Clone Sequence Records
BO13579.3prime Sequence
672 bp (671 high quality bases) assembled on 2006-05-08
> BO13579.3prime
ATGGTCTAGAAAGGCTTGCGCAGCCGCAGGAGGAGGCGTCCTCCTCGTTG
GTCGCCGCGCCGCTGCTCGCAGTGTCCACCTGGAAGCTCTTGTGCTCCAG
TGCCTGCAGTTCCATTTTGGAGCGATTGGCGTGGACCAGTTGCCTAGAGA
TGTCACGGAACATCTCCTCCACACCGGCGCCGCTGCGACAGGAGGTCTTG
TACGTGGCACTGATCAGTGAGTGGCACTGCTCGCAGAAGGCCTCCACTTC
CTCATCGCTGACCTCCGGCTCCCTGCCATCCAGATCGCTCTTATTGCCAC
AGATGAAGATCTTGGCATTCTCTGCATAGGTCACAATGTCCAGCAAGTGC
TGCGACAGCGAGTGGAACGAAGCGGCGTTGTCCAAAGCAAAGACCAGGAT
GGCTCCCTCGGCGAACTTGTAGTACGAGGATGTGACCGAGGCCACACGCT
CCATGCCACCGGTGTCCCAGAGTTGGAGCTTGATCTGCTTTTCATTCACA
CTGTATTCCCTATCGATGTGGTCCAGTCCCAACGTGGATTTCCTGTCCGT
ATCCGTGATGAAGGTGTTGGTGGCGAAGCGCCGGAACAGGGAGCTCTTGC
CCACTCCGTAGTCGCCGCACAGGATCACCTTTTGTTTGGGTATGCGCATC
GTGGCCATGTCGACTGATAACT
BO13579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12015-PA | 642 | RabX6-RA | 1..639 | 658..20 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 1286 | CG12015-RB | 103..742 | 659..20 | 3200 | 100 | Minus |
RabX6-RA | 1286 | CG12015-RA | 103..742 | 659..20 | 3200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 690947..691407 | 480..20 | 2305 | 100 | Minus |
3L | 28110227 | 3L | 690619..690799 | 659..479 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:37:31 has no hits.
BO13579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:15 Download gff for
BO13579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-PA | 1..642 | 19..658 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:27 Download gff for
BO13579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12015-PA | 1..642 | 19..658 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:16 Download gff for
BO13579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 99..746 | 14..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:12 Download gff for
BO13579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 99..746 | 14..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:12 Download gff for
BO13579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 690615..690799 | 479..666 | 98 | -> | Minus |
3L | 690949..691411 | 14..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:16 Download gff for
BO13579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 690615..690799 | 479..666 | 98 | -> | Minus |
arm_3L | 690949..691411 | 14..478 | 99 | | Minus |
BO13579.5prime Sequence
672 bp (671 high quality bases) assembled on 2006-05-08
> BO13579.5prime
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCGCAAGCCTTTCTAGACC
BO13579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12015-PA | 642 | RabX6-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 1286 | CG12015-RB | 103..742 | 16..655 | 3200 | 100 | Plus |
RabX6-RA | 1286 | CG12015-RA | 103..742 | 16..655 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 690947..691407 | 195..655 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 690619..690799 | 16..196 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:03:46 has no hits.
BO13579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:16 Download gff for
BO13579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:28 Download gff for
BO13579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12015-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:03 Download gff for
BO13579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 99..746 | 9..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:31 Download gff for
BO13579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 99..746 | 9..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:31 Download gff for
BO13579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 690615..690799 | 9..196 | 98 | -> | Plus |
3L | 690949..691411 | 197..661 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:03 Download gff for
BO13579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 690615..690799 | 9..196 | 98 | -> | Plus |
arm_3L | 690949..691411 | 197..661 | 99 | | Plus |
BO13579.complete Sequence
674 bp assembled on 2008-08-15
GenBank Submission: MN238605
> BO13579.complete
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCGCAAGCCTTTCTAGACCAT
BO13579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 669 | CG12015-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
RabX6-RA | 642 | CG12015-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 1286 | CG12015-RB | 103..742 | 16..655 | 3200 | 100 | Plus |
RabX6-RA | 1286 | CG12015-RA | 103..742 | 16..655 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 690947..691407 | 195..655 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 690619..690799 | 16..196 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:05:30 has no hits.
BO13579.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:58 Download gff for
BO13579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 97..744 | 9..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:52:11 Download gff for
BO13579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 104..742 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:02 Download gff for
BO13579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 102..740 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:43 Download gff for
BO13579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 104..742 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:43 Download gff for
BO13579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 690620..690799 | 17..196 | 100 | -> | Plus |
3L | 690949..691407 | 197..657 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:52:11 Download gff for
BO13579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 690620..690799 | 17..196 | 100 | -> | Plus |
arm_3L | 690949..691407 | 197..657 | 99 | | Plus |
BO13579.pep Sequence
Translation from 16 to 673
> BO13579.pep
MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDR
EYSVNEKQIKLQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHS
LSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSDEEVEAFCEQCHSLIS
ATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSG
AATNEEDASSCGCASLSRP
BO13579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-PB | 222 | CG12015-PB | 1..216 | 1..216 | 1099 | 99.1 | Plus |
RabX6-PA | 213 | CG12015-PA | 1..213 | 1..213 | 1096 | 100 | Plus |
Rab14-PD | 215 | CG4212-PD | 13..215 | 10..211 | 271 | 34 | Plus |
Rab14-PA | 215 | CG4212-PA | 13..215 | 10..211 | 271 | 34 | Plus |
Rab14-PB | 239 | CG4212-PB | 37..239 | 10..211 | 271 | 34 | Plus |