Clone BO13604 Report

Search the DGRC for BO13604

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCpr64Aa-RA
Protein status:BO13604.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO13604.3prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO13604.3prime
ATGGTCTAGAAAGCTTGCGTGGTAGCCCAGGGGCGAGAGGGCGGGCAGGG
CCAGCTTGGGCAGAGCAGGTCCATAGGCGGGAGCCAGAGCCGGTCCGTAT
CCGTGGGCCAGAGCCGGGTAAGCGGGCGCCAGAGCCGGACCATAGGCGGG
CACCTTGGCCACCAGAGGAGAGGCATGGAGCAGCGGAGCCGGGGCCAGAA
CCTTGGCCACCGGAGCCACAGCCTTCACCACAGCTCCCTCGCGGCGCACC
ACTGCGTTGAATCCGTGCACGGGATCGGCGGTGTACTCCACAATGCGGCG
GGTTCCGTCGGCCTCAATCAGTGAATAGGCGCCCTGCACCACATCTCCGC
TGCGGGTCTCCTGCTGGCTCTTCACGTCACCAGTGGAGCCATCATGAACA
TCGTAGCTGAAGGTGTATTGGGGATTGGGATCGTATGGCTCCGGACCCGC
CACCTTGGCCACCAGAGGAGCAGCCACCTTGGCCAGCGCCGGGTACGATG
GATAGGCGGGCAGTGCCAGTCCGGGACCAGGGACCACAACGGCGGAGGAC
ACCGCCACCAGGGCGCTCAGGACGAGGATCAGTTTCTGTGCCATGTCGAC
TGATAACT

BO13604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15006-PA 579 CG15006-RA 1..576 594..19 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 1014 CG15006-RA 87..662 594..19 2880 100 Minus
Ccp84Ag-RA 1097 CG2342-RA 152..349 435..238 315 77.9 Minus
Cpr92A-RA 1120 CG6240-RA 282..496 458..244 205 73.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4208190..4208564 19..393 1875 100 Plus
3L 28110227 3L 4208891..4209092 393..594 1010 100 Plus
3R 32079331 3R 6687094..6687291 435..238 315 77.3 Minus
3R 32079331 3R 19598126..19598340 244..458 205 73 Plus
Blast to na_te.dros performed on 2015-02-12 17:01:46 has no hits.

BO13604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:51 Download gff for BO13604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15006-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:21 Download gff for BO13604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15006-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:21 Download gff for BO13604.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..666 14..604 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:44 Download gff for BO13604.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..666 14..604 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:44 Download gff for BO13604.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4208186..4208564 14..393 99 <- Plus
3L 4208892..4209103 394..604 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:21 Download gff for BO13604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4208892..4209103 394..604 98   Plus
arm_3L 4208186..4208564 14..393 99 <- Plus

BO13604.5prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO13604.5prime
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACGCAAGCTT
TCTAGACC

BO13604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15006-PA 579 CG15006-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 1014 CG15006-RA 87..662 17..592 2880 100 Plus
Ccp84Ag-RA 1097 CG2342-RA 152..349 176..373 315 77.9 Plus
Cpr92A-RA 1120 CG6240-RA 282..496 153..367 205 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4208190..4208564 592..218 1875 100 Minus
3L 28110227 3L 4208891..4209092 218..17 1010 100 Minus
3R 32079331 3R 6687094..6687291 176..373 315 77.3 Plus
3R 32079331 3R 19598126..19598340 367..153 205 73 Minus
Blast to na_te.dros performed on 2015-02-12 11:02:40 has no hits.

BO13604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:52 Download gff for BO13604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15006-PA 1..579 17..596 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:22 Download gff for BO13604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15006-PA 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:56 Download gff for BO13604.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..666 7..597 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:18 Download gff for BO13604.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..666 7..597 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:18 Download gff for BO13604.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4208186..4208564 218..597 99 <- Minus
3L 4208892..4209103 7..217 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:56 Download gff for BO13604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4208186..4208564 218..597 99 <- Minus
arm_3L 4208892..4209103 7..217 98   Minus

BO13604.complete Sequence

610 bp assembled on 2006-10-11

GenBank Submission: FJ632852

> BO13604.complete
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACGCAAGCTT
TCTAGACCAT

BO13604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 579 CG15006-PA 1..576 17..592 2880 100 Plus
Ccp84Ag-RA 576 CG2342-PA 106..303 176..373 315 77.3 Plus
Cpr92A-RA 738 CG6240-PA 161..375 153..367 205 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 1014 CG15006-RA 87..662 17..592 2880 100 Plus
Ccp84Ag-RA 1097 CG2342-RA 152..349 176..373 315 77.3 Plus
Cpr92A-RA 1120 CG6240-RA 282..496 153..367 205 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4208190..4208564 592..218 1875 100 Minus
3L 28110227 3L 4208891..4209092 218..17 1010 100 Minus
3R 32079331 3R 6687094..6687291 176..373 315 77.3 Plus
3R 32079331 3R 19598126..19598340 367..153 205 73 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:33 has no hits.

BO13604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:17 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:29 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 84..674 7..597 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:14 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 87..662 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:19 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 84..674 7..597 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:44 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 87..662 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:44 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4208188..4208564 218..594 99 <- Minus
3L 4208892..4209092 17..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:14 Download gff for BO13604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4208188..4208564 218..594 99 <- Minus
arm_3L 4208892..4209092 17..217 100   Minus

BO13604.pep Sequence

Translation from 16 to 610

> BO13604.pep
MAQKLILVLSALVAVSSAVVVPGPGLALPAYPSYPALAKVAAPLVAKVAG
PEPYDPNPQYTFSYDVHDGSTGDVKSQQETRSGDVVQGAYSLIEADGTRR
IVEYTADPVHGFNAVVRREGAVVKAVAPVAKVLAPAPLLHASPLVAKVPA
YGPALAPAYPALAHGYGPALAPAYGPALPKLALPALSPLGYHASFLDH

BO13604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-PA 192 CG15006-PA 1..192 1..192 980 100 Plus
Cpr92A-PA 245 CG6240-PA 4..216 6..195 402 45.2 Plus
Ccp84Ag-PA 191 CG2342-PA 1..188 1..187 354 47.1 Plus
Ccp84Ad-PA 199 CG2341-PA 1..177 1..176 341 49.2 Plus
Ccp84Aa-PA 205 CG2360-PA 1..177 1..176 332 48.1 Plus