Clone Sequence Records
BO13583.complete Sequence
1117 bp assembled on 2009-09-17
GenBank Submission: FJ632843
> BO13583.complete
GAAGTTATCAGTCGACATGTACAGTAGCAGCTTGCTGCCGGATCCGGCTG
TCTATCAGCCGGACACCCTGGACCTGAACACGGATGGAAAGGCGGCGGAT
TACTGGTTCAACTGCTTCCGCGACATGGTGGCCAAGTTCGCGAAGGTGGC
GGCCAAGTCACAGGAGGAGGATCACACGGCCACCCAGCGGGCGGAGCAGT
TCCAGGCGGCGTATCTGCAGCGGCTGGAGGAGCACCAGCGTAATGTGCCA
GTCAACAAGGGCAAGGTGATTCTAGGCACCAGTGAGCTTCTCAAGCTAAA
CGAAACCCTGTTGCGCCGCTACGGATTTACAGATCCCTGGCTGAGACAAA
AGAGGCTGGAAAATGCATCGGCTGTTGCCCGCCTGAAGCAGCGTCTGCAG
GAATTGGATGCCCTGGCGGATGAGGACACAAGGTGGACGGAGCTGGTACG
CGGTGTCCTCGCCGGCAACATGTTTGACTGGGGCGCACAGGCCATATCTA
ACATACTGGAGCAGGACAGCAATTTCGGACTTCATTCAGCCCTGGATCGC
ATTGAGAAGCGACCCTGGTTGCTTGACAACCTGGACAGCTGGTTGAATCG
CCTCAAGGGCGAGCCACACAAGTGCGCCGTGGTCTTTGTGGACAACAGCG
GCGTGGATGTGGTTCTGGGTGTGCTTCCCTTTGTCCGTGGACTGCTGAAA
CGTGGCACCAAGGTGCTGCTCTGCGCCAACAGTGAACCTGCTCTAAATGA
TGTGACCAGCGAGGAGCTGAAATCCTTGCTGGACGACTGCTCGCGCGAGT
GTGAGGTCCTGGAGCAGGCCTGGTCAAAGGGACAACTACTGGTCTATGCA
AATGGACAGACTGGTCCCTGCCTGGATATGCGCACTCTCCCCAAGGAGCT
GTGCGACGCCATCGCCGCCAATGAGACTGACCTGCTTGTGATTGAGGGCA
TGGGACGCGCCCTGCACACAAATCTGAATGCCCGCTTCGGCTGCGAGACC
CTCAAGTTGGCCGTGATAAAAAACAAATGGCTGGCCAAGTACCTGGGCGG
CGAGGATATGTTCGCCGTCGTCTGCAAGTTCGAACCGGCTGCGCCCAGCG
CAAGCTTTCTAGACCAT
BO13583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-RB | 1086 | CG5828-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| CG5828-RA | 1086 | CG5828-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-RB | 1935 | CG5828-RB | 131..1213 | 17..1099 | 5415 | 100 | Plus |
| CG5828-RA | 1428 | CG5828-RA | 95..1177 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5094106..5095188 | 17..1099 | 5415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:38:30 has no hits.
BO13583.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:07 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 1..1086 | 17..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:00 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 86..1168 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:31 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 95..1177 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:45 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 86..1168 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:25 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 95..1177 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:25 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5094106..5095188 | 17..1101 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:31 Download gff for
BO13583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5094106..5095188 | 17..1101 | 99 | | Plus |
BO13583.3prime Sequence
891 bp (811 high quality bases) assembled on 2006-05-08
> BO13583.3prime
ATGGTCTAGAAAGCTTGCGCTGGGCGCAGCCGGTTCGAACTTGCAGACGA
CGGCGAACATATCCTCGCCGCCCAGGTACTTGGCCAGCCATTTGTTTTTT
ATCACGGCCAACTTGAGGGTCTCGCAGCCGAAGCGGGCATTCAGATTTGT
GTGCAGGGCGCGTCCCATGCCCTCAATCACAAGCAGGTCAGTCTCATTGG
CGGCGATGGCGTCGCACAGCTCCTTGGGGAGAGTGCGCATATCCAGGCAG
GGACCAGTCTGTCCATTTGCATAGACCAGTAGTTGTCCCTTTGACCAGGC
CTGCTCCAGGACCTCACACTCGCGCGAGCAGTCGTCCAGCAAGGATTTCA
GCTCCTCGCTGGTCACATCATTTAGAGCAGGTTCACTGTTGGCGCAGAGC
AGCACCTTGGTGCCACGTTTCAGCAGTCCACGGACAAAGGGAAGCACACC
CAGAACCACATCCACGCCGCTGTTGTCCACAAAGACCACGGCGCACTTGT
GTGGCTCGCCCTTGAGGCGATTCAACCAGCTGTCCAGGTTGTCAAGCAAC
CAGGGTCGCTTCTCAATGCGATCCAGGGCTGAATGAAGTCCGAAATTGCT
GTCCTGCTCCAGTATGTTAGATATGGCCTGTGCGCCCCAGTCAAACATGT
TGCCGGCGAGGACACCGCGTACCAGCTCCGTCCACCTTGTGTCCTCATCC
GCCAGGGCATCCAATTCCTGCAGACGCTGCTTCAGGCGGGCAACAGCCGA
TGCATTTTCCAGCCTCTTTTTGTCTCAGCCAGGGATCTGTAAATCCGTAG
CGGCGCAACAGGGTTTCGTTTAGCTTGAGAAGCTCACTGGTGCCTAGAAT
CCCCTTGCCCTTGTTGACTGGCACATTACGCTGGTGCTCCT
BO13583.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-PA | 1086 | CG5828-RA | 332..1083 | 770..19 | 3760 | 100 | Minus |
| CG5828-PA | 1086 | CG5828-RA | 212..335 | 891..768 | 595 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-RB | 1935 | CG5828-RB | 342..1213 | 891..19 | 4325 | 99.8 | Minus |
| CG5828-RA | 1428 | CG5828-RA | 306..1177 | 891..19 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5094317..5095188 | 891..19 | 4300 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:17:03 has no hits.
