Clone Sequence Records
BO13592.3prime Sequence
844 bp (739 high quality bases) assembled on 2006-05-08
> BO13592.3prime
ATGGTCTAGAAAGCTTGCGTGAGCCGAAACAGACACCTGCCAGACGCGGA
TGGTGTTGTCGGAGTAGCCGGCGAACAGAGTCTGGCCGTCGGTGGACCAG
GCCAGGGACAGGCACTGGGGCTGATCGGCCTTCGACGTGGGCGAAACGAC
CTCGGGGCGCAGCTCCTCAACGGTCTTCTTGCATGCCAGATCCCAGATCT
TGATCGAGGGTCCGTAGGCCACGCACAGCCAGTAGCGGTTGGGCGAGAAG
CACAGGGCGTTGATGATGTCGTTGTGCTCCAGAGTGTACAGGTTCTTGCC
GTCATTGAGGTCCCACAGCAGGGCCTTGGAGTCCTTGCCACCTGAGGTGC
ACAGGGAGCCATCGGGCGAGACGGTCACCGTGTTCAGGTAGCCGTTGTGG
CCGTGGTGGTTGTTCTTCAACTTGCAGTTAGCCAAGTTCCAGACCTTGAC
GGTGCGATCCCAGCCGCAGGACACGATGATCGGGTTGGAGTGGTTGGGCG
AGAAGCGCACGCACGACACCCAGTCGGTGTGGCCATCCTCCTGGATGGTG
AACTTGCACTCAGCCAGGGTGTTCCACAGCTTGATGGTCTTGTCCCGAGA
GCCGGACACGATCTGACGGTTATCGGCCGAGAAGGCAACCGACAAAACGT
CCTTAGTGTGTCCCTCGAAGCGACGGGTGGTCTTGCCGGCGGCCAAATCC
CACAGGCGAAGGGTCTGATCCCAGGATCCGGACAGGGCGTAGTTGCCATC
GGAGGAGAGCACCACGTCGCTGATGAAGTGCGAGTGTCCGTAGAGACGCT
TCTGGGGGTAGCCGTAGTTGGTGTCCTCGTCGCGGGTCAGCTTC
BO13592.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7111-PA | 957 | Rack1-RA | 129..954 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 206..1031 | 844..19 | 4130 | 100 | Minus |
| Rack1-RD | 1175 | CG7111-RD | 275..1100 | 844..19 | 4130 | 100 | Minus |
| Rack1-RA | 1106 | CG7111-RA | 206..1031 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825704..7826338 | 19..653 | 3175 | 100 | Plus |
| 2L | 23513712 | 2L | 7826769..7826962 | 651..844 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:43:14 has no hits.
BO13592.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:37 Download gff for
BO13592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-PA | 129..957 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:01 Download gff for
BO13592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7111-PA | 129..957 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:06 Download gff for
BO13592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 206..1044 | 3..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:00 Download gff for
BO13592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 206..1044 | 3..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:00 Download gff for
BO13592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7825691..7826336 | 3..651 | 99 | <- | Plus |
| 2L | 7826770..7826962 | 652..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:06 Download gff for
BO13592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825691..7826336 | 3..651 | 99 | <- | Plus |
| arm_2L | 7826770..7826962 | 652..844 | 100 | | Plus |
BO13592.5prime Sequence
843 bp (793 high quality bases) assembled on 2006-05-08
> BO13592.5prime
GAAGTTATCAGTCGACATGTCCGAGACCCTGCAATTGCGCGGTACCCTCA
TTGGCCACAATGGATGGGTCACCCAGATCGCCACCAACCCCAAGGATCCC
GACACCATAATTTCGGCCTCCCGTGACAAGACCCTGATCGTGTGGAAGCT
GACCCGCGACGAGGACACCAACTACGGCTACCCCCAGAAGCGTCTCTACG
GACACTCGCACTTCATCAGCGACGTGGTGCTCTCCTCCGATGGCAACTAC
GCCCTGTCCGGATCCTGGGATCAGACCCTTCGCCTGTGGGATTTGGCCGC
CGGCAAGACCACCCGTCGCTTCGAGGGACACACTAAGGACGTTTTGTCGG
TTGCCTTCTCGGCCGATAACCGTCAGATCGTGTCCGGCTCTCGGGACAAG
ACCATCAAGCTGTGGAACACCCTGGCTGAGTGCAAGTTCACCATCCAGGA
GGATGGCCACACCGACTGGGTGTCGTGCGTGCGCTTCTCGCCCAACCACT
CCAACCCGATCATCGTGTCCTGCGGCTGGGATCGCACCGTCAAGGTCTGG
AACTTGGCTAACTGCAAGTTGAAGAACAACCACCACGGCCACAACGGCTA
CCTGAACACGGTGACCGTCTCGCCCGATGGCTCCCTGTGCACCTCAGGTG
GCAAGGACTCCAAGGCCCTGCTGTGGGACCTCAATGACGGCAAGAACCTG
TACACTCTGGAGCACAACGACATCATCAACGCCCTGTGCTTCTCGCCCAA
CCGCTACTGGCTGTGCGTGGCCTACGGACCCTCGATCAAGATCTGGGATC
TGGCATGCAAGAAGACCGTTGAGGAGCTGCGCCCCGAGGTCGT
BO13592.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7111-PA | 957 | Rack1-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 78..904 | 17..843 | 4135 | 100 | Plus |
| Rack1-RD | 1175 | CG7111-RD | 147..973 | 17..843 | 4135 | 100 | Plus |
| Rack1-RA | 1106 | CG7111-RA | 78..904 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825831..7826338 | 843..336 | 2540 | 100 | Minus |
| 2L | 23513712 | 2L | 7826769..7826982 | 338..125 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 7827061..7827169 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:12:26 has no hits.
