Clone Sequence Records
BO13602.3prime Sequence
410 bp (409 high quality bases) assembled on 2006-05-08
> BO13602.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGAGCAGGAAGTGGCCCTTGGGCTTCA
GTTTGCTGCGGATGAGGCGCTGTTTCTCGGACTCGGCATTTGCCTTAAGG
CGTTCATGTCGCTGCTTGGCGAACTCTAGCTCCCCACTTAGCTCCACGAT
CCTGGTGGCGATCTCCTGCTGCTTAATCAGGCGCCTCTTCTGGTTGGCAC
CTAGCGGCGTGGGCCTACCATCTAAGTACGTGTAGTCGGGCAGGTTGGTG
AGTGGGCCAAAGGCATTTGGGTTTTCCGGCAATCCCTTGGCTGCACGCCA
CTTCTGATCAATGGCACGGGGGGCAGTAAGAGCAATGCTTCGCTGAGCTG
TACTTGTGGCGGAGCTGGCCAAGCAGATCTTTGTTATTTTCAGCATGTCG
ACTGATAACT
BO13602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1577-PA | 381 | mRpL52-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 558 | CG1577-RA | 98..475 | 396..19 | 1890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7673804..7673983 | 19..198 | 900 | 100 | Plus |
2R | 25286936 | 2R | 7674043..7674195 | 198..350 | 765 | 100 | Plus |
2R | 25286936 | 2R | 7674255..7674303 | 348..396 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:35:44 has no hits.
BO13602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:48 Download gff for
BO13602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1577-PA | 1..381 | 18..396 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:15 Download gff for
BO13602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1577-PA | 1..381 | 18..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:45 Download gff for
BO13602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..479 | 13..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:58 Download gff for
BO13602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..479 | 13..396 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:58 Download gff for
BO13602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674044..7674192 | 199..347 | 100 | <- | Plus |
2R | 7674255..7674303 | 348..396 | 100 | | Plus |
2R | 7673800..7673983 | 13..198 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:45 Download gff for
BO13602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3561549..3561697 | 199..347 | 100 | <- | Plus |
arm_2R | 3561760..3561808 | 348..396 | 100 | | Plus |
arm_2R | 3561305..3561488 | 13..198 | 98 | <- | Plus |
BO13602.5prime Sequence
410 bp (409 high quality bases) assembled on 2006-05-08
> BO13602.5prime
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAAGCAAGC
TTTCTAGACC
BO13602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1577-PA | 381 | mRpL52-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 558 | CG1577-RA | 98..475 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7673804..7673983 | 394..215 | 900 | 100 | Minus |
2R | 25286936 | 2R | 7674043..7674195 | 215..63 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7674255..7674303 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:08 has no hits.
BO13602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:48 Download gff for
BO13602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1577-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:17 Download gff for
BO13602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1577-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:38 Download gff for
BO13602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..479 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:27 Download gff for
BO13602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..479 | 17..400 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:27 Download gff for
BO13602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674044..7674192 | 66..214 | 100 | <- | Minus |
2R | 7674255..7674303 | 17..65 | 100 | | Minus |
2R | 7673800..7673983 | 215..400 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:38 Download gff for
BO13602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3561305..3561488 | 215..400 | 98 | <- | Minus |
arm_2R | 3561549..3561697 | 66..214 | 100 | <- | Minus |
arm_2R | 3561760..3561808 | 17..65 | 100 | | Minus |
BO13602.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ632851
> BO13602.complete
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAAGCAAGC
TTTCTAGACCAT
BO13602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 381 | CG1577-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 558 | CG1577-RA | 98..475 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7673804..7673983 | 394..215 | 900 | 100 | Minus |
2R | 25286936 | 2R | 7674043..7674195 | 215..63 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7674255..7674303 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:38 has no hits.
BO13602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:16 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:28 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 101..482 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:26 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..475 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:16 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 101..482 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:01 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..475 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:01 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674044..7674192 | 66..214 | 100 | <- | Minus |
2R | 7674255..7674303 | 17..65 | 100 | | Minus |
2R | 7673800..7673983 | 215..396 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:26 Download gff for
BO13602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3561305..3561488 | 215..396 | 98 | <- | Minus |
arm_2R | 3561549..3561697 | 66..214 | 100 | <- | Minus |
arm_2R | 3561760..3561808 | 17..65 | 100 | | Minus |
BO13602.pep Sequence
Translation from 16 to 412
> BO13602.pep
MLKITKICLASSATSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLT
NLPDYTYLDGRPTPLGANQKRRLIKQQEIATRIVELSGELEFAKQRHERL
KANAESEKQRLIRSKLKPKGHFLLKKASFLDH
BO13602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-PA | 126 | CG1577-PA | 1..126 | 1..126 | 637 | 100 | Plus |