Clone BO13579 Report

Search the DGRC for BO13579

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptRabX6-RA
Protein status:BO13579.pep: Imported from assembly
Sequenced Size:674

Clone Sequence Records

BO13579.3prime Sequence

672 bp (671 high quality bases) assembled on 2006-05-08

> BO13579.3prime
ATGGTCTAGAAAGGCTTGCGCAGCCGCAGGAGGAGGCGTCCTCCTCGTTG
GTCGCCGCGCCGCTGCTCGCAGTGTCCACCTGGAAGCTCTTGTGCTCCAG
TGCCTGCAGTTCCATTTTGGAGCGATTGGCGTGGACCAGTTGCCTAGAGA
TGTCACGGAACATCTCCTCCACACCGGCGCCGCTGCGACAGGAGGTCTTG
TACGTGGCACTGATCAGTGAGTGGCACTGCTCGCAGAAGGCCTCCACTTC
CTCATCGCTGACCTCCGGCTCCCTGCCATCCAGATCGCTCTTATTGCCAC
AGATGAAGATCTTGGCATTCTCTGCATAGGTCACAATGTCCAGCAAGTGC
TGCGACAGCGAGTGGAACGAAGCGGCGTTGTCCAAAGCAAAGACCAGGAT
GGCTCCCTCGGCGAACTTGTAGTACGAGGATGTGACCGAGGCCACACGCT
CCATGCCACCGGTGTCCCAGAGTTGGAGCTTGATCTGCTTTTCATTCACA
CTGTATTCCCTATCGATGTGGTCCAGTCCCAACGTGGATTTCCTGTCCGT
ATCCGTGATGAAGGTGTTGGTGGCGAAGCGCCGGAACAGGGAGCTCTTGC
CCACTCCGTAGTCGCCGCACAGGATCACCTTTTGTTTGGGTATGCGCATC
GTGGCCATGTCGACTGATAACT

BO13579.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12015-PA 642 RabX6-RA 1..639 658..20 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 1286 CG12015-RB 103..742 659..20 3200 100 Minus
RabX6-RA 1286 CG12015-RA 103..742 659..20 3200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691407 480..20 2305 100 Minus
3L 28110227 3L 690619..690799 659..479 905 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:37:31 has no hits.

BO13579.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:15 Download gff for BO13579.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-PA 1..642 19..658 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:27 Download gff for BO13579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12015-PA 1..642 19..658 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:16 Download gff for BO13579.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 99..746 14..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:12 Download gff for BO13579.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 99..746 14..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:12 Download gff for BO13579.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 690615..690799 479..666 98 -> Minus
3L 690949..691411 14..478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:16 Download gff for BO13579.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690615..690799 479..666 98 -> Minus
arm_3L 690949..691411 14..478 99   Minus

BO13579.5prime Sequence

672 bp (671 high quality bases) assembled on 2006-05-08

> BO13579.5prime
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCGCAAGCCTTTCTAGACC

BO13579.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12015-PA 642 RabX6-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 1286 CG12015-RB 103..742 16..655 3200 100 Plus
RabX6-RA 1286 CG12015-RA 103..742 16..655 3200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691407 195..655 2305 100 Plus
3L 28110227 3L 690619..690799 16..196 905 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:03:46 has no hits.

BO13579.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:16 Download gff for BO13579.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:28 Download gff for BO13579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12015-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:03 Download gff for BO13579.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 99..746 9..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:31 Download gff for BO13579.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 99..746 9..661 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:31 Download gff for BO13579.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 690615..690799 9..196 98 -> Plus
3L 690949..691411 197..661 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:03 Download gff for BO13579.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690615..690799 9..196 98 -> Plus
arm_3L 690949..691411 197..661 99   Plus

BO13579.complete Sequence

674 bp assembled on 2008-08-15

GenBank Submission: MN238605

> BO13579.complete
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCGCAAGCCTTTCTAGACCAT

BO13579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 669 CG12015-PB 1..639 17..655 3195 100 Plus
RabX6-RA 642 CG12015-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 1286 CG12015-RB 103..742 16..655 3200 100 Plus
RabX6-RA 1286 CG12015-RA 103..742 16..655 3200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691407 195..655 2305 100 Plus
3L 28110227 3L 690619..690799 16..196 905 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:05:30 has no hits.

BO13579.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:58 Download gff for BO13579.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 97..744 9..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:52:11 Download gff for BO13579.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 104..742 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:02 Download gff for BO13579.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 102..740 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:43 Download gff for BO13579.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 104..742 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:43 Download gff for BO13579.complete
Subject Subject Range Query Range Percent Splice Strand
3L 690620..690799 17..196 100 -> Plus
3L 690949..691407 197..657 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:52:11 Download gff for BO13579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690620..690799 17..196 100 -> Plus
arm_3L 690949..691407 197..657 99   Plus

BO13579.pep Sequence

Translation from 16 to 673

> BO13579.pep
MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDR
EYSVNEKQIKLQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHS
LSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSDEEVEAFCEQCHSLIS
ATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSG
AATNEEDASSCGCASLSRP

BO13579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-PB 222 CG12015-PB 1..216 1..216 1099 99.1 Plus
RabX6-PA 213 CG12015-PA 1..213 1..213 1096 100 Plus
Rab14-PD 215 CG4212-PD 13..215 10..211 271 34 Plus
Rab14-PA 215 CG4212-PA 13..215 10..211 271 34 Plus
Rab14-PB 239 CG4212-PB 37..239 10..211 271 34 Plus