BO13592.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:38 Download gff for
BO13592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:02 Download gff for
BO13592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7111-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:46 Download gff for
BO13592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 66..904 | 6..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:46 Download gff for
BO13592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 66..904 | 6..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:46 Download gff for
BO13592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| 2L | 7827061..7827179 | 6..125 | 95 | | Minus |
| 2L | 7825831..7826336 | 338..843 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:46 Download gff for
BO13592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825831..7826336 | 338..843 | 100 | <- | Minus |
| arm_2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| arm_2L | 7827061..7827179 | 6..125 | 95 | | Minus |
BO13592.complete Sequence
988 bp assembled on 2006-10-11
GenBank Submission: FJ632848
> BO13592.complete
GAAGTTATCAGTCGACATGTCCGAGACCCTGCAATTGCGCGGTACCCTCA
TTGGCCACAATGGATGGGTCACCCAGATCGCCACCAACCCCAAGGATCCC
GACACCATAATTTCGGCCTCCCGTGACAAGACCCTGATCGTGTGGAAGCT
GACCCGCGACGAGGACACCAACTACGGCTACCCCCAGAAGCGTCTCTACG
GACACTCGCACTTCATCAGCGACGTGGTGCTCTCCTCCGATGGCAACTAC
GCCCTGTCCGGATCCTGGGATCAGACCCTTCGCCTGTGGGATTTGGCCGC
CGGCAAGACCACCCGTCGCTTCGAGGGACACACTAAGGACGTTTTGTCGG
TTGCCTTCTCGGCCGATAACCGTCAGATCGTGTCCGGCTCTCGGGACAAG
ACCATCAAGCTGTGGAACACCCTGGCTGAGTGCAAGTTCACCATCCAGGA
GGATGGCCACACCGACTGGGTGTCGTGCGTGCGCTTCTCGCCCAACCACT
CCAACCCGATCATCGTGTCCTGCGGCTGGGATCGCACCGTCAAGGTCTGG
AACTTGGCTAACTGCAAGTTGAAGAACAACCACCACGGCCACAACGGCTA
CCTGAACACGGTGACCGTCTCGCCCGATGGCTCCCTGTGCACCTCAGGTG
GCAAGGACTCCAAGGCCCTGCTGTGGGACCTCAATGACGGCAAGAACCTG
TACACTCTGGAGCACAACGACATCATCAACGCCCTGTGCTTCTCGCCCAA
CCGCTACTGGCTGTGCGTGGCCTACGGACCCTCGATCAAGATCTGGGATC
TGGCATGCAAGAAGACCGTTGAGGAGCTGCGCCCCGAGGTCGTTTCGCCC
ACGTCGAAGGCCGATCAGCCCCAGTGCCTGTCCCTGGCCTGGTCCACCGA
CGGCCAGACTCTGTTCGCCGGCTACTCCGACAACACCATCCGCGTCTGGC
AGGTGTCTGTTTCGGCTCACGCAAGCTTTCTAGACCAT
BO13592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 957 | CG7111-PC | 1..954 | 17..970 | 4770 | 100 | Plus |
| Rack1-RD | 957 | CG7111-PD | 1..954 | 17..970 | 4770 | 100 | Plus |
| Rack1-RA | 957 | CG7111-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 78..1031 | 17..970 | 4770 | 100 | Plus |
| Rack1-RD | 1175 | CG7111-RD | 147..1100 | 17..970 | 4770 | 100 | Plus |
| Rack1-RA | 1106 | CG7111-RA | 78..1031 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825704..7826338 | 970..336 | 3175 | 100 | Minus |
| 2L | 23513712 | 2L | 7826769..7826982 | 338..125 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 7827061..7827169 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:36 has no hits.
BO13592.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:15 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 1..957 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:26 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 72..1050 | 6..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:19 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 78..1031 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:15 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 72..1050 | 6..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:16 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 78..1031 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:16 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7825702..7826336 | 338..972 | 99 | <- | Minus |
| 2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| 2L | 7827061..7827169 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:19 Download gff for
BO13592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825702..7826336 | 338..972 | 99 | <- | Minus |
| arm_2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| arm_2L | 7827061..7827169 | 17..125 | 100 | | Minus |
BO13592.pep Sequence
Translation from 16 to 988
> BO13592.pep
MSETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDED
TNYGYPQKRLYGHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTR
RFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTD
WVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVT
VSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC
VAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLF
AGYSDNTIRVWQVSVSAHASFLDH
BO13592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-PC | 318 | CG7111-PC | 1..318 | 1..318 | 1735 | 100 | Plus |
| Rack1-PD | 318 | CG7111-PD | 1..318 | 1..318 | 1735 | 100 | Plus |
| Rack1-PA | 318 | CG7111-PA | 1..318 | 1..318 | 1735 | 100 | Plus |
| Rack1-PB | 109 | CG7111-PB | 1..107 | 1..107 | 574 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 68..315 | 60..313 | 317 | 30.2 | Plus |
