Clone BO13588 Report

Search the DGRC for BO13588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptPcmt-RA
Protein status:BO13588.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO13588.3prime Sequence

710 bp (709 high quality bases) assembled on 2006-05-08

> BO13588.3prime
ATGGTCTAGAAAGCTTGCGGAGCGAAGATCCGTGAGAGGGACGTACATTA
CGCCCATGAGACGTGTCATCTCCACCTTCCCATTGGCGTCCTTGTCGTAC
TGTTGCATGTACTGAGACCCGCCGTCGGGACCGACTGGAACTATCAGGCG
TCCGCCGCTGGCCAGTTGGTTGATGAGTTCGGTGGGTGTGTCGGGAGCAG
CTGCTCCTACATGGATTGCATTATACGGGGCGTTCGGGGGGTATCCCTTG
CGGCCGTCACCCTCGACGATCAGCAACTGGCCGGAGTCCAGCATGCTACG
GTCGTCGGTGTTTAAGTTGGCCTTGCTCCGCCGCACCAGCTCTGCCTGGT
GCTCTATGCCCACGATTCGGGTGTCCGCATCAACGCCCTTAGCCTTGATG
TAACGATAGAAGCAGGCTGTGAGGTAGCCAGATCCAGAGCCCACATCCAG
TATACGTGCACCGGGCTTCAAGTGGTCGCGTAGATACTCCAAGGCGAAGG
CATGCATGTGAGGAGCACTGATGGTGACACCTCCTCCAATGGGTTGCGGG
GCGTCCATGTAGGGGTTGCGCGGAGAGTAGTGCTTGCGGTCGGTTTCCTT
CATCGCCTGGGCCACCGCATCACTTGCAATGACGCCGTGATCCTTCAGTT
GGCGAATCAGGTCTTCATTATTGGCTCCCACGGATCGCCACGCCATGTCG
ACTGATAACT

BO13588.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2152-PA 681 Pcmt-RA 1..678 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 953 CG2152-RA 133..811 697..19 3395 100 Minus
Pcmt-RC 998 CG2152-RC 133..730 697..100 2990 100 Minus
Pcmt-RC 998 CG2152-RC 776..856 99..19 405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5553271..5553676 100..505 2030 100 Plus
3R 32079331 3R 5553931..5554068 505..642 690 100 Plus
3R 32079331 3R 5552965..5553049 19..103 425 100 Plus
3R 32079331 3R 5554129..5554184 642..697 280 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:26:20 has no hits.

BO13588.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:30 Download gff for BO13588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2152-PA 1..681 16..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:50 Download gff for BO13588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2152-PA 1..681 16..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:01 Download gff for BO13588.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..816 12..705 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:16 Download gff for BO13588.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..816 12..705 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:16 Download gff for BO13588.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5553931..5554067 505..641 100 <- Plus
3R 5554129..5554188 642..705 93   Plus
3R 5552960..5553045 12..99 95 <- Plus
3R 5553271..5553675 100..504 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:01 Download gff for BO13588.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1378682..1378767 12..99 95 <- Plus
arm_3R 1378993..1379397 100..504 100 <- Plus
arm_3R 1379653..1379789 505..641 100 <- Plus
arm_3R 1379851..1379910 642..705 93   Plus

BO13588.5prime Sequence

710 bp (709 high quality bases) assembled on 2006-05-08

> BO13588.5prime
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCGCAAGC
TTTCTAGACC

BO13588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2152-PA 681 Pcmt-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 953 CG2152-RA 133..811 16..694 3395 100 Plus
Pcmt-RC 998 CG2152-RC 133..730 16..613 2990 100 Plus
Pcmt-RC 998 CG2152-RC 776..856 614..694 405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5553271..5553676 613..208 2030 100 Minus
3R 32079331 3R 5553931..5554068 208..71 690 100 Minus
3R 32079331 3R 5552965..5553049 694..610 425 100 Minus
3R 32079331 3R 5554129..5554184 71..16 280 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:42:04 has no hits.

BO13588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:31 Download gff for BO13588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2152-PA 1..681 17..697 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:52 Download gff for BO13588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2152-PA 1..681 17..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:50 Download gff for BO13588.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..816 8..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:17:00 Download gff for BO13588.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..816 8..701 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:17:00 Download gff for BO13588.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5553931..5554067 72..208 100 <- Minus
3R 5554129..5554188 8..71 93   Minus
3R 5552960..5553045 614..701 95 <- Minus
3R 5553271..5553675 209..613 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:50 Download gff for BO13588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1379851..1379910 8..71 93   Minus
arm_3R 1378682..1378767 614..701 95 <- Minus
arm_3R 1378993..1379397 209..613 100 <- Minus
arm_3R 1379653..1379789 72..208 100 <- Minus

BO13588.complete Sequence

712 bp assembled on 2006-10-11

GenBank Submission: FJ632846

> BO13588.complete
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCGCAAGC
TTTCTAGACCAT

BO13588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 681 CG2152-PA 1..678 17..694 3390 100 Plus
Pcmt-RC 612 CG2152-PC 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 953 CG2152-RA 133..811 16..694 3395 100 Plus
Pcmt-RC 998 CG2152-RC 133..730 16..613 2990 100 Plus
Pcmt-RC 998 CG2152-RC 776..856 614..694 405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5553271..5553676 613..208 2030 100 Minus
3R 32079331 3R 5553931..5554068 208..71 690 100 Minus
3R 32079331 3R 5552965..5553049 694..610 425 100 Minus
3R 32079331 3R 5554129..5554184 71..16 280 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:41:11 has no hits.

BO13588.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:50 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 1..681 17..697 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:53 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 124..811 8..701 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:24 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 134..811 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:50 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 124..811 8..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:07 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 134..811 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:07 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5552961..5553045 614..696 97 <- Minus
3R 5553271..5553675 209..613 100 <- Minus
3R 5553931..5554067 72..208 100 <- Minus
3R 5554129..5554183 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:24 Download gff for BO13588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1378683..1378767 614..696 97 <- Minus
arm_3R 1378993..1379397 209..613 100 <- Minus
arm_3R 1379653..1379789 72..208 100 <- Minus
arm_3R 1379851..1379905 17..71 100   Minus

BO13588.pep Sequence

Translation from 16 to 712

> BO13588.pep
MAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAP
QPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYI
KAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK
GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQY
DKDANGKVEMTRLMGVMYVPLTDLRSASFLDH

BO13588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-PA 226 CG2152-PA 1..226 1..226 1183 100 Plus
Pcmt-PC 203 CG2152-PC 1..199 1..199 1044 100 Plus