Clone Sequence Records
BO13595.3prime Sequence
803 bp (717 high quality bases) assembled on 2006-05-08
> BO13595.3prime
ATGGTCTAGAAAGCTTGCAAAGCCCTCTATTAATGGGAACCCGCTCTTCG
TCACCTGCTCATCGATCCAGTTCCTCAAATAGGCCACATTCGTGTAGGCC
GCAGGCACATCCTTCTCGGCACATTCGATGCCCCAGGACACGAGGCCCAC
CAGCTGGTAGCGATCCTTCTGCCCAGGCAAAGTGCAAAACAACGGGGAGC
CGCCGTCGCCCATGCAGGTGTCCTTACCCTTTACGCCGCCGGCACAAGTG
AAGCTCGGATGGAGATTGTAGCGACGCCCCAGGACAGTGTGCCGCAACAG
CCGTTGGCAGGACTCGTGGTCCACCGCCGGCAGCTCGATGCGCTTTAGCA
GGTTTTCCATGGTGCGGGACGTGCTGTACCTGAGCCCCCACCCAGTGGCC
AAGCAGCTTGCACTCCGCAACTCAGCCTCCATTTGGGGCGTCTCCGGTGG
CGGCAGGCAGATGGGCTGTATGTGCGGGGCCACCTGGAAAGGTCGCTCCA
GCACCACCAGAGCAATGTCATTGTATAGGGTCAGGTTGTTGAAGTTCTCG
TGGCGATGCAGCTCGCTGATGGCCCGCATCTGGTAGGGATGCAGCTCTGT
CTGGCTGTTAAGGTCCCAGTCACCAGCTCGAACCAGCAGCGAGTCCTCAC
TCCGGTTGAACACGTTGTGGGCACTGGTCAGCACCAGCTGCGGGTGGATG
AGGGTGCCGCCGCAGACGAAGTTGCCTTCCATGTCCATCAGCGCCACCAT
CCAGGGGAACTCGGCGAAGACGGACTCGCCATTGTTGTAGCCATCCAGCT
GGA
BO13595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-PA | 1380 | CG8738-RA | 594..1377 | 802..19 | 3920 | 100 | Minus |
CG8586-PA | 1335 | CG8586-RA | 1188..1224 | 166..130 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-RA | 1629 | CG8738-RA | 785..1568 | 802..19 | 3920 | 100 | Minus |
CG8586-RC | 2473 | CG8586-RC | 1228..1336 | 225..117 | 275 | 83.5 | Minus |
CG8586-RB | 1625 | CG8586-RB | 1323..1431 | 225..117 | 275 | 83.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8697739..8698522 | 802..19 | 3920 | 100 | Minus |
2R | 25286936 | 2R | 8693933..8694041 | 117..225 | 275 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:31:39 has no hits.
BO13595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:43 Download gff for
BO13595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-PA | 594..1380 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:08 Download gff for
BO13595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-PA | 594..1380 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:17 Download gff for
BO13595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 785..1574 | 11..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:22 Download gff for
BO13595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 785..1574 | 11..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:22 Download gff for
BO13595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8697739..8698525 | 18..802 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:17 Download gff for
BO13595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4585244..4586030 | 18..802 | 99 | -> | Minus |
BO13595.5prime Sequence
760 bp (704 high quality bases) assembled on 2006-05-08
> BO13595.5prime
GAAGTTATCAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGG
CATTGATTTCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGC
CACGAGGTCTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGG
CAAGGGGAAGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACT
TGGAGTGCTGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCC
GAGATCGAGTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGA
TAATCCCCTTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGG
ACGAGCCGGGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGG
CACCTCTGCTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAA
GCCGCGCATTAACGAGGAGAGCAACTTCGGCTGCCGAGTCGTGGAGGAGT
GCTGCCCGTTGGGCGATCAGATAGAGGAGGGTCGCAATCCTATCCAGCGT
AACGTAAAGGATTTTCTGCTGAAGGGATGCGGCTATAGCAACCCGAAGGG
GCTCTACTACCAGCTGGATGGCTACAACAATGGCGAGTCCGTCTTCGCCG
AGTTCCCCTGGATGGTGGCGCTGATGGACATGGAAGGCAACTTCGTCTGC
GGCGGCACCCTCATCCACCCGCAGCTGGTGCTGACCAGTGCCCACAACGT
GTTCAACCGG
BO13595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-PA | 1380 | CG8738-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-RA | 1629 | CG8738-RA | 186..935 | 11..760 | 3735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8696613..8697122 | 11..520 | 2535 | 99.8 | Plus |
2R | 25286936 | 2R | 8697647..8697889 | 518..760 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:04:53 has no hits.
