Clone BO13595 Report

Search the DGRC for BO13595

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG8738-RA
Protein status:BO13595.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO13595.3prime Sequence

803 bp (717 high quality bases) assembled on 2006-05-08

> BO13595.3prime
ATGGTCTAGAAAGCTTGCAAAGCCCTCTATTAATGGGAACCCGCTCTTCG
TCACCTGCTCATCGATCCAGTTCCTCAAATAGGCCACATTCGTGTAGGCC
GCAGGCACATCCTTCTCGGCACATTCGATGCCCCAGGACACGAGGCCCAC
CAGCTGGTAGCGATCCTTCTGCCCAGGCAAAGTGCAAAACAACGGGGAGC
CGCCGTCGCCCATGCAGGTGTCCTTACCCTTTACGCCGCCGGCACAAGTG
AAGCTCGGATGGAGATTGTAGCGACGCCCCAGGACAGTGTGCCGCAACAG
CCGTTGGCAGGACTCGTGGTCCACCGCCGGCAGCTCGATGCGCTTTAGCA
GGTTTTCCATGGTGCGGGACGTGCTGTACCTGAGCCCCCACCCAGTGGCC
AAGCAGCTTGCACTCCGCAACTCAGCCTCCATTTGGGGCGTCTCCGGTGG
CGGCAGGCAGATGGGCTGTATGTGCGGGGCCACCTGGAAAGGTCGCTCCA
GCACCACCAGAGCAATGTCATTGTATAGGGTCAGGTTGTTGAAGTTCTCG
TGGCGATGCAGCTCGCTGATGGCCCGCATCTGGTAGGGATGCAGCTCTGT
CTGGCTGTTAAGGTCCCAGTCACCAGCTCGAACCAGCAGCGAGTCCTCAC
TCCGGTTGAACACGTTGTGGGCACTGGTCAGCACCAGCTGCGGGTGGATG
AGGGTGCCGCCGCAGACGAAGTTGCCTTCCATGTCCATCAGCGCCACCAT
CCAGGGGAACTCGGCGAAGACGGACTCGCCATTGTTGTAGCCATCCAGCT
GGA

BO13595.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-PA 1380 CG8738-RA 594..1377 802..19 3920 100 Minus
CG8586-PA 1335 CG8586-RA 1188..1224 166..130 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1629 CG8738-RA 785..1568 802..19 3920 100 Minus
CG8586-RC 2473 CG8586-RC 1228..1336 225..117 275 83.5 Minus
CG8586-RB 1625 CG8586-RB 1323..1431 225..117 275 83.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8697739..8698522 802..19 3920 100 Minus
2R 25286936 2R 8693933..8694041 117..225 275 83.5 Plus
Blast to na_te.dros performed on 2015-02-10 18:31:39 has no hits.

BO13595.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:43 Download gff for BO13595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-PA 594..1380 18..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:08 Download gff for BO13595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-PA 594..1380 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:17 Download gff for BO13595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 785..1574 11..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:22 Download gff for BO13595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 785..1574 11..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:22 Download gff for BO13595.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8697739..8698525 18..802 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:17 Download gff for BO13595.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4585244..4586030 18..802 99 -> Minus

BO13595.5prime Sequence

760 bp (704 high quality bases) assembled on 2006-05-08

> BO13595.5prime
GAAGTTATCAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGG
CATTGATTTCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGC
CACGAGGTCTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGG
CAAGGGGAAGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACT
TGGAGTGCTGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCC
GAGATCGAGTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGA
TAATCCCCTTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGG
ACGAGCCGGGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGG
CACCTCTGCTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAA
GCCGCGCATTAACGAGGAGAGCAACTTCGGCTGCCGAGTCGTGGAGGAGT
GCTGCCCGTTGGGCGATCAGATAGAGGAGGGTCGCAATCCTATCCAGCGT
AACGTAAAGGATTTTCTGCTGAAGGGATGCGGCTATAGCAACCCGAAGGG
GCTCTACTACCAGCTGGATGGCTACAACAATGGCGAGTCCGTCTTCGCCG
AGTTCCCCTGGATGGTGGCGCTGATGGACATGGAAGGCAACTTCGTCTGC
GGCGGCACCCTCATCCACCCGCAGCTGGTGCTGACCAGTGCCCACAACGT
GTTCAACCGG

BO13595.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-PA 1380 CG8738-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1629 CG8738-RA 186..935 11..760 3735 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8696613..8697122 11..520 2535 99.8 Plus
2R 25286936 2R 8697647..8697889 518..760 1215 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:04:53 has no hits.

