Clone Sequence Records
BO13591.3prime Sequence
729 bp (678 high quality bases) assembled on 2006-05-08
> BO13591.3prime
ATGGTCTAGAAAGCTTGCTGTTGCGTACCTTTTTGTCCAGAGACGCGCAA
TTCGATCGTGCTCCTCACGATTCTGCAAATATTGCGTGGCAATGCTGCCC
ACCAGCGGATCGGCTGGATTACAGTCTGTGAGCAGGGAGCAAATTGACAG
CAAGACCTTTGATATGGTCAGCGCCGGCGACCAGTTGTCCTTGAGTATGT
CCAGGCAAATGACGCCCTGGCTGTTGATGTTGCAGTGATAGATGCGCGTG
CGGAACGTGACTTTGGGTGGCTTGAAGGGATACTCCGGCGAGAAGTGTAT
GTCGAGGAAGAAGACGCCGCCCTCGTAGACGGATCCGGGTGGTCCCAGTA
TGGTGGATACCCACTCGTACAGGTTGTCGCCCTTGGGCCCGGCACTGCAG
TTGGGCGGTGGATCCAGTGTGATCTCAGCCAGCTCCTTCTGTATGCGCTT
GGCCGAGGTGCCCAGCGCCCTGGATATCCTGGGCGTTGTTTTGGCTTCCT
TTCGCGGCTCATCTCCGCCACCGGCATTGCTCCCGGAGGCACCACCGTTG
GCGTTGCTGCCCCTGCCGCCACGTGCCTGCGGAGTTCCGGCAGTCGTCGG
CTGGCTGGTATTGCTCACGTTGCTGGCCGTTGTGCTGGGTGCACTGGGCG
CATTTGAGGTGGCACTGGAGGTGGCCACCTCGGCGGCACTGCCCGCTGGC
TGGGGGTGAAGACATGTCGACTGATAACT
BO13591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6720-PA | 699 | UbcD2-RA | 17..696 | 698..19 | 3375 | 99.8 | Minus |
CG6720-PB | 699 | UbcD2-RB | 17..696 | 698..19 | 3375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 715..19 | 3430 | 99.6 | Minus |
Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 715..19 | 3430 | 99.6 | Minus |
Ubc2-RB | 1349 | CG6720-RB | 96..791 | 715..19 | 3430 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10766391..10766991 | 114..715 | 2930 | 99.5 | Plus |
2L | 23513712 | 2L | 1334347..1334718 | 441..70 | 495 | 75.5 | Minus |
2L | 23513712 | 2L | 10766189..10766278 | 27..116 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:19:13 has no hits.
BO13591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:35 Download gff for
BO13591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-PA | 1..699 | 16..715 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:58 Download gff for
BO13591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6720-PB | 1..699 | 16..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:24 Download gff for
BO13591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RA | 305..1006 | 13..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:41 Download gff for
BO13591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc2-RB | 96..797 | 13..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:41 Download gff for
BO13591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10766189..10766275 | 27..113 | 100 | <- | Plus |
2L | 10766391..10766991 | 114..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:24 Download gff for
BO13591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10766189..10766275 | 27..113 | 100 | <- | Plus |
arm_2L | 10766391..10766991 | 114..715 | 99 | | Plus |
BO13591.5prime Sequence
728 bp (727 high quality bases) assembled on 2006-05-08
> BO13591.5prime
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
AGGTACGCAACAGCAAGCTTTCTAGACC
BO13591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6720-PA | 699 | UbcD2-RA | 1..696 | 17..712 | 3455 | 99.8 | Plus |
CG6720-PB | 699 | UbcD2-RB | 1..696 | 17..712 | 3455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 17..712 | 3465 | 99.9 | Plus |
Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 17..712 | 3465 | 99.9 | Plus |
Ubc2-RB | 1349 | CG6720-RB | 96..791 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10766391..10766991 | 617..17 | 2990 | 99.8 | Minus |
2L | 23513712 | 2L | 1334347..1334718 | 290..661 | 495 | 75.5 | Plus |
2L | 23513712 | 2L | 10766189..10766278 | 704..615 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:47:31 has no hits.
BO13591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:36 Download gff for
BO13591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-PA | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:59 Download gff for
BO13591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6720-PB | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:16 Download gff for
BO13591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RA | 305..1006 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:23 Download gff for
BO13591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc2-RB | 96..797 | 17..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:23 Download gff for
BO13591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10766189..10766275 | 618..704 | 100 | <- | Minus |
2L | 10766391..10766991 | 17..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:16 Download gff for
BO13591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10766189..10766275 | 618..704 | 100 | <- | Minus |
arm_2L | 10766391..10766991 | 17..617 | 99 | | Minus |
BO13591.complete Sequence
730 bp assembled on 2006-10-11
GenBank Submission: FJ632847
> BO13591.complete
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
AGGTACGCAACAGCAAGCTTTCTAGACCAT
BO13591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 699 | CG6720-PD | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Ubc2-RC | 699 | CG6720-PC | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Ubc2-RB | 699 | CG6720-PB | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 17..712 | 3465 | 99.9 | Plus |
Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 17..712 | 3465 | 99.9 | Plus |
Ubc2-RB | 1349 | CG6720-RB | 96..791 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10766391..10766991 | 617..17 | 2990 | 99.8 | Minus |
2L | 23513712 | 2L | 1334347..1334718 | 290..661 | 495 | 75.5 | Plus |
2L | 23513712 | 2L | 10766189..10766278 | 704..615 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:12 has no hits.
BO13591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:14 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RB | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:24 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RB | 96..797 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:13 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RA | 305..1000 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:14 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RB | 96..797 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:32 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc2-RB | 96..791 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:32 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10766189..10766275 | 618..704 | 100 | <- | Minus |
2L | 10766391..10766991 | 17..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:13 Download gff for
BO13591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10766189..10766275 | 618..704 | 100 | <- | Minus |
arm_2L | 10766391..10766991 | 17..617 | 99 | | Minus |
BO13591.pep Sequence
Translation from 16 to 730
> BO13591.pep
MSSTPAAGSAAEVATSSATSNAPSAPSTTASNVSNTSQPTTAGTPQARGG
RGSNANGGASGSNAGGGDEPRKEAKTTPRISRALGTSAKRIQKELAEITL
DPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPP
KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP
ADPLVGSIATQYLQNREEHDRIARLWTKRYATASFLDH
BO13591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-PD | 232 | CG6720-PD | 1..232 | 1..232 | 1218 | 100 | Plus |
Ubc2-PC | 232 | CG6720-PC | 1..232 | 1..232 | 1218 | 100 | Plus |
Ubc2-PB | 232 | CG6720-PB | 1..232 | 1..232 | 1218 | 100 | Plus |
Ubc2-PA | 232 | CG6720-PA | 1..232 | 1..232 | 1218 | 100 | Plus |
CG5440-PC | 169 | CG5440-PC | 11..166 | 77..231 | 583 | 71.8 | Plus |