Clone Sequence Records
BO13604.3prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13604.3prime
ATGGTCTAGAAAGCTTGCGTGGTAGCCCAGGGGCGAGAGGGCGGGCAGGG
CCAGCTTGGGCAGAGCAGGTCCATAGGCGGGAGCCAGAGCCGGTCCGTAT
CCGTGGGCCAGAGCCGGGTAAGCGGGCGCCAGAGCCGGACCATAGGCGGG
CACCTTGGCCACCAGAGGAGAGGCATGGAGCAGCGGAGCCGGGGCCAGAA
CCTTGGCCACCGGAGCCACAGCCTTCACCACAGCTCCCTCGCGGCGCACC
ACTGCGTTGAATCCGTGCACGGGATCGGCGGTGTACTCCACAATGCGGCG
GGTTCCGTCGGCCTCAATCAGTGAATAGGCGCCCTGCACCACATCTCCGC
TGCGGGTCTCCTGCTGGCTCTTCACGTCACCAGTGGAGCCATCATGAACA
TCGTAGCTGAAGGTGTATTGGGGATTGGGATCGTATGGCTCCGGACCCGC
CACCTTGGCCACCAGAGGAGCAGCCACCTTGGCCAGCGCCGGGTACGATG
GATAGGCGGGCAGTGCCAGTCCGGGACCAGGGACCACAACGGCGGAGGAC
ACCGCCACCAGGGCGCTCAGGACGAGGATCAGTTTCTGTGCCATGTCGAC
TGATAACT
BO13604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15006-PA | 579 | CG15006-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 1014 | CG15006-RA | 87..662 | 594..19 | 2880 | 100 | Minus |
Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 435..238 | 315 | 77.9 | Minus |
Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 458..244 | 205 | 73.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4208190..4208564 | 19..393 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 4208891..4209092 | 393..594 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 6687094..6687291 | 435..238 | 315 | 77.3 | Minus |
3R | 32079331 | 3R | 19598126..19598340 | 244..458 | 205 | 73 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:01:46 has no hits.
BO13604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:51 Download gff for
BO13604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15006-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:21 Download gff for
BO13604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15006-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:21 Download gff for
BO13604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..666 | 14..604 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:44 Download gff for
BO13604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..666 | 14..604 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:44 Download gff for
BO13604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4208186..4208564 | 14..393 | 99 | <- | Plus |
3L | 4208892..4209103 | 394..604 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:21 Download gff for
BO13604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4208892..4209103 | 394..604 | 98 | | Plus |
arm_3L | 4208186..4208564 | 14..393 | 99 | <- | Plus |
BO13604.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13604.5prime
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACGCAAGCTT
TCTAGACC
BO13604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15006-PA | 579 | CG15006-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 1014 | CG15006-RA | 87..662 | 17..592 | 2880 | 100 | Plus |
Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 176..373 | 315 | 77.9 | Plus |
Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 153..367 | 205 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4208190..4208564 | 592..218 | 1875 | 100 | Minus |
3L | 28110227 | 3L | 4208891..4209092 | 218..17 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 6687094..6687291 | 176..373 | 315 | 77.3 | Plus |
3R | 32079331 | 3R | 19598126..19598340 | 367..153 | 205 | 73 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:02:40 has no hits.
BO13604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:52 Download gff for
BO13604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15006-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:22 Download gff for
BO13604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15006-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:56 Download gff for
BO13604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..666 | 7..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:18 Download gff for
BO13604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..666 | 7..597 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:18 Download gff for
BO13604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4208186..4208564 | 218..597 | 99 | <- | Minus |
3L | 4208892..4209103 | 7..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:56 Download gff for
BO13604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4208186..4208564 | 218..597 | 99 | <- | Minus |
arm_3L | 4208892..4209103 | 7..217 | 98 | | Minus |
BO13604.complete Sequence
610 bp assembled on 2006-10-11
GenBank Submission: FJ632852
> BO13604.complete
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACGCAAGCTT
TCTAGACCAT
BO13604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 579 | CG15006-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Ccp84Ag-RA | 576 | CG2342-PA | 106..303 | 176..373 | 315 | 77.3 | Plus |
Cpr92A-RA | 738 | CG6240-PA | 161..375 | 153..367 | 205 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 1014 | CG15006-RA | 87..662 | 17..592 | 2880 | 100 | Plus |
Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 176..373 | 315 | 77.3 | Plus |
Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 153..367 | 205 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4208190..4208564 | 592..218 | 1875 | 100 | Minus |
3L | 28110227 | 3L | 4208891..4209092 | 218..17 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 6687094..6687291 | 176..373 | 315 | 77.3 | Plus |
3R | 32079331 | 3R | 19598126..19598340 | 367..153 | 205 | 73 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:33 has no hits.
BO13604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:17 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:29 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 84..674 | 7..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:14 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 87..662 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:19 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 84..674 | 7..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:44 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 87..662 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:44 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4208188..4208564 | 218..594 | 99 | <- | Minus |
3L | 4208892..4209092 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:14 Download gff for
BO13604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4208188..4208564 | 218..594 | 99 | <- | Minus |
arm_3L | 4208892..4209092 | 17..217 | 100 | | Minus |
BO13604.pep Sequence
Translation from 16 to 610
> BO13604.pep
MAQKLILVLSALVAVSSAVVVPGPGLALPAYPSYPALAKVAAPLVAKVAG
PEPYDPNPQYTFSYDVHDGSTGDVKSQQETRSGDVVQGAYSLIEADGTRR
IVEYTADPVHGFNAVVRREGAVVKAVAPVAKVLAPAPLLHASPLVAKVPA
YGPALAPAYPALAHGYGPALAPAYGPALPKLALPALSPLGYHASFLDH
BO13604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-PA | 192 | CG15006-PA | 1..192 | 1..192 | 980 | 100 | Plus |
Cpr92A-PA | 245 | CG6240-PA | 4..216 | 6..195 | 402 | 45.2 | Plus |
Ccp84Ag-PA | 191 | CG2342-PA | 1..188 | 1..187 | 354 | 47.1 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 1..177 | 1..176 | 341 | 49.2 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 1..177 | 1..176 | 332 | 48.1 | Plus |