Clone BO13591 Report

Search the DGRC for BO13591

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptUbcD2-RA
Protein status:BO13591.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO13591.3prime Sequence

729 bp (678 high quality bases) assembled on 2006-05-08

> BO13591.3prime
ATGGTCTAGAAAGCTTGCTGTTGCGTACCTTTTTGTCCAGAGACGCGCAA
TTCGATCGTGCTCCTCACGATTCTGCAAATATTGCGTGGCAATGCTGCCC
ACCAGCGGATCGGCTGGATTACAGTCTGTGAGCAGGGAGCAAATTGACAG
CAAGACCTTTGATATGGTCAGCGCCGGCGACCAGTTGTCCTTGAGTATGT
CCAGGCAAATGACGCCCTGGCTGTTGATGTTGCAGTGATAGATGCGCGTG
CGGAACGTGACTTTGGGTGGCTTGAAGGGATACTCCGGCGAGAAGTGTAT
GTCGAGGAAGAAGACGCCGCCCTCGTAGACGGATCCGGGTGGTCCCAGTA
TGGTGGATACCCACTCGTACAGGTTGTCGCCCTTGGGCCCGGCACTGCAG
TTGGGCGGTGGATCCAGTGTGATCTCAGCCAGCTCCTTCTGTATGCGCTT
GGCCGAGGTGCCCAGCGCCCTGGATATCCTGGGCGTTGTTTTGGCTTCCT
TTCGCGGCTCATCTCCGCCACCGGCATTGCTCCCGGAGGCACCACCGTTG
GCGTTGCTGCCCCTGCCGCCACGTGCCTGCGGAGTTCCGGCAGTCGTCGG
CTGGCTGGTATTGCTCACGTTGCTGGCCGTTGTGCTGGGTGCACTGGGCG
CATTTGAGGTGGCACTGGAGGTGGCCACCTCGGCGGCACTGCCCGCTGGC
TGGGGGTGAAGACATGTCGACTGATAACT

BO13591.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6720-PA 699 UbcD2-RA 17..696 698..19 3375 99.8 Minus
CG6720-PB 699 UbcD2-RB 17..696 698..19 3375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 1625 CG6720-RD 372..1067 715..19 3430 99.6 Minus
Ubc2-RC 2111 CG6720-RC 305..1000 715..19 3430 99.6 Minus
Ubc2-RB 1349 CG6720-RB 96..791 715..19 3430 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10766391..10766991 114..715 2930 99.5 Plus
2L 23513712 2L 1334347..1334718 441..70 495 75.5 Minus
2L 23513712 2L 10766189..10766278 27..116 450 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:19:13 has no hits.

BO13591.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:35 Download gff for BO13591.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD2-PA 1..699 16..715 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:58 Download gff for BO13591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6720-PB 1..699 16..715 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:24 Download gff for BO13591.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RA 305..1006 13..715 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:41 Download gff for BO13591.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc2-RB 96..797 13..715 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:41 Download gff for BO13591.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10766189..10766275 27..113 100 <- Plus
2L 10766391..10766991 114..715 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:24 Download gff for BO13591.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10766189..10766275 27..113 100 <- Plus
arm_2L 10766391..10766991 114..715 99   Plus

BO13591.5prime Sequence

728 bp (727 high quality bases) assembled on 2006-05-08

> BO13591.5prime
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
AGGTACGCAACAGCAAGCTTTCTAGACC

BO13591.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6720-PA 699 UbcD2-RA 1..696 17..712 3455 99.8 Plus
CG6720-PB 699 UbcD2-RB 1..696 17..712 3455 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 1625 CG6720-RD 372..1067 17..712 3465 99.9 Plus
Ubc2-RC 2111 CG6720-RC 305..1000 17..712 3465 99.9 Plus
Ubc2-RB 1349 CG6720-RB 96..791 17..712 3465 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10766391..10766991 617..17 2990 99.8 Minus
2L 23513712 2L 1334347..1334718 290..661 495 75.5 Plus
2L 23513712 2L 10766189..10766278 704..615 450 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:47:31 has no hits.

BO13591.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:36 Download gff for BO13591.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD2-PA 1..699 17..715 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:59 Download gff for BO13591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6720-PB 1..699 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:16 Download gff for BO13591.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RA 305..1006 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:23 Download gff for BO13591.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc2-RB 96..797 17..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:23 Download gff for BO13591.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10766189..10766275 618..704 100 <- Minus
2L 10766391..10766991 17..617 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:16 Download gff for BO13591.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10766189..10766275 618..704 100 <- Minus
arm_2L 10766391..10766991 17..617 99   Minus

BO13591.complete Sequence

730 bp assembled on 2006-10-11

GenBank Submission: FJ632847

> BO13591.complete
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
AGGTACGCAACAGCAAGCTTTCTAGACCAT

BO13591.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 699 CG6720-PD 1..696 17..712 3465 99.9 Plus
Ubc2-RC 699 CG6720-PC 1..696 17..712 3465 99.9 Plus
Ubc2-RB 699 CG6720-PB 1..696 17..712 3465 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 1625 CG6720-RD 372..1067 17..712 3465 99.9 Plus
Ubc2-RC 2111 CG6720-RC 305..1000 17..712 3465 99.9 Plus
Ubc2-RB 1349 CG6720-RB 96..791 17..712 3465 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10766391..10766991 617..17 2990 99.8 Minus
2L 23513712 2L 1334347..1334718 290..661 495 75.5 Plus
2L 23513712 2L 10766189..10766278 704..615 450 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:25:12 has no hits.

BO13591.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:14 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RB 1..699 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:24 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RB 96..797 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:13 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RA 305..1000 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:14 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RB 96..797 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:32 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc2-RB 96..791 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:32 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10766189..10766275 618..704 100 <- Minus
2L 10766391..10766991 17..617 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:13 Download gff for BO13591.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10766189..10766275 618..704 100 <- Minus
arm_2L 10766391..10766991 17..617 99   Minus

BO13591.pep Sequence

Translation from 16 to 730

> BO13591.pep
MSSTPAAGSAAEVATSSATSNAPSAPSTTASNVSNTSQPTTAGTPQARGG
RGSNANGGASGSNAGGGDEPRKEAKTTPRISRALGTSAKRIQKELAEITL
DPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPP
KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP
ADPLVGSIATQYLQNREEHDRIARLWTKRYATASFLDH

BO13591.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-PD 232 CG6720-PD 1..232 1..232 1218 100 Plus
Ubc2-PC 232 CG6720-PC 1..232 1..232 1218 100 Plus
Ubc2-PB 232 CG6720-PB 1..232 1..232 1218 100 Plus
Ubc2-PA 232 CG6720-PA 1..232 1..232 1218 100 Plus
CG5440-PC 169 CG5440-PC 11..166 77..231 583 71.8 Plus