Clone Sequence Records
BO13587.3prime Sequence
874 bp (834 high quality bases) assembled on 2006-05-08
> BO13587.3prime
ATGGTCTAGAAAGCTTGCAACTGTGCTCAGCACAACTGCTTCCTTGGGCA
ACAGCAGCACGGAGTTGGCAAAGGTGAGGTCGTTCTTGCGACGCACACTC
TTATCATTCACCACCACATATTGCAGTTGCGTGGTTATGGAGGTGAAGAC
AGAGTCCAAGTTGATCGATTCCACATCATCGTTGATGTTGATGAGGGTGA
TGTACGACTTGTAGCCCGCCAAAGATCGCTTGAAGGCCAGCACATTTGGA
CCAATGGCTGTTACGGAGACATCACCCTGCTTCAAAGTAGGCTCATCACG
CAGAGCCCGCAGCTGCTTGTAGACGTTCAGGTGGCTAAGGGCTATTCCAC
GCTCCTTCTTCACATTGACCAACTTGTAGTTGCTGGCCACAGGCAGCCAG
GTTACCGAGGCGTTGGAGAACCCGGCGTTGACCTCGTCGCTCCACTGGAA
TGGAGTGCGCACTGGGTCGCGAGTGAGGCGCTCAAACTCCTGTTCGTTCG
ATTGGCAGGCTTGAGGGTCCACGGTGTCCTCCCAGCTGATCCAAACGTCG
GTCATACCCATCTCCTCGCCCTGGTAGGTCACACTCACGCCGGGCAGGCC
CAGTATGATCATGTTGCAGGCGTCGATGCGATCGGCGCCCAATCGGGAGC
CAATGCGACTCTGGTCGTGGTTGCCGAACACCCAGTTAGCCACCTGACCT
TCTGGCATGTTGTCCAGCCAGTTGTGGATCAGCTCCGAGTAATGGTAGGC
ATCGGAGCTGTAGCTGATCTTGGCCAGCAGCTCGAAATTGAAGGGGATCT
GGGAGCCCAGGTGAGTGCCATTTCCATAGTACTGCATCAAAACTTCCAGA
GGAGAGTAGGCCTCGGTGAGCAAG
BO13587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8695-PA | 1725 | LvpL-RA | 869..1722 | 872..19 | 4270 | 100 | Minus |
CG8696-PA | 1734 | LvpH-RA | 1186..1232 | 567..521 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1795 | CG8695-RA | 905..1758 | 872..19 | 4270 | 100 | Minus |
Mal-A5-RC | 1988 | CG30359-RC | 1299..1378 | 597..518 | 205 | 83.8 | Minus |
Mal-A5-RB | 2102 | CG30359-RB | 1356..1435 | 597..518 | 205 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8456281..8456926 | 227..872 | 3230 | 100 | Plus |
2R | 25286936 | 2R | 8456072..8456216 | 83..227 | 725 | 100 | Plus |
2R | 25286936 | 2R | 8455946..8456009 | 19..82 | 320 | 100 | Plus |
2R | 25286936 | 2R | 8450653..8450711 | 521..579 | 205 | 89.8 | Plus |
2R | 25286936 | 2R | 8464226..8464305 | 597..518 | 205 | 83.8 | Minus |
2R | 25286936 | 2R | 8473222..8473295 | 597..524 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:21:46 has no hits.
