | 631..1551 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:42 Download gff for
BO13578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 693..1613 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:26 Download gff for
BO13578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 693..1613 | 15..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:26 Download gff for
BO13578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24356271..24356485 | 15..230 | 99 | <- | Plus |
3R | 24356541..24357246 | 231..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:42 Download gff for
BO13578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20181993..20182207 | 15..230 | 99 | <- | Plus |
arm_3R | 20182263..20182968 | 231..935 | 99 | | Plus |
BO13578.5prime Sequence
801 bp (800 high quality bases) assembled on 2006-05-08
> BO13578.5prime
GAAGTTATCAGTCGACATGTCATCCTGGATCACAGGACTGGCGGACAAGG
CCGAAAACATTTTGAACAAGCTGGACCAAAATGCGGCAACGGCCCTGCAG
ACAGAGAACGCCACAGGTTCAGCGGATCCCATGCGTAGGAGCATGACGAG
CAGCACCCAATCACTGTCCACATCCCTGAAGTCCACTCTGTCGCCAGTGC
GGCGCTCGGGGGCCAATAGCTCATCAAGTGTAAAAAGCGATGGCGGGGTC
TCCGTGGTCACTAAGGACATGCGCCAAAAGATGACCACGTCGGCCAGTTT
CTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGG
CTGCCTTCAAGATCGCCCTGAATGAAATCACGGCCGAAAGAGATGAACTG
CGTCTGCGCTTGGAAGATCTTAATAACGAAACCGAAAAGTTTGATCTGCA
TCAACACACCCAGGTGCTGGAAGCTCTGGTTAAAAGTCTGTCCGAAGAGC
GGGACAAGGCGGTTCATGACTACAATGAGGCCCAGGCAGCTAACATGGCG
TATGTGCACTCCATCTCCGAACTGGAAACCAATCTGGCCAAGTTGCAGCA
GGAATACATAAGCGCCGCTCACAAATTGCAAATGCAAACAAAGGAAACGG
AGCAGCAGCGCCAGGAGCTTCAGGAATACCGTATCAAGGCTCAGCGAGCT
CTGCAAGCAAAGGATTCCCTCATCGCAGAGTTGAAGGCGAAGCCCACGGA
GGAGGGCGCAGATCCAAACCTGGTGTCCAAGGACAGTGAAACGCGTTTTC
T
BO13578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17785-PA | 1551 | Golgin84-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Golgin84-RA | 1814 | CG17785-RA | 63..847 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24357092..24357876 | 801..17 | 3925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:43:33 has no hits.
BO13578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:14 Download gff for
BO13578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17785-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:26 Download gff for
BO13578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17785-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:57 Download gff for
BO13578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 63..847 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:06 Download gff for
BO13578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 63..847 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:06 Download gff for
BO13578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24357092..24357876 | 17..801 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:57 Download gff for
BO13578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20182814..20183598 | 17..801 | 100 | | Minus |
BO13578.complete Sequence
1582 bp assembled on 2007-07-13
GenBank Submission: FJ632842
> BO13578.complete
GAAGTTATCAGTCGACATGTCATCCTGGATCACAGGACTGGCGGACAAGG
CCGAAAACATTTTGAACAAGCTGGACCAAAATGCGGCAACGGCCCTGCAG
ACAGAGAACGCCACAGGTTCAGCGGATCCCATGCGTAGGAGCATGACGAG
CAGCACCCAATCACTGTCCACATCCCTGAAGTCCACTCTGTCGCCAGTGC
GGCGCTCGGGGGCCAATAGCTCATCAAGTGTAAAAAGCGATGGCGGGGTC
TCCGTGGTCACTAAGGACATGCGCCAAAAGATGACCACGTCGGCCAGTTT
CTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGG
CTGCCTTCAAGATCGCCCTGAATGAAATCACGGCCGAAAGAGATGAACTG
CGTCTGCGCTTGGAAGATCTTAATAACGAAACCGAAAAGTTTGATCTGCA
TCAACACACCCAGGTGCTGGAAGCTCTGGTTAAAAGTCTGTCCGAAGAGC
GGGACAAGGCGGTTCATGACTACAATGAGGCCCAGGCAGCTAACATGGCG
TATGTGCACTCCATCTCCGAACTGGAAACCAATCTGGCCAAGTTGCAGCA
GGAATACATAAGCGCCGCTCACAAATTGCAAATGCAAACAAAGGAAACGG
