Clone BO13578 Report

Search the DGRC for BO13578

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptGolgin84-RA
Protein status:BO13578.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO13578.3prime Sequence

935 bp (791 high quality bases) assembled on 2006-05-08

> BO13578.3prime
ATGGTCTAGAAAGCTTGCGTTTGGTGTAGTGGAGAGCAGCACAAACATGA
CCCACAGATGTAGTAGGGCCACGTAGACGATCACAGAGACCCGCATCATG
GGATAGCGACGCAGAAACGTTCCCACCCGAATACCCATGGAGTCCGCCTG
GCGAAGGGCTCGCTTGAAGCGTCGTGCCACACGATTATCGAATGGACTTG
GATGCATGAGAAGCGGGAATTGTGCTTTGACATCATCTGTGCTGTTGAGC
ATAGTATGGCGGGAGCTGCCCCTTTGGCTCTCCATTTCCACCAAGTGCAT
GTTTTGCTGTAGCTGCGTCTGTGCCTTTTCGTGCTGTAGTCGCAGGGCAT
TTCTCTCACTCGTAACTCTTTCCAGAAGACTTTGACGTTCGACCAGTGAT
TGGGTTAAAGCCTTTAGCCGAGTCTCGTAATCGCTCTTGGCTCCCGTGTT
GGCTTCCTCGCTCAATCGCTGACGCATCTGCTGAAGCTGCTGCTCCCGCT
CCTGGAGTCGAGTGGCGGCAGCAGCCATTTGGTTACTAAGTTGCTGCCGC
AGTGAGGCCAGTTCCTGCGTGAGCACTCGCTGATCGGATTCGGAGGTCAC
ACTGTGTTCCCTTGCCTGTCGCAACTCCTTTGCTAGTGTTTCCTCGCGTT
GGCGGGCAGAGCTTAGTTCCACCTGTCGTTGTCTTTCCTGGGAAACGTAA
TCGTCCAGCTGCAAGCGCGCCTTTTGCAGTTCCTCGTTGGCATGCTCTAG
TTCTTGCTTAAGTGACTCGTGTTCAATTTGCAGAAAACGCGTTTCACTGT
CCTTGGACACCAGGTTTGGATCTGCGCCCTCCTCCGTGGGCTTCGCCTTC
ACTCTGCGATGAGGGAATCTTTTGCTTGCAGAGCTCGCTGAGCCTTGATA
CGGTATTCCTGAAGCTCCTGGCGCTGCTGCTCCGT

BO13578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17785-PA 1551 Golgin84-RA 716..1548 851..19 4165 100 Minus
CG17785-PA 1551 Golgin84-RA 631..715 935..851 400 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-RA 1814 CG17785-RA 693..1610 935..19 4550 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24356541..24357246 231..935 3465 99.7 Plus
3R 32079331 3R 24356274..24356486 19..231 1065 100 Plus
Blast to na_te.dros performed 2015-02-01 04:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2908 510..234 148 55.7 Minus

BO13578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:13 Download gff for BO13578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17785-PA 631..1551 15..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:24 Download gff for BO13578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17785-PA 631..1551 15..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:42 Download gff for BO13578.3prime
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 693..1613 15..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:26 Download gff for BO13578.3prime
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 693..1613 15..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:26 Download gff for BO13578.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24356271..24356485 15..230 99 <- Plus
3R 24356541..24357246 231..935 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:42 Download gff for BO13578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20181993..20182207 15..230 99 <- Plus
arm_3R 20182263..20182968 231..935 99   Plus

BO13578.5prime Sequence

801 bp (800 high quality bases) assembled on 2006-05-08

> BO13578.5prime
GAAGTTATCAGTCGACATGTCATCCTGGATCACAGGACTGGCGGACAAGG
CCGAAAACATTTTGAACAAGCTGGACCAAAATGCGGCAACGGCCCTGCAG
ACAGAGAACGCCACAGGTTCAGCGGATCCCATGCGTAGGAGCATGACGAG
CAGCACCCAATCACTGTCCACATCCCTGAAGTCCACTCTGTCGCCAGTGC
GGCGCTCGGGGGCCAATAGCTCATCAAGTGTAAAAAGCGATGGCGGGGTC
TCCGTGGTCACTAAGGACATGCGCCAAAAGATGACCACGTCGGCCAGTTT
CTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGG
CTGCCTTCAAGATCGCCCTGAATGAAATCACGGCCGAAAGAGATGAACTG
CGTCTGCGCTTGGAAGATCTTAATAACGAAACCGAAAAGTTTGATCTGCA
TCAACACACCCAGGTGCTGGAAGCTCTGGTTAAAAGTCTGTCCGAAGAGC
GGGACAAGGCGGTTCATGACTACAATGAGGCCCAGGCAGCTAACATGGCG
TATGTGCACTCCATCTCCGAACTGGAAACCAATCTGGCCAAGTTGCAGCA
GGAATACATAAGCGCCGCTCACAAATTGCAAATGCAAACAAAGGAAACGG
AGCAGCAGCGCCAGGAGCTTCAGGAATACCGTATCAAGGCTCAGCGAGCT
CTGCAAGCAAAGGATTCCCTCATCGCAGAGTTGAAGGCGAAGCCCACGGA
GGAGGGCGCAGATCCAAACCTGGTGTCCAAGGACAGTGAAACGCGTTTTC
T

BO13578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17785-PA 1551 Golgin84-RA 1..785 17..801 3925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-RA 1814 CG17785-RA 63..847 17..801 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24357092..24357876 801..17 3925 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:43:33 has no hits.

