Clone BO13585 Report

Search the DGRC for BO13585

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5010-RA
Protein status:BO13585.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO13585.3prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13585.3prime
ATGGTCTAGAAAGCTTGCCTGGAGATGGTGGCTCTGCTTGCACTGCCGCA
GCGCCTCGTTGAATCCCTCGCAGAGGGTAAGATCCGCCTGACCCTGGGCG
CACTGGATGAACTGTTTGAGCTCCCAGGCGCAGGCTCCCTGCGGCTCATT
GGGCTGCTGCTGCTGGGCGTAGTATGGCTGCTGGGGGGCAGGAGCGGCTG
CCGCCGGAGCGGGAGCAGCGGCCTCCTTGTCGCCAGATCCGCTGAACAGC
GAGGTCAATCCATGACCCACGGTGTGTCCAATGGCTGAGCCCACGGCCAC
GCCTCCAGCGGTGGCGGCCATCTGCTGGAACATCGATGGCTGCTGCGGTG
CCGGCATGCCGACGGCACTGGGAGGAGCGCTCATGGGCGCCGGAACAGGG
GCAGAGGCGGCCGGTGCTGGGGCACGTGTCTGGACAGGAGCCGGGGCCGG
GGCGGGGGCACGGGCCTGCACAGGTGCGGTGCGACGAGTGGAGGGCGGGG
GACTGGCTGAACGTCCACGGCGAACCATGTCGACTGATAACT

BO13585.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-PA 513 CG5010-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 997 CG5010-RA 137..646 528..19 2550 100 Minus
CG5010-RB 1260 CG5010-RB 447..909 481..19 2315 100 Minus
CG5010-RB 1260 CG5010-RB 107..153 528..482 235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17149833..17150296 482..19 2320 100 Minus
X 23542271 X 17149137..17149183 528..482 235 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:46:19 has no hits.

BO13585.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:25 Download gff for BO13585.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:42 Download gff for BO13585.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:07 Download gff for BO13585.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..646 19..536 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:30 Download gff for BO13585.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..646 19..536 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:30 Download gff for BO13585.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17149129..17149183 482..536 92 -> Minus
X 17149834..17150296 19..481 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:07 Download gff for BO13585.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17043162..17043216 482..536 92 -> Minus
arm_X 17043867..17044329 19..481 100   Minus

BO13585.5prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13585.5prime
GAAGTTATCAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGC
CCTCCACTCGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCC
CCGGCTCCTGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGT
TCCGGCGCCCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGC
AGCAGCCATCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCC
GTGGGCTCAGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTT
CAGCGGATCTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCG
CTCCTGCCCCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAG
CCGCAGGGAGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCA
GGGTCAGGCGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGC
AGTGCAAGCAGAGCCACCATCTCCAGGCAAGCTTTCTAGACC

BO13585.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-PA 513 CG5010-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 997 CG5010-RA 137..646 17..526 2550 100 Plus
CG5010-RB 1260 CG5010-RB 447..909 64..526 2315 100 Plus
CG5010-RB 1260 CG5010-RB 107..153 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17149833..17150296 63..526 2320 100 Plus
X 23542271 X 17149137..17149183 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:27:04 has no hits.

BO13585.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:26 Download gff for BO13585.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:43 Download gff for BO13585.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:05 Download gff for BO13585.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..646 9..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:55 Download gff for BO13585.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..646 9..526 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:55 Download gff for BO13585.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17149129..17149183 9..63 92 -> Plus
X 17149834..17150296 64..526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:05 Download gff for BO13585.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17043162..17043216 9..63 92 -> Plus
arm_X 17043867..17044329 64..526 100   Plus

BO13585.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ632844

> BO13585.complete
GAAGTTATCAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGC
CCTCCACTCGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCC
CCGGCTCCTGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGT
TCCGGCGCCCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGC
AGCAGCCATCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCC
GTGGGCTCAGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTT
CAGCGGATCTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCG
CTCCTGCCCCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAG
CCGCAGGGAGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCA
GGGTCAGGCGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGC
AGTGCAAGCAGAGCCACCATCTCCAGGCAAGCTTTCTAGACCAT

BO13585.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 513 CG5010-PA 1..510 17..526 2550 100 Plus
CG5010-RB 369 CG5010-PB 1..366 161..526 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 997 CG5010-RA 137..646 17..526 2550 100 Plus
CG5010-RB 1260 CG5010-RB 447..909 64..526 2315 100 Plus
CG5010-RB 1260 CG5010-RB 107..153 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17149833..17150296 63..526 2320 100 Plus
X 23542271 X 17149137..17149183 17..63 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:42:09 has no hits.

BO13585.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:12 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:23 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 92..609 9..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:33 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 137..646 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:12 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 92..609 9..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:00 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 137..646 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:00 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
X 17149137..17149183 17..63 100 -> Plus
X 17149834..17150296 64..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:33 Download gff for BO13585.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17043170..17043216 17..63 100 -> Plus
arm_X 17043867..17044329 64..528 99   Plus

BO13585.pep Sequence

Translation from 16 to 544

> BO13585.pep
MVRRGRSASPPPSTRRTAPVQARAPAPAPAPVQTRAPAPAASAPVPAPMS
APPSAVGMPAPQQPSMFQQMAATAGGVAVGSAIGHTVGHGLTSLFSGSGD
KEAAAPAPAAAAPAPQQPYYAQQQQPNEPQGACAWELKQFIQCAQGQADL
TLCEGFNEALRQCKQSHHLQASFLDH

BO13585.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-PA 170 CG5010-PA 1..170 1..170 894 100 Plus
CG5010-PB 122 CG5010-PB 1..122 49..170 648 100 Plus
CG31007-PA 176 CG31007-PA 48..176 42..169 232 37.4 Plus
CG31008-PA 114 CG31008-PA 2..114 37..169 174 30.8 Plus