Clone BO13602 Report

Search the DGRC for BO13602

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL52-RA
Protein status:BO13602.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO13602.3prime Sequence

410 bp (409 high quality bases) assembled on 2006-05-08

> BO13602.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGAGCAGGAAGTGGCCCTTGGGCTTCA
GTTTGCTGCGGATGAGGCGCTGTTTCTCGGACTCGGCATTTGCCTTAAGG
CGTTCATGTCGCTGCTTGGCGAACTCTAGCTCCCCACTTAGCTCCACGAT
CCTGGTGGCGATCTCCTGCTGCTTAATCAGGCGCCTCTTCTGGTTGGCAC
CTAGCGGCGTGGGCCTACCATCTAAGTACGTGTAGTCGGGCAGGTTGGTG
AGTGGGCCAAAGGCATTTGGGTTTTCCGGCAATCCCTTGGCTGCACGCCA
CTTCTGATCAATGGCACGGGGGGCAGTAAGAGCAATGCTTCGCTGAGCTG
TACTTGTGGCGGAGCTGGCCAAGCAGATCTTTGTTATTTTCAGCATGTCG
ACTGATAACT

BO13602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1577-PA 381 mRpL52-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..475 396..19 1890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673804..7673983 19..198 900 100 Plus
2R 25286936 2R 7674043..7674195 198..350 765 100 Plus
2R 25286936 2R 7674255..7674303 348..396 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:35:44 has no hits.

BO13602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:48 Download gff for BO13602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1577-PA 1..381 18..396 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:15 Download gff for BO13602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1577-PA 1..381 18..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:45 Download gff for BO13602.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..479 13..396 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:58 Download gff for BO13602.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..479 13..396 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:58 Download gff for BO13602.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7674044..7674192 199..347 100 <- Plus
2R 7674255..7674303 348..396 100   Plus
2R 7673800..7673983 13..198 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:45 Download gff for BO13602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561549..3561697 199..347 100 <- Plus
arm_2R 3561760..3561808 348..396 100   Plus
arm_2R 3561305..3561488 13..198 98 <- Plus

BO13602.5prime Sequence

410 bp (409 high quality bases) assembled on 2006-05-08

> BO13602.5prime
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAAGCAAGC
TTTCTAGACC

BO13602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1577-PA 381 mRpL52-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..475 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673804..7673983 394..215 900 100 Minus
2R 25286936 2R 7674043..7674195 215..63 765 100 Minus
2R 25286936 2R 7674255..7674303 65..17 245 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:31:08 has no hits.

BO13602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:48 Download gff for BO13602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1577-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:17 Download gff for BO13602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1577-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:38 Download gff for BO13602.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..479 17..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:27 Download gff for BO13602.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..479 17..400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:27 Download gff for BO13602.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7674044..7674192 66..214 100 <- Minus
2R 7674255..7674303 17..65 100   Minus
2R 7673800..7673983 215..400 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:38 Download gff for BO13602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561305..3561488 215..400 98 <- Minus
arm_2R 3561549..3561697 66..214 100 <- Minus
arm_2R 3561760..3561808 17..65 100   Minus

BO13602.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ632851

> BO13602.complete
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAAGCAAGC
TTTCTAGACCAT

BO13602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 381 CG1577-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..475 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673804..7673983 394..215 900 100 Minus
2R 25286936 2R 7674043..7674195 215..63 765 100 Minus
2R 25286936 2R 7674255..7674303 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:38 has no hits.

BO13602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:16 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:28 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 101..482 17..400 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:26 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..475 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:16 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 101..482 17..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:01 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..475 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:01 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7674044..7674192 66..214 100 <- Minus
2R 7674255..7674303 17..65 100   Minus
2R 7673800..7673983 215..396 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:26 Download gff for BO13602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561305..3561488 215..396 98 <- Minus
arm_2R 3561549..3561697 66..214 100 <- Minus
arm_2R 3561760..3561808 17..65 100   Minus

BO13602.pep Sequence

Translation from 16 to 412

> BO13602.pep
MLKITKICLASSATSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLT
NLPDYTYLDGRPTPLGANQKRRLIKQQEIATRIVELSGELEFAKQRHERL
KANAESEKQRLIRSKLKPKGHFLLKKASFLDH

BO13602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-PA 126 CG1577-PA 1..126 1..126 637 100 Plus