BO13595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:44 Download gff for
BO13595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:10 Download gff for
BO13595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:31 Download gff for
BO13595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 183..935 | 7..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:47 Download gff for
BO13595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 183..935 | 7..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:47 Download gff for
BO13595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8696610..8697122 | 7..520 | 99 | -> | Plus |
2R | 8697650..8697889 | 521..760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:31 Download gff for
BO13595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4584115..4584627 | 7..520 | 99 | -> | Plus |
arm_2R | 4585155..4585394 | 521..760 | 100 | | Plus |
BO13595.complete Sequence
1411 bp assembled on 2007-07-13
GenBank Submission: FJ632850
> BO13595.complete
GAAGTTATCAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGG
CATTGATTTCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGC
CACGAGGTCTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGG
CAAGGGGAAGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACT
TGGAGTGCTGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCC
GAGATCGAGTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGA
TAATCCCCTTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGG
ACGAGCCGGGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGG
CACCTCTGCTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAA
GCCGCGCATTAACGAGGAGAGCAACTTCGGCTGCCGAGTCGTGGAGGAGT
GCTGCCCGTTGGGCGATCAGATAGAGGAGGGTCGCAATCCTATCCAGCGT
AACGTAAAGGATTTTCTGCTGAAGGGATGCGGCTATAGCAACCCGAAGGG
GCTCTACTACCAGCTGGATGGCTACAACAATGGCGAGTCCGTCTTCGCCG
AGTTCCCCTGGATGGTGGCGCTGATGGACATGGAAGGCAACTTCGTCTGC
GGCGGCACCCTCATCCACCCGCAGCTGGTGCTGACCAGTGCCCACAACGT
GTTCAACCGGAGTGAGGACTCGCTGCTGGTTCGAGCTGGTGACTGGGACC
TTAACAGCCAGACAGAGCTGCATCCCTACCAGATGCGGGCCATCAGCGAG
CTGCATCGCCACGAGAACTTCAACAACCTGACCCTATACAATGACATTGC
TCTGGTGGTGCTGGAGCGACCTTTCCAGGTGGCCCCGCACATACAGCCCA
TCTGCCTGCCGCCACCGGAGACGCCCCAAATGGAGGCTGAGTTGCGGAGT
GCAAGCTGCTTGGCCACTGGGTGGGGGCTCAGGTACAGCACGTCCCGCAC
CATGGAAAACCTGCTAAAGCGCATCGAGCTGCCGGCGGTGGACCACGAGT
CCTGCCAACGGCTGTTGCGGCACACTGTCCTGGGGCGTCGCTACAATCTC
CATCCGAGCTTCACTTGTGCCGGCGGCGTAAAGGGTAAGGACACCTGCAT
GGGCGACGGCGGCTCCCCGTTGTTTTGCACTTTGCCTGGGCAGAAGGATC
GCTACCAGCTGGTGGGCCTCGTGTCCTGGGGCATCGAATGTGCCGAGAAG
GATGTGCCTGCGGCCTACACGAATGTGGCCTATTTGAGGAACTGGATCGA
TGAGCAGGTGACGAAGAGCGGGTTCCCATTAATAGAGGGCTTTGCAAGCT
TTCTAGACCAT
BO13595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-RA | 1380 | CG8738-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
CG8586-RC | 1335 | CG8586-PC | 1129..1237 | 1187..1295 | 275 | 83.5 | Plus |
CG8586-RB | 1335 | CG8586-PB | 1129..1237 | 1187..1295 | 275 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-RA | 1629 | CG8738-RA | 186..1568 | 11..1393 | 6900 | 99.9 | Plus |
CG8586-RC | 2473 | CG8586-RC | 1228..1336 | 1187..1295 | 275 | 83.5 | Plus |
CG8586-RB | 1625 | CG8586-RB | 1323..1431 | 1187..1295 | 275 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8697647..8698522 | 518..1393 | 4380 | 100 | Plus |
2R | 25286936 | 2R | 8696613..8697122 | 11..520 | 2535 | 99.8 | Plus |
2R | 25286936 | 2R | 8693933..8694041 | 1295..1187 | 275 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:38:03 has no hits.
BO13595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:45 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 1..1380 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:05 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 185..1576 | 7..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:19 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 192..1568 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:46 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 185..1576 | 7..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:54 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8738-RA | 192..1568 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:54 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8696619..8697122 | 17..520 | 100 | -> | Plus |
2R | 8697650..8698522 | 521..1395 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:19 Download gff for
BO13595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4584124..4584627 | 17..520 | 100 | -> | Plus |
arm_2R | 4585155..4586027 | 521..1395 | 99 | | Plus |
BO13595.pep Sequence
Translation from 16 to 1411
> BO13595.pep
MNVEQVLLISLALISLAPAILSIRTCGSHEVCVSKKKCDESDDSGKGKLV
KRILDNSCGRDLECCDREQLENFEAYQAEIEYRNQRRKNIWASSDNPLEG
EPKPNLVGAKEDEPGYKSCGVKRECVPRHLCSTGVVNEDGRYIIKPRINE
ESNFGCRVVEECCPLGDQIEEGRNPIQRNVKDFLLKGCGYSNPKGLYYQL
DGYNNGESVFAEFPWMVALMDMEGNFVCGGTLIHPQLVLTSAHNVFNRSE
DSLLVRAGDWDLNSQTELHPYQMRAISELHRHENFNNLTLYNDIALVVLE
RPFQVAPHIQPICLPPPETPQMEAELRSASCLATGWGLRYSTSRTMENLL
KRIELPAVDHESCQRLLRHTVLGRRYNLHPSFTCAGGVKGKDTCMGDGGS
PLFCTLPGQKDRYQLVGLVSWGIECAEKDVPAAYTNVAYLRNWIDEQVTK
SGFPLIEGFASFLDH
BO13595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8738-PA | 459 | CG8738-PA | 1..459 | 1..459 | 2478 | 100 | Plus |
CG8586-PC | 444 | CG8586-PC | 10..441 | 7..455 | 1046 | 45.4 | Plus |
CG8586-PB | 444 | CG8586-PB | 10..441 | 7..455 | 1046 | 45.4 | Plus |
CG8586-PA | 444 | CG8586-PA | 10..441 | 7..455 | 1046 | 45.4 | Plus |
CG5390-PB | 406 | CG5390-PB | 29..394 | 89..448 | 741 | 39.8 | Plus |