BO13587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:28 Download gff for
BO13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-PA | 867..1725 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:46 Download gff for
BO13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8695-PA | 867..1725 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:49 Download gff for
BO13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 903..1764 | 12..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:12 Download gff for
BO13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 903..1764 | 12..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:12 Download gff for
BO13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8456072..8456215 | 83..226 | 100 | <- | Plus |
2R | 8455940..8456009 | 12..82 | 95 | <- | Plus |
2R | 8456281..8456927 | 227..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:49 Download gff for
BO13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4343445..4343514 | 12..82 | 95 | <- | Plus |
arm_2R | 4343577..4343720 | 83..226 | 100 | <- | Plus |
arm_2R | 4343786..4344432 | 227..874 | 99 | | Plus |
BO13587.5prime Sequence
936 bp (799 high quality bases) assembled on 2006-05-08
> BO13587.5prime
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCGATC
AACCCGAGACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAA
ATAGACGCCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTA
CTCTCCTCTGGAAGTTTTGATGCAGTACTATGGAAA
BO13587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8695-PA | 1725 | LvpL-RA | 1..920 | 17..936 | 4600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1795 | CG8695-RA | 36..956 | 16..936 | 4605 | 100 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 101..453 | 430 | 75.1 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 101..453 | 430 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8456875..8457649 | 936..162 | 3875 | 100 | Minus |
2R | 25286936 | 2R | 8457707..8457857 | 166..16 | 755 | 100 | Minus |
2R | 25286936 | 2R | 8463133..8463401 | 185..453 | 340 | 75.1 | Plus |
2R | 25286936 | 2R | 8459103..8459264 | 293..454 | 300 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:51:49 has no hits.
BO13587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:29 Download gff for
BO13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-PA | 1..917 | 17..933 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:48 Download gff for
BO13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8695-PA | 1..917 | 17..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:04 Download gff for
BO13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 33..953 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:10 Download gff for
BO13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 33..953 | 10..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:10 Download gff for
BO13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8456878..8457646 | 165..933 | 100 | <- | Minus |
2R | 8457709..8457860 | 10..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:04 Download gff for
BO13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4344383..4345151 | 165..933 | 100 | <- | Minus |
arm_2R | 4345214..4345365 | 10..164 | 98 | | Minus |
BO13587.complete Sequence
1756 bp assembled on 2007-10-31
GenBank Submission: FJ632845
> BO13587.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCGATC
AACCCGAGACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAA
ATAGACGCCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTA
CTCTCCTCTGGAAGTTTTGATGCAGTACTATGGAAATGGCACTCACCTGG
GCTCCCAGATCCCCTTCAATTTCGAGCTGCTGGCCAAGATCAGCTACAGC
TCCGATGCCTACCATTACTCGGAGCTGATCCACAACTGGCTGGACAACAT
GCCAGAAGGTCAGGTGGCTAACTGGGTGTTCGGCAACCACGACCAGAGTC
GCATTGGCTCCCGATTGGGCGCCGATCGCATCGACGCCTGCAACATGATC
ATACTGGGCCTGCCCGGCGTGAGTGTGACCTACCAGGGCGAGGAGATGGG
TATGACCGACGTTTGGATCAGCTGGGAGGACACCGTGGACCCTCAAGCCT
GCCAATCGAACGAACAGGAGTTTGAGCGCCTCACTCGCGACCCAGTGCGC
ACTCCATTCCAGTGGAGCGACGAGGTCAACGCCGGGTTCTCCAACGCCTC
GGTAACCTGGCTGCCTGTGGCCAGCAACTACAAGTTGGTCAATGTGAAGA
AGGAGCGTGGAATAGCCCTTAGCCACCTGAACGTCTACAAGCAGCTGCGG
GCTCTGCGTGATGAGCCTACTTTGAAGCAGGGTGATGTCTCCGTAACAGC
CATTGGTCCAAATGTGCTGGCCTTCAAGCGATCTTTGGCGGGCTACAAGT
CGTACATCACCCTCATCAACATCAACGATGATGTGGAATCGATCAACTTG
GACTCTGTCTTCACCTCCATAACCACGCAACTGCAATATGTGGTGGTGAA
TGATAAGAGTGTGCGTCGCAAGAACGACCTCACCTTTGCCAACTCCGTGC
TGCTGTTGCCCAAGGAAGCAGTTGTGCTGAGCACAGTTGCAAGCTTTCTA
GACCAT
BO13587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1725 | CG8695-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 148..500 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RA | 1893 | CG30359-PA | 148..500 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 1207..1286 | 1160..1239 | 205 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1795 | CG8695-RA | 36..1758 | 16..1738 | 8615 | 100 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 1299..1378 | 1160..1239 | 205 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8456281..8457649 | 1530..162 | 6845 | 100 | Minus |
2R | 25286936 | 2R | 8457707..8457857 | 166..16 | 755 | 100 | Minus |
2R | 25286936 | 2R | 8456072..8456216 | 1674..1530 | 725 | 100 | Minus |
2R | 25286936 | 2R | 8463133..8463401 | 185..453 | 340 | 75.1 | Plus |
2R | 25286936 | 2R | 8455946..8456009 | 1738..1675 | 320 | 100 | Minus |
2R | 25286936 | 2R | 8453829..8454035 | 185..391 | 315 | 76.8 | Plus |
2R | 25286936 | 2R | 8459103..8459264 | 293..454 | 300 | 79 | Plus |
2R | 25286936 | 2R | 8450653..8450711 | 1236..1178 | 205 | 89.8 | Minus |
2R | 25286936 | 2R | 8464226..8464305 | 1160..1239 | 205 | 83.8 | Plus |
2R | 25286936 | 2R | 8473222..8473295 | 1160..1233 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:40 has no hits.
