Clone Sequence Records
BO13585.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13585.3prime
ATGGTCTAGAAAGCTTGCCTGGAGATGGTGGCTCTGCTTGCACTGCCGCA
GCGCCTCGTTGAATCCCTCGCAGAGGGTAAGATCCGCCTGACCCTGGGCG
CACTGGATGAACTGTTTGAGCTCCCAGGCGCAGGCTCCCTGCGGCTCATT
GGGCTGCTGCTGCTGGGCGTAGTATGGCTGCTGGGGGGCAGGAGCGGCTG
CCGCCGGAGCGGGAGCAGCGGCCTCCTTGTCGCCAGATCCGCTGAACAGC
GAGGTCAATCCATGACCCACGGTGTGTCCAATGGCTGAGCCCACGGCCAC
GCCTCCAGCGGTGGCGGCCATCTGCTGGAACATCGATGGCTGCTGCGGTG
CCGGCATGCCGACGGCACTGGGAGGAGCGCTCATGGGCGCCGGAACAGGG
GCAGAGGCGGCCGGTGCTGGGGCACGTGTCTGGACAGGAGCCGGGGCCGG
GGCGGGGGCACGGGCCTGCACAGGTGCGGTGCGACGAGTGGAGGGCGGGG
GACTGGCTGAACGTCCACGGCGAACCATGTCGACTGATAACT
BO13585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-PA | 513 | CG5010-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-RA | 997 | CG5010-RA | 137..646 | 528..19 | 2550 | 100 | Minus |
CG5010-RB | 1260 | CG5010-RB | 447..909 | 481..19 | 2315 | 100 | Minus |
CG5010-RB | 1260 | CG5010-RB | 107..153 | 528..482 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17149833..17150296 | 482..19 | 2320 | 100 | Minus |
X | 23542271 | X | 17149137..17149183 | 528..482 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:46:19 has no hits.
BO13585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:25 Download gff for
BO13585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:42 Download gff for
BO13585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:07 Download gff for
BO13585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 129..646 | 19..536 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:30 Download gff for
BO13585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 129..646 | 19..536 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:30 Download gff for
BO13585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17149129..17149183 | 482..536 | 92 | -> | Minus |
X | 17149834..17150296 | 19..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:07 Download gff for
BO13585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17043162..17043216 | 482..536 | 92 | -> | Minus |
arm_X | 17043867..17044329 | 19..481 | 100 | | Minus |
BO13585.5prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13585.5prime
GAAGTTATCAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGC
CCTCCACTCGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCC
CCGGCTCCTGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGT
TCCGGCGCCCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGC
AGCAGCCATCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCC
GTGGGCTCAGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTT
CAGCGGATCTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCG
CTCCTGCCCCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAG
CCGCAGGGAGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCA
GGGTCAGGCGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGC
AGTGCAAGCAGAGCCACCATCTCCAGGCAAGCTTTCTAGACC
BO13585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-PA | 513 | CG5010-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-RA | 997 | CG5010-RA | 137..646 | 17..526 | 2550 | 100 | Plus |
CG5010-RB | 1260 | CG5010-RB | 447..909 | 64..526 | 2315 | 100 | Plus |
CG5010-RB | 1260 | CG5010-RB | 107..153 | 17..63 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17149833..17150296 | 63..526 | 2320 | 100 | Plus |
X | 23542271 | X | 17149137..17149183 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:27:04 has no hits.
BO13585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:26 Download gff for
BO13585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:43 Download gff for
BO13585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:05 Download gff for
BO13585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 129..646 | 9..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:55 Download gff for
BO13585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 129..646 | 9..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:55 Download gff for
BO13585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17149129..17149183 | 9..63 | 92 | -> | Plus |
X | 17149834..17150296 | 64..526 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:05 Download gff for
BO13585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17043162..17043216 | 9..63 | 92 | -> | Plus |
arm_X | 17043867..17044329 | 64..526 | 100 | | Plus |
BO13585.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ632844
> BO13585.complete
GAAGTTATCAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGC
CCTCCACTCGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCC
CCGGCTCCTGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGT
TCCGGCGCCCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGC
AGCAGCCATCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCC
GTGGGCTCAGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTT
CAGCGGATCTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCG
CTCCTGCCCCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAG
CCGCAGGGAGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCA
GGGTCAGGCGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGC
AGTGCAAGCAGAGCCACCATCTCCAGGCAAGCTTTCTAGACCAT
BO13585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-RA | 513 | CG5010-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
CG5010-RB | 369 | CG5010-PB | 1..366 | 161..526 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-RA | 997 | CG5010-RA | 137..646 | 17..526 | 2550 | 100 | Plus |
CG5010-RB | 1260 | CG5010-RB | 447..909 | 64..526 | 2315 | 100 | Plus |
CG5010-RB | 1260 | CG5010-RB | 107..153 | 17..63 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17149833..17150296 | 63..526 | 2320 | 100 | Plus |
X | 23542271 | X | 17149137..17149183 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:09 has no hits.
BO13585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:12 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:23 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 92..609 | 9..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:33 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 137..646 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:12 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 92..609 | 9..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:00 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5010-RA | 137..646 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:00 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17149137..17149183 | 17..63 | 100 | -> | Plus |
X | 17149834..17150296 | 64..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:33 Download gff for
BO13585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17043170..17043216 | 17..63 | 100 | -> | Plus |
arm_X | 17043867..17044329 | 64..528 | 99 | | Plus |
BO13585.pep Sequence
Translation from 16 to 544
> BO13585.pep
MVRRGRSASPPPSTRRTAPVQARAPAPAPAPVQTRAPAPAASAPVPAPMS
APPSAVGMPAPQQPSMFQQMAATAGGVAVGSAIGHTVGHGLTSLFSGSGD
KEAAAPAPAAAAPAPQQPYYAQQQQPNEPQGACAWELKQFIQCAQGQADL
TLCEGFNEALRQCKQSHHLQASFLDH
BO13585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5010-PA | 170 | CG5010-PA | 1..170 | 1..170 | 894 | 100 | Plus |
CG5010-PB | 122 | CG5010-PB | 1..122 | 49..170 | 648 | 100 | Plus |
CG31007-PA | 176 | CG31007-PA | 48..176 | 42..169 | 232 | 37.4 | Plus |
CG31008-PA | 114 | CG31008-PA | 2..114 | 37..169 | 174 | 30.8 | Plus |