BO13578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:14 Download gff for BO13578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17785-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:26 Download gff for BO13578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17785-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:57 Download gff for BO13578.5prime
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 63..847 17..801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:06 Download gff for BO13578.5prime
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 63..847 17..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:06 Download gff for BO13578.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24357092..24357876 17..801 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:57 Download gff for BO13578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20182814..20183598 17..801 100   Minus

BO13578.complete Sequence

1582 bp assembled on 2007-07-13

GenBank Submission: FJ632842

> BO13578.complete
GAAGTTATCAGTCGACATGTCATCCTGGATCACAGGACTGGCGGACAAGG
CCGAAAACATTTTGAACAAGCTGGACCAAAATGCGGCAACGGCCCTGCAG
ACAGAGAACGCCACAGGTTCAGCGGATCCCATGCGTAGGAGCATGACGAG
CAGCACCCAATCACTGTCCACATCCCTGAAGTCCACTCTGTCGCCAGTGC
GGCGCTCGGGGGCCAATAGCTCATCAAGTGTAAAAAGCGATGGCGGGGTC
TCCGTGGTCACTAAGGACATGCGCCAAAAGATGACCACGTCGGCCAGTTT
CTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGG
CTGCCTTCAAGATCGCCCTGAATGAAATCACGGCCGAAAGAGATGAACTG
CGTCTGCGCTTGGAAGATCTTAATAACGAAACCGAAAAGTTTGATCTGCA
TCAACACACCCAGGTGCTGGAAGCTCTGGTTAAAAGTCTGTCCGAAGAGC
GGGACAAGGCGGTTCATGACTACAATGAGGCCCAGGCAGCTAACATGGCG
TATGTGCACTCCATCTCCGAACTGGAAACCAATCTGGCCAAGTTGCAGCA
GGAATACATAAGCGCCGCTCACAAATTGCAAATGCAAACAAAGGAAACGG
AGCAGCAGCGCCAGGAGCTTCAGGAATACCGTATCAAGGCTCAGCGAGCT
CTGCAAGCAAAGGATTCCCTCATCGCAGAGTTGAAGGCGAAGCCCACGGA
GGAGGGCGCAGATCCAAACCTGGTGTCCAAGGACAGTGAAACGCGTTTTC
TGCAAATTGAACACGAGTCACTTAAGCAAGAACTAGAGCATGCCAACGAG
GAACTGCAAAAGGCGCGCTTGCAGCTGGACGATTACGTTTCCCAGGAAAG
ACAACGACAGGTGGAACTAAGCTCTGCCCGCCAACGCGAGGAAACACTAG
CAAAGGAGTTGCGACAGGCAAGGGAACACAGTGTGACCTCCGAATCCGAT
CAGCGAGTGCTCACGCAGGAACTGGCCTCACTGCGGCAGCAACTTAGTAA
CCAAATGGCTGCTGCCGCCACTCGACTCCAGGAGCGGGAGCAGCAGCTTC
AGCAGATGCGTCAGCGATTGAGCGAGGAAGCCAACACGGGAGCCAAGAGC
GATTACGAGACTCGGCTAAAGGCTTTAACCCAATCACTGGTCGAACGTCA
AAGTCTTCTGGAAAGAGTTACGAGTGAGAGAAATGCCCTGCGACTACAGC
ACGAAAAGGCACAGACGCAGCTACAGCAAAACATGCACTTGGTGGAAATG
GAGAGCCAAAGGGGCAGCTCCCGCCATACTATGCTCAACAGCACAGATGA
TGTCAAAGCACAATTCCCGCTTCTCATGCATCCAAGTCCATTCGATAATC
GTGTGGCACGACGCTTCAAGCGAGCCCTTCGCCAGGCGGACTCCATGGGT
ATTCGGGTGGGAACGTTTCTGCGTCGCTATCCCATGATGCGGGTCTCTGT
GATCGTCTACGTGGCCCTACTACATCTGTGGGTCATGTTTGTGCTGCTCT
CCACTACACCAAACGCAAGCTTTCTAGACCAT

BO13578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-RA 1551 CG17785-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-RA 1814 CG17785-RA 63..1610 17..1564 7740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24356541..24357876 1352..17 6680 100 Minus
3R 32079331 3R 24356274..24356486 1564..1352 1065 100 Minus
Blast to na_te.dros performed 2014-11-28 00:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2908 1073..1349 148 55.7 Plus

BO13578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:51 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1551 17..1568 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:12 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 48..1598 17..1568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:49 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 63..1610 17..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:51 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 48..1598 17..1568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:19 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 63..1610 17..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:19 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24356272..24356485 1353..1566 99 <- Minus
3R 24356541..24357876 17..1352 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:49 Download gff for BO13578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20182263..20183598 17..1352 100   Minus
arm_3R 20181994..20182207 1353..1566 99 <- Minus

BO13578.pep Sequence

Translation from 16 to 1582

> BO13578.pep
MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL
STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD
ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV
LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA
AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP
NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE
LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA
ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER
VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF
PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA
LLHLWVMFVLLSTTPNASFLDH

BO13578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-PA 516 CG17785-PA 1..516 1..516 2530 100 Plus
CLIP-190-PN 1598 CG5020-PN 534..1005 8..431 195 20.3 Plus
CLIP-190-PR 1601 CG5020-PR 537..1008 8..431 195 20.3 Plus
CLIP-190-PP 1623 CG5020-PP 559..1030 8..431 195 20.3 Plus
CLIP-190-PC 1652 CG5020-PC 588..1059 8..431 195 20.3 Plus
CLIP-190-PN 1598 CG5020-PN 915..1421 5..475 167 19.9 Plus
CLIP-190-PR 1601 CG5020-PR 918..1424 5..475 167 19.9 Plus
CLIP-190-PP 1623 CG5020-PP 940..1446 5..475 167 19.9 Plus