BO13587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:09 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-RA | 1..1725 | 17..1742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:16 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-RA | 26..1757 | 10..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:52 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 42..1758 | 22..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:51 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-RA | 35..1751 | 22..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:55 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 42..1758 | 22..1740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:55 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8455944..8456009 | 1675..1740 | 96 | <- | Minus |
2R | 8456072..8456215 | 1531..1674 | 100 | <- | Minus |
2R | 8456281..8457646 | 165..1530 | 100 | <- | Minus |
2R | 8457709..8457851 | 22..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:52 Download gff for
BO13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4345214..4345356 | 22..164 | 100 | | Minus |
arm_2R | 4343449..4343514 | 1675..1740 | 96 | <- | Minus |
arm_2R | 4343577..4343720 | 1531..1674 | 100 | <- | Minus |
arm_2R | 4343786..4345151 | 165..1530 | 100 | <- | Minus |
BO13587.pep Sequence
Translation from 16 to 1756
> BO13587.pep
MFKLLVLSCLLALALPSLAEVGWWKTGQFYQIYPRSFKDSDGDGVGDLIG
ITQQLPYLKEIGITATWLSPIFTSPMADFGYDVADLKGIDPIFGTMEDFE
ALLARAKELDIKIILDFVPNHTSDECDWFIRSAAGEEEYKDFYVWHTGKV
VNGIRQPPTNWVSVFRGSMWTWNEQRQAYYLHQFHAKQPDLNYRNPKVVE
AMKDVLRFWLRKGAYGFRIDAVPHVYEIPADADGNWPDEPRNEAVSDPED
YTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEAYSPLEV
LMQYYGNGTHLGSQIPFNFELLAKISYSSDAYHYSELIHNWLDNMPEGQV
ANWVFGNHDQSRIGSRLGADRIDACNMIILGLPGVSVTYQGEEMGMTDVW
ISWEDTVDPQACQSNEQEFERLTRDPVRTPFQWSDEVNAGFSNASVTWLP
VASNYKLVNVKKERGIALSHLNVYKQLRALRDEPTLKQGDVSVTAIGPNV
LAFKRSLAGYKSYITLININDDVESINLDSVFTSITTQLQYVVVNDKSVR
RKNDLTFANSVLLLPKEAVVLSTVASFLDH
BO13587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-PA | 574 | CG8695-PA | 1..574 | 1..574 | 3048 | 100 | Plus |
Mal-A4-PA | 579 | CG8693-PA | 7..578 | 7..576 | 1924 | 59.6 | Plus |
Mal-A5-PA | 630 | CG30359-PA | 40..602 | 19..580 | 1881 | 61.5 | Plus |
Mal-A5-PC | 611 | CG30359-PC | 40..583 | 19..580 | 1794 | 59.3 | Plus |
Mal-A5-PB | 534 | CG30359-PB | 1..506 | 76..580 | 1620 | 59.3 | Plus |