BO13595.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:44 Download gff for BO13595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:10 Download gff for BO13595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:31 Download gff for BO13595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 183..935 7..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:47 Download gff for BO13595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 183..935 7..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:47 Download gff for BO13595.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8696610..8697122 7..520 99 -> Plus
2R 8697650..8697889 521..760 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:31 Download gff for BO13595.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4584115..4584627 7..520 99 -> Plus
arm_2R 4585155..4585394 521..760 100   Plus

BO13595.complete Sequence

1411 bp assembled on 2007-07-13

GenBank Submission: FJ632850

> BO13595.complete
GAAGTTATCAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGG
CATTGATTTCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGC
CACGAGGTCTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGG
CAAGGGGAAGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACT
TGGAGTGCTGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCC
GAGATCGAGTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGA
TAATCCCCTTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGG
ACGAGCCGGGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGG
CACCTCTGCTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAA
GCCGCGCATTAACGAGGAGAGCAACTTCGGCTGCCGAGTCGTGGAGGAGT
GCTGCCCGTTGGGCGATCAGATAGAGGAGGGTCGCAATCCTATCCAGCGT
AACGTAAAGGATTTTCTGCTGAAGGGATGCGGCTATAGCAACCCGAAGGG
GCTCTACTACCAGCTGGATGGCTACAACAATGGCGAGTCCGTCTTCGCCG
AGTTCCCCTGGATGGTGGCGCTGATGGACATGGAAGGCAACTTCGTCTGC
GGCGGCACCCTCATCCACCCGCAGCTGGTGCTGACCAGTGCCCACAACGT
GTTCAACCGGAGTGAGGACTCGCTGCTGGTTCGAGCTGGTGACTGGGACC
TTAACAGCCAGACAGAGCTGCATCCCTACCAGATGCGGGCCATCAGCGAG
CTGCATCGCCACGAGAACTTCAACAACCTGACCCTATACAATGACATTGC
TCTGGTGGTGCTGGAGCGACCTTTCCAGGTGGCCCCGCACATACAGCCCA
TCTGCCTGCCGCCACCGGAGACGCCCCAAATGGAGGCTGAGTTGCGGAGT
GCAAGCTGCTTGGCCACTGGGTGGGGGCTCAGGTACAGCACGTCCCGCAC
CATGGAAAACCTGCTAAAGCGCATCGAGCTGCCGGCGGTGGACCACGAGT
CCTGCCAACGGCTGTTGCGGCACACTGTCCTGGGGCGTCGCTACAATCTC
CATCCGAGCTTCACTTGTGCCGGCGGCGTAAAGGGTAAGGACACCTGCAT
GGGCGACGGCGGCTCCCCGTTGTTTTGCACTTTGCCTGGGCAGAAGGATC
GCTACCAGCTGGTGGGCCTCGTGTCCTGGGGCATCGAATGTGCCGAGAAG
GATGTGCCTGCGGCCTACACGAATGTGGCCTATTTGAGGAACTGGATCGA
TGAGCAGGTGACGAAGAGCGGGTTCCCATTAATAGAGGGCTTTGCAAGCT
TTCTAGACCAT

BO13595.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1380 CG8738-PA 1..1377 17..1393 6885 100 Plus
CG8586-RC 1335 CG8586-PC 1129..1237 1187..1295 275 83.5 Plus
CG8586-RB 1335 CG8586-PB 1129..1237 1187..1295 275 83.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1629 CG8738-RA 186..1568 11..1393 6900 99.9 Plus
CG8586-RC 2473 CG8586-RC 1228..1336 1187..1295 275 83.5 Plus
CG8586-RB 1625 CG8586-RB 1323..1431 1187..1295 275 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8697647..8698522 518..1393 4380 100 Plus
2R 25286936 2R 8696613..8697122 11..520 2535 99.8 Plus
2R 25286936 2R 8693933..8694041 1295..1187 275 83.5 Minus
Blast to na_te.dros performed on 2014-11-28 00:38:03 has no hits.

BO13595.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:45 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 1..1380 17..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:05 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 185..1576 7..1401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:19 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 192..1568 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:46 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 185..1576 7..1401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:54 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 192..1568 17..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:54 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8696619..8697122 17..520 100 -> Plus
2R 8697650..8698522 521..1395 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:19 Download gff for BO13595.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4584124..4584627 17..520 100 -> Plus
arm_2R 4585155..4586027 521..1395 99   Plus

BO13595.pep Sequence

Translation from 16 to 1411

> BO13595.pep
MNVEQVLLISLALISLAPAILSIRTCGSHEVCVSKKKCDESDDSGKGKLV
KRILDNSCGRDLECCDREQLENFEAYQAEIEYRNQRRKNIWASSDNPLEG
EPKPNLVGAKEDEPGYKSCGVKRECVPRHLCSTGVVNEDGRYIIKPRINE
ESNFGCRVVEECCPLGDQIEEGRNPIQRNVKDFLLKGCGYSNPKGLYYQL
DGYNNGESVFAEFPWMVALMDMEGNFVCGGTLIHPQLVLTSAHNVFNRSE
DSLLVRAGDWDLNSQTELHPYQMRAISELHRHENFNNLTLYNDIALVVLE
RPFQVAPHIQPICLPPPETPQMEAELRSASCLATGWGLRYSTSRTMENLL
KRIELPAVDHESCQRLLRHTVLGRRYNLHPSFTCAGGVKGKDTCMGDGGS
PLFCTLPGQKDRYQLVGLVSWGIECAEKDVPAAYTNVAYLRNWIDEQVTK
SGFPLIEGFASFLDH

BO13595.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-PA 459 CG8738-PA 1..459 1..459 2478 100 Plus
CG8586-PC 444 CG8586-PC 10..441 7..455 1046 45.4 Plus
CG8586-PB 444 CG8586-PB 10..441 7..455 1046 45.4 Plus
CG8586-PA 444 CG8586-PA 10..441 7..455 1046 45.4 Plus
CG5390-PB 406 CG5390-PB 29..394 89..448 741 39.8 Plus