AGCAGCAGCGCCAGGAGCTTCAGGAATACCGTATCAAGGCTCAGCGAGCT
CTGCAAGCAAAGGATTCCCTCATCGCAGAGTTGAAGGCGAAGCCCACGGA
GGAGGGCGCAGATCCAAACCTGGTGTCCAAGGACAGTGAAACGCGTTTTC
TGCAAATTGAACACGAGTCACTTAAGCAAGAACTAGAGCATGCCAACGAG
GAACTGCAAAAGGCGCGCTTGCAGCTGGACGATTACGTTTCCCAGGAAAG
ACAACGACAGGTGGAACTAAGCTCTGCCCGCCAACGCGAGGAAACACTAG
CAAAGGAGTTGCGACAGGCAAGGGAACACAGTGTGACCTCCGAATCCGAT
CAGCGAGTGCTCACGCAGGAACTGGCCTCACTGCGGCAGCAACTTAGTAA
CCAAATGGCTGCTGCCGCCACTCGACTCCAGGAGCGGGAGCAGCAGCTTC
AGCAGATGCGTCAGCGATTGAGCGAGGAAGCCAACACGGGAGCCAAGAGC
GATTACGAGACTCGGCTAAAGGCTTTAACCCAATCACTGGTCGAACGTCA
AAGTCTTCTGGAAAGAGTTACGAGTGAGAGAAATGCCCTGCGACTACAGC
ACGAAAAGGCACAGACGCAGCTACAGCAAAACATGCACTTGGTGGAAATG
GAGAGCCAAAGGGGCAGCTCCCGCCATACTATGCTCAACAGCACAGATGA
TGTCAAAGCACAATTCCCGCTTCTCATGCATCCAAGTCCATTCGATAATC
GTGTGGCACGACGCTTCAAGCGAGCCCTTCGCCAGGCGGACTCCATGGGT
ATTCGGGTGGGAACGTTTCTGCGTCGCTATCCCATGATGCGGGTCTCTGT
GATCGTCTACGTGGCCCTACTACATCTGTGGGTCATGTTTGTGCTGCTCT
CCACTACACCAAACGCAAGCTTTCTAGACCAT
BO13578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Golgin84-RA | 1551 | CG17785-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Golgin84-RA | 1814 | CG17785-RA | 63..1610 | 17..1564 | 7740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24356541..24357876 | 1352..17 | 6680 | 100 | Minus |
3R | 32079331 | 3R | 24356274..24356486 | 1564..1352 | 1065 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2908 | 1073..1349 | 148 | 55.7 | Plus |
BO13578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:51 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 1..1551 | 17..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:12 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 48..1598 | 17..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:49 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 63..1610 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:51 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 48..1598 | 17..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:19 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Golgin84-RA | 63..1610 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:19 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24356272..24356485 | 1353..1566 | 99 | <- | Minus |
3R | 24356541..24357876 | 17..1352 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:49 Download gff for
BO13578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20182263..20183598 | 17..1352 | 100 | | Minus |
arm_3R | 20181994..20182207 | 1353..1566 | 99 | <- | Minus |
BO13578.pep Sequence
Translation from 16 to 1582
> BO13578.pep
MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL
STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD
ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV
LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA
AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP
NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE
LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA
ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER
VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF
PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA
LLHLWVMFVLLSTTPNASFLDH
BO13578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Golgin84-PA | 516 | CG17785-PA | 1..516 | 1..516 | 2530 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 534..1005 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 537..1008 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 559..1030 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 588..1059 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 915..1421 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 918..1424 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 940..1446 | 5..475 | 167 | 19.9 | Plus |