BO13583.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:21 Download gff for
BO13583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-PA | 212..1086 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:36 Download gff for
BO13583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-PA | 212..1086 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:01 Download gff for
BO13583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 306..1177 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:51 Download gff for
BO13583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 306..1177 | 19..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:51 Download gff for
BO13583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5094317..5095188 | 19..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:01 Download gff for
BO13583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5094317..5095188 | 19..891 | 99 | | Minus |
BO13583.5prime Sequence
704 bp (696 high quality bases) assembled on 2006-05-08
> BO13583.5prime
GAAGTTATCAGTCGACATGTACAGTAGCAGCTTGCTGCCGGATCCGGCTG
TCTATCAGCCGGACACCCTGGACCTGAACACGGATGGAAAGGCGGCGGAT
TACTGGTTCAACTGCTTCCGCGACATGGTGGCCAAGTTCGCGAAGGTGGC
GGCCAAGTCACAGGAGGAGGATCACACGGCCACCCAGCGGGCGGAGCAGT
TCCAGGCGGCGTATCTGCAGCGGCTGGAGGAGCACCAGCGTAATGTGCCA
GTCAACAAGGGCAAGGTGATTCTAGGCACCAGTGAGCTTCTCAAGCTAAA
CGAAACCCTGTTGCGCCGCTACGGATTTACAGATCCCTGGCTGAGACAAA
AGAGGCTGGAAAATGCATCGGCTGTTGCCCGCCTGAAGCAGCGTCTGCAG
GAATTGGATGCCCTGGCGGATGAGGACACAAGGTGGACGGAGCTGGTACG
CGGTGTCCTCGCCGGCAACATGTTTGACTGGGGCGCACAGGCCATATCTA
ACATACTGGAGCAGGACAGCAATTTCGGACTTCATTCAGCCCTGGATCGC
ATTGAGAAGCGACCCTGGTTGCTTGACAACCTGGACAGCTGGTTGAATCG
CCTCAAGGGCGAGCCACACAAGTGCGCCGTGGTCTTTGTGGACAACAGCG
GCGTGGATGTGGTTCTGGGTGTGCTTCCCTTTGTCCGTGGACTGCTGAAA
CGTG
BO13583.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-PA | 1086 | CG5828-RA | 1..688 | 17..704 | 3440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-RB | 1935 | CG5828-RB | 131..818 | 17..704 | 3440 | 100 | Plus |
| CG5828-RA | 1428 | CG5828-RA | 95..782 | 17..704 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5094106..5094793 | 17..704 | 3440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:43:43 has no hits.
BO13583.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:22 Download gff for
BO13583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-PA | 1..688 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:38 Download gff for
BO13583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-PA | 1..688 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:00 Download gff for
BO13583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 89..782 | 11..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:31 Download gff for
BO13583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5828-RA | 89..782 | 11..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:31 Download gff for
BO13583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5094100..5094793 | 11..704 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:00 Download gff for
BO13583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5094100..5094793 | 11..704 | 99 | | Plus |
BO13583.pep Sequence
Translation from 16 to 1117
> BO13583.pep
MYSSSLLPDPAVYQPDTLDLNTDGKAADYWFNCFRDMVAKFAKVAAKSQE
EDHTATQRAEQFQAAYLQRLEEHQRNVPVNKGKVILGTSELLKLNETLLR
RYGFTDPWLRQKRLENASAVARLKQRLQELDALADEDTRWTELVRGVLAG
NMFDWGAQAISNILEQDSNFGLHSALDRIEKRPWLLDNLDSWLNRLKGEP
HKCAVVFVDNSGVDVVLGVLPFVRGLLKRGTKVLLCANSEPALNDVTSEE
LKSLLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIA
ANETDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFA
VVCKFEPAAPSASFLDH
BO13583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5828-PB | 361 | CG5828-PB | 1..361 | 1..361 | 1885 | 100 | Plus |
| CG5828-PA | 361 | CG5828-PA | 1..361 | 1..361 | 1885 | 100 | Plus |
