Clone Sequence Records
BO13588.3prime Sequence
710 bp (709 high quality bases) assembled on 2006-05-08
> BO13588.3prime
ATGGTCTAGAAAGCTTGCGGAGCGAAGATCCGTGAGAGGGACGTACATTA
CGCCCATGAGACGTGTCATCTCCACCTTCCCATTGGCGTCCTTGTCGTAC
TGTTGCATGTACTGAGACCCGCCGTCGGGACCGACTGGAACTATCAGGCG
TCCGCCGCTGGCCAGTTGGTTGATGAGTTCGGTGGGTGTGTCGGGAGCAG
CTGCTCCTACATGGATTGCATTATACGGGGCGTTCGGGGGGTATCCCTTG
CGGCCGTCACCCTCGACGATCAGCAACTGGCCGGAGTCCAGCATGCTACG
GTCGTCGGTGTTTAAGTTGGCCTTGCTCCGCCGCACCAGCTCTGCCTGGT
GCTCTATGCCCACGATTCGGGTGTCCGCATCAACGCCCTTAGCCTTGATG
TAACGATAGAAGCAGGCTGTGAGGTAGCCAGATCCAGAGCCCACATCCAG
TATACGTGCACCGGGCTTCAAGTGGTCGCGTAGATACTCCAAGGCGAAGG
CATGCATGTGAGGAGCACTGATGGTGACACCTCCTCCAATGGGTTGCGGG
GCGTCCATGTAGGGGTTGCGCGGAGAGTAGTGCTTGCGGTCGGTTTCCTT
CATCGCCTGGGCCACCGCATCACTTGCAATGACGCCGTGATCCTTCAGTT
GGCGAATCAGGTCTTCATTATTGGCTCCCACGGATCGCCACGCCATGTCG
ACTGATAACT
BO13588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2152-PA | 681 | Pcmt-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 953 | CG2152-RA | 133..811 | 697..19 | 3395 | 100 | Minus |
Pcmt-RC | 998 | CG2152-RC | 133..730 | 697..100 | 2990 | 100 | Minus |
Pcmt-RC | 998 | CG2152-RC | 776..856 | 99..19 | 405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5553271..5553676 | 100..505 | 2030 | 100 | Plus |
3R | 32079331 | 3R | 5553931..5554068 | 505..642 | 690 | 100 | Plus |
3R | 32079331 | 3R | 5552965..5553049 | 19..103 | 425 | 100 | Plus |
3R | 32079331 | 3R | 5554129..5554184 | 642..697 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:26:20 has no hits.
BO13588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:30 Download gff for
BO13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2152-PA | 1..681 | 16..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:50 Download gff for
BO13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2152-PA | 1..681 | 16..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:01 Download gff for
BO13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..816 | 12..705 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:16 Download gff for
BO13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..816 | 12..705 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:16 Download gff for
BO13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5553931..5554067 | 505..641 | 100 | <- | Plus |
3R | 5554129..5554188 | 642..705 | 93 | | Plus |
3R | 5552960..5553045 | 12..99 | 95 | <- | Plus |
3R | 5553271..5553675 | 100..504 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:01 Download gff for
BO13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1378682..1378767 | 12..99 | 95 | <- | Plus |
arm_3R | 1378993..1379397 | 100..504 | 100 | <- | Plus |
arm_3R | 1379653..1379789 | 505..641 | 100 | <- | Plus |
arm_3R | 1379851..1379910 | 642..705 | 93 | | Plus |
BO13588.5prime Sequence
710 bp (709 high quality bases) assembled on 2006-05-08
> BO13588.5prime
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCGCAAGC
TTTCTAGACC
BO13588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2152-PA | 681 | Pcmt-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 953 | CG2152-RA | 133..811 | 16..694 | 3395 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 133..730 | 16..613 | 2990 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 776..856 | 614..694 | 405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5553271..5553676 | 613..208 | 2030 | 100 | Minus |
3R | 32079331 | 3R | 5553931..5554068 | 208..71 | 690 | 100 | Minus |
3R | 32079331 | 3R | 5552965..5553049 | 694..610 | 425 | 100 | Minus |
3R | 32079331 | 3R | 5554129..5554184 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:42:04 has no hits.
BO13588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:31 Download gff for
BO13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2152-PA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:52 Download gff for
BO13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2152-PA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:50 Download gff for
BO13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..816 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:17:00 Download gff for
BO13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..816 | 8..701 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:17:00 Download gff for
BO13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5553931..5554067 | 72..208 | 100 | <- | Minus |
3R | 5554129..5554188 | 8..71 | 93 | | Minus |
3R | 5552960..5553045 | 614..701 | 95 | <- | Minus |
3R | 5553271..5553675 | 209..613 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:50 Download gff for
BO13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1379851..1379910 | 8..71 | 93 | | Minus |
arm_3R | 1378682..1378767 | 614..701 | 95 | <- | Minus |
arm_3R | 1378993..1379397 | 209..613 | 100 | <- | Minus |
arm_3R | 1379653..1379789 | 72..208 | 100 | <- | Minus |
BO13588.complete Sequence
712 bp assembled on 2006-10-11
GenBank Submission: FJ632846
> BO13588.complete
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCGCAAGC
TTTCTAGACCAT
BO13588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 681 | CG2152-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Pcmt-RC | 612 | CG2152-PC | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 953 | CG2152-RA | 133..811 | 16..694 | 3395 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 133..730 | 16..613 | 2990 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 776..856 | 614..694 | 405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5553271..5553676 | 613..208 | 2030 | 100 | Minus |
3R | 32079331 | 3R | 5553931..5554068 | 208..71 | 690 | 100 | Minus |
3R | 32079331 | 3R | 5552965..5553049 | 694..610 | 425 | 100 | Minus |
3R | 32079331 | 3R | 5554129..5554184 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:41:11 has no hits.
BO13588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:50 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:53 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 124..811 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:24 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 134..811 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:50 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 124..811 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:07 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 134..811 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:07 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5552961..5553045 | 614..696 | 97 | <- | Minus |
3R | 5553271..5553675 | 209..613 | 100 | <- | Minus |
3R | 5553931..5554067 | 72..208 | 100 | <- | Minus |
3R | 5554129..5554183 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:24 Download gff for
BO13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1378683..1378767 | 614..696 | 97 | <- | Minus |
arm_3R | 1378993..1379397 | 209..613 | 100 | <- | Minus |
arm_3R | 1379653..1379789 | 72..208 | 100 | <- | Minus |
arm_3R | 1379851..1379905 | 17..71 | 100 | | Minus |
BO13588.pep Sequence
Translation from 16 to 712
> BO13588.pep
MAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAP
QPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYI
KAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK
GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQY
DKDANGKVEMTRLMGVMYVPLTDLRSASFLDH
BO13588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-PA | 226 | CG2152-PA | 1..226 | 1..226 | 1183 | 100 | Plus |
Pcmt-PC | 203 | CG2152-PC | 1..199 | 1..199 | 1044 | 100 | Plus |