Clone Sequence Records
BO13589.complete Sequence
985 bp assembled on 2009-12-08
GenBank Submission: KX799621
> BO13589.complete
GAAGTTATCAGTCGACATGGTTAGGGAGAACAAGGCAGCGTGGAAGGCTC
AGTACTTCATCAAGGTTGTGGAACTGTTCGATGAGTTCCCAAAGTGCTTC
ATCGTGGGCGCCGACAACGTGGGCTCCAAGCAGATGCAGAACATCCGTAC
CAGCCTGCGTGGACTGGCCGTCGTGCTTATGGGCAAGAACACCATGATGC
GCAAGGCCATCCGCGGTCATCTGGAGAACAACCCGCAGCTGGAGAAGCTG
CTACCCCACATCAAGGGCAACGTGGGATTCGTGTTCACCAAGGGCGATCT
CGCCGAGGTGCGCGACAAGCTGCTGGAGTCCAAGGTGCGCGCCCCCGCCC
GTCCCGGCGCTATTGCCCCTCTGCACGTCATCATCCCGGCGCAGAACACC
GGCTTGGGACCCGAGAAGACCAGTTTCTTCCAGGCCCTGTCCATCCCGAC
CAAAATTTCCAAGGGAACAATTGAAATCATCAACGATGTGCCCATCCTGA
AGCCTGGCGACAAGGTCGGCGCCTCCGAGGCGACACTGCTCAACATGTTG
AACATCTCGCCCTTCTCGTACGGTCTGATTGTCAACCAGGTCTACGACTC
CGGCTCGATCTTTTCGCCGGAGATCCTGGACATCAAGCCCGAGGATCTGC
GCGCCAAGTTCCAACAGGGAGTGGCCAACTTGGCCGCCGTTTGTTTGTCC
GTGGGCTACCCCACCATCGCCTCGGCCCCGCACAGCATTGCCAACGGATT
CAAGAATCTGCTGGCCATTGCTGCCACCACCGAGGTGGAGTTCAAGGAGG
CGACCACCATCAAGGAGTACATCAAGGACCCCAGCAAGTTCGCCGCAGCT
GCTTCGGCTTCGGCTGCCCCCGCGGCCGGCGGAGCTACCGAGAAGAAGGA
GGAGGCCAAGAAGCCCGAGTCCGAATCAGAGGAGGAGGACGATGATATGG
GTTTCGGTCTGTTCGACGCAAGCTTTCTAGACCAT
BO13589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-RB | 954 | CG7490-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
| RpLP0-RA | 954 | CG7490-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-RB | 1328 | CG7490-RB | 203..1153 | 17..967 | 4755 | 100 | Plus |
| RpLP0-RA | 1211 | CG7490-RA | 86..1036 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22076415..22077312 | 70..967 | 4490 | 100 | Plus |
| 3L | 28110227 | 3L | 22076288..22076342 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:30 has no hits.
BO13589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 17:52:03 Download gff for
BO13589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 136..1086 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:45 Download gff for
BO13589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 86..1036 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:59 Download gff for
BO13589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 86..1036 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:59 Download gff for
BO13589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22076288..22076341 | 17..70 | 100 | -> | Plus |
| 3L | 22076416..22077312 | 71..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:45 Download gff for
BO13589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22069388..22069441 | 17..70 | 100 | -> | Plus |
| arm_3L | 22069516..22070412 | 71..969 | 99 | | Plus |
BO13589.3prime Sequence
904 bp (801 high quality bases) assembled on 2006-05-08
> BO13589.3prime
ATGGTCTAGAAAGCTTGCGTCGAACAGACCGAAACCCATATCATCGTCCT
CCTCCTCTGATTCGGACTCGGGCTTCTTGGCCTCCTCCTTCTTCTCGGTA
GCTCCGCCGGCCGCGGGGGCAGCCGAAGCCGAAGCAGCTGCGGCGAACTT
GCTGGGGTCCTTGATGTACTCCTTGATGGTGGTCGCCTCCTTGAACTCCA
CCTCGGTGGTGGCAGCAATGGCCAGCAGATTCTTGAATCCGTTGGCAATG
CTGTGCGGGGCCGAGGCGATGGTGGGGTAGCCCACGGACAAACAAACGGC
GGCCAAGTTGGCCACTCCCTGTTGGAACTTGGCGCGCAGATCCTCGGGCT
TGATGTCCAGGATCTCCGGCGAAAAGATCGAGCCGGAGTCGTAGACCTGG
TTGACAATCAGACCGTACGAGAAGGGCGAGATGTTCAACATGTTGAGCAG
TGTCGCCTCGGAGGCGCCGACCTTGTCGCCAGGCTTCAGGATGGGCACAT
CGTTGATGATTTCAATTGTTCCCTTGGAAATTTTGGTCGGGATGGACAGG
GCCTGGAAGAAACTGGTCTTCTCGGGTCCCAAGCCGGTGTTCTGCGCCGG
GATGATGACGTGCAGAGGGGCAATAGCGCCGGGACGGGCGGGGGCGCGCA
CCTTGGACTCCAGCAGCTTGTCGCGCACCTCGGCGAGATCGCCCTTGGTG
AACACGAATCCCACGTTGCCCTTGATGTGGGGTAGCAGCTTCTCCAGCTG
CGGGTTGTTCTCCAGATGACCGCGGATGGCCTTGCGCATCATGGTGTTCT
TGCCCATAAGCACGACGGCCAGTCCACGCAGGCTGGTACGGATGTTCTGC
ATCTGCTTGGAGCCCACGTTGTCGGCGCCCCCAATGAAGCACTTTGGGAA
CTCA
BO13589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7490-PA | 954 | RpLP0-RA | 66..951 | 904..19 | 4380 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-RB | 1328 | CG7490-RB | 268..1153 | 904..19 | 4400 | 99.8 | Minus |
| RpLP0-RA | 1211 | CG7490-RA | 151..1036 | 904..19 | 4400 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22076427..22077312 | 904..19 | 4400 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:45:52 has no hits.
BO13589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:32 Download gff for
BO13589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-PA | 67..954 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:53 Download gff for
BO13589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7490-PA | 67..954 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:08 Download gff for
BO13589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 152..1042 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:07 Download gff for
BO13589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 152..1042 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:07 Download gff for
BO13589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22076428..22077318 | 12..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:08 Download gff for
BO13589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22069528..22070418 | 12..903 | 99 | | Minus |
BO13589.pep Sequence
Translation from 16 to 985
> BO13589.pep
MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGL
AVVLMGKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRD
KLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKG
TIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFS
PEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLA
IAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKP
ESESEEEDDDMGFGLFDASFLDH
BO13589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-PB | 317 | CG7490-PB | 1..317 | 1..317 | 1600 | 100 | Plus |
| RpLP0-PA | 317 | CG7490-PA | 1..317 | 1..317 | 1600 | 100 | Plus |
